[INFO] cloning repository https://github.com/David-OConnor/plasmid_check [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/David-OConnor/plasmid_check" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDavid-OConnor%2Fplasmid_check", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDavid-OConnor%2Fplasmid_check'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] c0c4d883f936a45822aa8c74900ae4aea1a5494f [INFO] checking David-OConnor/plasmid_check against master#4847d6a9d07d4be9ba3196f6ad444af2d7bdde72 for pr-134272 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDavid-OConnor%2Fplasmid_check" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/David-OConnor/plasmid_check on toolchain 4847d6a9d07d4be9ba3196f6ad444af2d7bdde72 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4847d6a9d07d4be9ba3196f6ad444af2d7bdde72" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/David-OConnor/plasmid_check [INFO] finished tweaking git repo https://github.com/David-OConnor/plasmid_check [INFO] tweaked toml for git repo https://github.com/David-OConnor/plasmid_check written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/David-OConnor/plasmid_check already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4847d6a9d07d4be9ba3196f6ad444af2d7bdde72" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded circular v0.3.0 [INFO] [stderr] Downloaded na_seq v0.2.4 [INFO] [stderr] Downloaded wayland-cursor v0.31.4 [INFO] [stderr] Downloaded ordered-float v4.2.2 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded wayland-protocols-wlr v0.3.2 [INFO] [stderr] Downloaded accesskit_consumer v0.24.1 [INFO] [stderr] Downloaded accesskit_windows v0.23.0 [INFO] [stderr] Downloaded wayland-backend v0.3.5 [INFO] [stderr] Downloaded wide v0.7.26 [INFO] [stderr] Downloaded serde v1.0.207 [INFO] [stderr] Downloaded ureq v2.10.1 [INFO] [stderr] Downloaded statrs v0.17.1 [INFO] [stderr] Downloaded glow v0.14.1 [INFO] [stderr] Downloaded quick-xml v0.37.1 [INFO] [stderr] Downloaded sysinfo v0.31.4 [INFO] [stderr] Downloaded bio v2.0.1 [INFO] [stderr] Downloaded egui-file-dialog v0.7.0 [INFO] [stderr] Downloaded rustls-webpki v0.102.7 [INFO] [stderr] Downloaded wayland-protocols v0.32.2 [INFO] [stderr] Downloaded webpki-roots v0.26.5 [INFO] [stderr] Downloaded wayland-client v0.31.4 [INFO] [stderr] Downloaded wayland-protocols-plasma v0.3.2 [INFO] [stderr] Downloaded windows-core v0.57.0 [INFO] [stderr] Downloaded accesskit v0.16.1 [INFO] [stderr] Downloaded egui_extras v0.29.1 [INFO] [stderr] Downloaded serde_derive v1.0.207 [INFO] [stderr] Downloaded accesskit_winit v0.22.1 [INFO] [stderr] Downloaded wayland-scanner v0.31.3 [INFO] [stderr] Downloaded nalgebra v0.32.6 [INFO] [stderr] Downloaded wayland-sys v0.31.3 [INFO] [stderr] Downloaded libloading v0.8.4 [INFO] [stderr] Downloaded windows-interface v0.57.0 [INFO] [stderr] Downloaded gb-io v0.7.1 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded multimap v0.10.0 [INFO] [stderr] Downloaded x11-clipboard v0.9.2 [INFO] [stderr] Downloaded accesskit_macos v0.17.1 [INFO] [stderr] Downloaded accesskit_atspi_common v0.9.1 [INFO] [stderr] Downloaded err-derive v0.3.1 [INFO] [stderr] Downloaded accesskit_unix v0.12.1 [INFO] [stderr] Downloaded windows-implement v0.57.0 [INFO] [stderr] Downloaded windows v0.57.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+4847d6a9d07d4be9ba3196f6ad444af2d7bdde72" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1ce2d198dec5681dc4fdb47f86d7a1a95ad4b8c21925cc3549bb63f3baa311c9 [INFO] running `Command { std: "docker" "start" "-a" "1ce2d198dec5681dc4fdb47f86d7a1a95ad4b8c21925cc3549bb63f3baa311c9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1ce2d198dec5681dc4fdb47f86d7a1a95ad4b8c21925cc3549bb63f3baa311c9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1ce2d198dec5681dc4fdb47f86d7a1a95ad4b8c21925cc3549bb63f3baa311c9", kill_on_drop: false }` [INFO] [stdout] 1ce2d198dec5681dc4fdb47f86d7a1a95ad4b8c21925cc3549bb63f3baa311c9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+4847d6a9d07d4be9ba3196f6ad444af2d7bdde72" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a8ecc3579e607545d8220cebe9a69e4deb45e4a20844052bfbbe9e8140ed4236 [INFO] running `Command { std: "docker" "start" "-a" "a8ecc3579e607545d8220cebe9a69e4deb45e4a20844052bfbbe9e8140ed4236", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling serde v1.0.207 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Checking libloading v0.8.4 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling wayland-sys v0.31.3 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling wayland-backend v0.3.5 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling syn v2.0.70 [INFO] [stderr] Checking parking v2.2.0 [INFO] [stderr] Compiling thiserror v1.0.64 [INFO] [stderr] Compiling generic-array v0.14.7 [INFO] [stderr] Checking dlib v0.5.2 [INFO] [stderr] Checking futures-io v0.3.30 [INFO] [stderr] Compiling wayland-client v0.31.4 [INFO] [stderr] Compiling wayland-scanner v0.31.3 [INFO] [stderr] Checking event-listener v2.5.3 [INFO] [stderr] Compiling io-lifetimes v1.0.11 [INFO] [stderr] Checking futures-lite v2.3.0 [INFO] [stderr] Compiling polling v2.8.0 [INFO] [stderr] Compiling memoffset v0.7.1 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Checking ttf-parser v0.24.0 [INFO] [stderr] Checking fastrand v1.9.0 [INFO] [stderr] Checking async-task v4.7.1 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Checking waker-fn v1.2.0 [INFO] [stderr] Compiling rustix v0.37.27 [INFO] [stderr] Checking atomic-waker v1.1.2 [INFO] [stderr] Checking piper v0.2.3 [INFO] [stderr] Checking async-lock v2.8.0 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling async-io v1.13.0 [INFO] [stderr] Compiling async-fs v1.6.0 [INFO] [stderr] Checking futures-lite v1.13.0 [INFO] [stderr] Checking linux-raw-sys v0.3.8 [INFO] [stderr] Checking concurrent-queue v2.5.0 [INFO] [stderr] Compiling khronos_api v3.1.0 [INFO] [stderr] Checking cpufeatures v0.2.12 [INFO] [stderr] Checking event-listener v5.3.1 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking parking_lot_core v0.9.10 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking event-listener-strategy v0.5.2 [INFO] [stderr] Checking socket2 v0.4.10 [INFO] [stderr] Checking async-channel v2.3.1 [INFO] [stderr] Checking parking_lot v0.12.3 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking blocking v1.6.1 [INFO] [stderr] Checking nix v0.26.4 [INFO] [stderr] Checking xdg-home v1.2.0 [INFO] [stderr] Checking async-executor v1.12.0 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking async-broadcast v0.5.1 [INFO] [stderr] Checking ordered-stream v0.2.0 [INFO] [stderr] Compiling xml-rs v0.8.20 [INFO] [stderr] Checking accesskit v0.16.1 [INFO] [stderr] Checking hex v0.4.3 [INFO] [stderr] Checking crypto-common v0.1.6 [INFO] [stderr] Checking block-buffer v0.10.4 [INFO] [stderr] Checking xcursor v0.3.5 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Checking memmap2 v0.9.4 [INFO] [stderr] Compiling x11-dl v2.21.0 [INFO] [stderr] Checking sha1 v0.10.6 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Checking arrayref v0.3.7 [INFO] [stderr] Compiling unicase v2.7.0 [INFO] [stderr] Checking epaint_default_fonts v0.29.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.17 [INFO] [stderr] Checking nohash-hasher v0.2.0 [INFO] [stderr] Checking unicode-normalization v0.1.23 [INFO] [stderr] Checking immutable-chunkmap v2.0.5 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Compiling gl_generator v0.14.0 [INFO] [stderr] Compiling ring v0.17.8 [INFO] [stderr] Compiling phf_shared v0.10.0 [INFO] [stderr] Checking idna v0.5.0 [INFO] [stderr] Checking accesskit_consumer v0.24.1 [INFO] [stderr] Checking form_urlencoded v1.2.1 [INFO] [stderr] Checking xkbcommon-dl v0.4.2 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking owned_ttf_parser v0.24.0 [INFO] [stderr] Compiling glutin_egl_sys v0.7.0 [INFO] [stderr] Compiling glutin_glx_sys v0.6.0 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking ab_glyph v0.2.28 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking url v2.5.2 [INFO] [stderr] Compiling toml_datetime v0.6.6 [INFO] [stderr] Compiling serde_spanned v0.6.7 [INFO] [stderr] Compiling phf_generator v0.10.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling glutin v0.32.1 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling toml_edit v0.19.15 [INFO] [stderr] Compiling toml_edit v0.21.1 [INFO] [stderr] Checking rustls-pki-types v1.8.0 [INFO] [stderr] Checking spin v0.9.8 [INFO] [stderr] Checking untrusted v0.9.0 [INFO] [stderr] Compiling zvariant_utils v1.0.1 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking flate2 v1.0.30 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling string_cache_codegen v0.5.2 [INFO] [stderr] Compiling mime_guess2 v2.0.5 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling err-derive v0.3.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling glutin-winit v0.5.0 [INFO] [stderr] Checking home v0.5.9 [INFO] [stderr] Compiling anyhow v1.0.86 [INFO] [stderr] Compiling unicode-xid v0.2.4 [INFO] [stderr] Checking option-ext v0.2.0 [INFO] [stderr] Compiling virtue v0.0.13 [INFO] [stderr] Compiling rustls v0.23.12 [INFO] [stderr] Compiling gb-io v0.7.1 [INFO] [stderr] Checking dirs-sys v0.4.1 [INFO] [stderr] Compiling synstructure v0.12.6 [INFO] [stderr] Checking webbrowser v1.0.1 [INFO] [stderr] Checking png v0.17.13 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking x11rb v0.13.1 [INFO] [stderr] Compiling regex v1.10.5 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Compiling bincode_derive v2.0.0-rc.3 [INFO] [stderr] Checking web-time v1.1.0 [INFO] [stderr] Checking glow v0.14.1 [INFO] [stderr] Checking mime v0.3.17 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking zeroize v1.8.1 [INFO] [stderr] Compiling serde_json v1.0.127 [INFO] [stderr] Checking subtle v2.6.1 [INFO] [stderr] Checking precomputed-hash v0.1.1 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking wayland-csd-frame v0.3.0 [INFO] [stderr] Checking bincode v2.0.0-rc.3 [INFO] [stderr] Compiling proc-macro-crate v1.3.1 [INFO] [stderr] Compiling derivative v2.2.0 [INFO] [stderr] Compiling serde_derive v1.0.207 [INFO] [stderr] Compiling bytemuck_derive v1.7.0 [INFO] [stderr] Compiling tracing-attributes v0.1.27 [INFO] [stderr] Compiling thiserror-impl v1.0.64 [INFO] [stderr] Compiling enumflags2_derive v0.7.10 [INFO] [stderr] Compiling futures-macro v0.3.30 [INFO] [stderr] Compiling serde_repr v0.1.19 [INFO] [stderr] Compiling async-trait v0.1.81 [INFO] [stderr] Compiling async-recursion v1.1.1 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling proc-macro-crate v3.1.0 [INFO] [stderr] Compiling toml v0.7.8 [INFO] [stderr] Checking arboard v3.4.0 [INFO] [stderr] Checking rustls-webpki v0.102.7 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Checking futures-util v0.3.30 [INFO] [stderr] Compiling num_enum_derive v0.7.3 [INFO] [stderr] Checking tracing v0.1.40 [INFO] [stderr] Checking wayland-protocols v0.32.2 [INFO] [stderr] Checking wayland-cursor v0.31.4 [INFO] [stderr] Compiling zvariant_derive v3.15.2 [INFO] [stderr] Checking bytemuck v1.16.1 [INFO] [stderr] Compiling zbus_macros v3.15.2 [INFO] [stderr] Checking x11-clipboard v0.9.2 [INFO] [stderr] Checking directories v5.0.1 [INFO] [stderr] Checking emath v0.29.1 [INFO] [stderr] Checking polling v3.7.2 [INFO] [stderr] Checking tiny-skia-path v0.11.4 [INFO] [stderr] Checking safe_arch v0.7.2 [INFO] [stderr] Checking calloop v0.13.0 [INFO] [stderr] Checking ecolor v0.29.1 [INFO] [stderr] Compiling winresource v0.1.17 [INFO] [stderr] Checking image v0.25.1 [INFO] [stderr] Checking wide v0.7.26 [INFO] [stderr] Checking epaint v0.29.1 [INFO] [stderr] Checking webpki-roots v0.26.5 [INFO] [stderr] Checking calloop-wayland-source v0.3.0 [INFO] [stderr] Compiling plascad v0.7.8 (/opt/rustwide/workdir) [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking num_enum v0.7.3 [INFO] [stderr] Checking sysinfo v0.31.4 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking tiny-skia v0.11.4 [INFO] [stderr] Checking ordered-float v4.2.2 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking iana-time-zone v0.1.60 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking circular v0.3.0 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking base64 v0.22.1 [INFO] [stderr] Checking chrono v0.4.38 [INFO] [stderr] Checking na_seq v0.2.4 [INFO] [stderr] Checking egui v0.29.1 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking simba v0.8.1 [INFO] [stderr] Checking egui_glow v0.29.1 [INFO] [stderr] Checking ureq v2.10.1 [INFO] [stderr] Checking enumflags2 v0.7.10 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking serde_bytes v0.11.15 [INFO] [stderr] Checking multimap v0.10.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking string_cache v0.8.7 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking egui-file-dialog v0.7.0 [INFO] [stderr] Checking quick-xml v0.37.1 [INFO] [stderr] Checking wayland-protocols-wlr v0.3.2 [INFO] [stderr] Checking wayland-protocols-plasma v0.3.2 [INFO] [stderr] Checking zvariant v3.15.2 [INFO] [stderr] Checking egui_extras v0.29.1 [INFO] [stderr] Checking smithay-client-toolkit v0.19.2 [INFO] [stderr] Checking zbus_names v2.6.1 [INFO] [stderr] Checking nalgebra v0.32.6 [INFO] [stderr] Checking zbus v3.15.2 [INFO] [stderr] Checking sctk-adwaita v0.10.1 [INFO] [stderr] Checking smithay-clipboard v0.7.2 [INFO] [stderr] Checking copypasta v0.10.1 [INFO] [stderr] Checking winit v0.30.5 [INFO] [stderr] Checking atspi-common v0.3.0 [INFO] [stderr] Checking statrs v0.17.1 [INFO] [stderr] Checking bio v2.0.1 [INFO] [stderr] Checking atspi-proxies v0.3.0 [INFO] [stderr] Checking accesskit_atspi_common v0.9.1 [INFO] [stderr] Checking atspi-connection v0.3.0 [INFO] [stderr] Checking atspi v0.19.0 [INFO] [stderr] Checking accesskit_unix v0.12.1 [INFO] [stderr] Checking accesskit_winit v0.22.1 [INFO] [stderr] Checking egui-winit v0.29.1 [INFO] [stderr] Checking eframe v0.29.1 [INFO] [stdout] warning: unused import: `sync::Arc` [INFO] [stdout] --> src/main.rs:22:45 [INFO] [stdout] | [INFO] [stdout] 22 | use std::{env, path::PathBuf, str::FromStr, sync::Arc}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::alignment::Alignment` [INFO] [stdout] --> src/main.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | use bio::alignment::Alignment; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `CloneStatus` [INFO] [stdout] --> src/main.rs:26:15 [INFO] [stdout] | [INFO] [stdout] 26 | use cloning::{CloneStatus, CloningInsertData}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `copypasta::ClipboardProvider` [INFO] [stdout] --> src/main.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 27 | use copypasta::ClipboardProvider; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `FileDialogConfig` and `FileDialog` [INFO] [stdout] --> src/main.rs:32:24 [INFO] [stdout] | [INFO] [stdout] 32 | use egui_file_dialog::{FileDialog, FileDialogConfig}; [INFO] [stdout] | ^^^^^^^^^^ ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `AminoAcid`, `ReMatch`, and `ligation::LigationFragment` [INFO] [stdout] --> src/main.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | ligation::LigationFragment, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 37 | restriction_enzyme::{ReMatch, RestrictionEnzyme}, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] 38 | AaIdent, AminoAcid, Nucleotide, Seq, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `protein::Protein` [INFO] [stdout] --> src/main.rs:40:5 [INFO] [stdout] | [INFO] [stdout] 40 | use protein::Protein; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `reading_frame::ReadingFrameMatch` [INFO] [stdout] --> src/main.rs:41:5 [INFO] [stdout] | [INFO] [stdout] 41 | use reading_frame::ReadingFrameMatch; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Backbone`, `DEFAULT_DNA_FILE`, `DEFAULT_FASTA_FILE`, `DEFAULT_GENBANK_FILE`, `GenericData`, `PolymeraseType`, `Primer`, `SearchMatch`, `cloning::BackboneSelected`, and `tags::TagMatch` [INFO] [stdout] --> src/main.rs:45:17 [INFO] [stdout] | [INFO] [stdout] 45 | backbones::{Backbone, BackboneFilters}, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 46 | cloning::BackboneSelected, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 47 | file_io::{ [INFO] [stdout] 48 | save::{DEFAULT_DNA_FILE, DEFAULT_FASTA_FILE, DEFAULT_GENBANK_FILE, DEFAULT_PREFS_FILE}, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 49 | FileDialogs, GenericData, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 52 | misc_types::{FeatureDirection, FeatureType, SearchMatch}, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] 53 | pcr::{PcrUi, PolymeraseType}, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] 54 | primer::{Primer, TM_TARGET}, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] 55 | tags::TagMatch, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `make_cloning_primers` [INFO] [stdout] --> src/backbones.rs:24:9 [INFO] [stdout] | [INFO] [stdout] 24 | make_cloning_primers, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::PathBuf` [INFO] [stdout] --> src/gui/mod.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use std::path::PathBuf; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::borrow::Cow` [INFO] [stdout] --> src/gui/cloning.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::borrow::Cow; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Grid` and `Vec2` [INFO] [stdout] --> src/gui/cloning.rs:5:31 [INFO] [stdout] | [INFO] [stdout] 5 | Color32, ComboBox, Frame, Grid, RichText, ScrollArea, Stroke, TextEdit, Ui, Vec2, [INFO] [stdout] | ^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `insert_into_seq` [INFO] [stdout] --> src/gui/cloning.rs:7:14 [INFO] [stdout] | [INFO] [stdout] 7 | use na_seq::{insert_into_seq, seq_from_str, seq_to_str_lower, Nucleotide}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `FeatureType` [INFO] [stdout] --> src/gui/cloning.rs:25:27 [INFO] [stdout] | [INFO] [stdout] 25 | misc_types::{Feature, FeatureType}, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `path::PathBuf` [INFO] [stdout] --> src/gui/input.rs:3:16 [INFO] [stdout] | [INFO] [stdout] 3 | use std::{mem, path::PathBuf}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `QUICKSAVE_FILE` and `StateToSave` [INFO] [stdout] --> src/gui/input.rs:11:29 [INFO] [stdout] | [INFO] [stdout] 11 | save::{load_import, StateToSave, QUICKSAVE_FILE}, [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `path::PathBuf` [INFO] [stdout] --> src/gui/ligation.rs:3:33 [INFO] [stdout] | [INFO] [stdout] 3 | use std::{collections::HashMap, path::PathBuf}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ligation` [INFO] [stdout] --> src/gui/ligation.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | ligation, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `state::State` [INFO] [stdout] --> src/gui/lin_maps.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | state::State, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> src/gui/lin_maps.rs:55:5 [INFO] [stdout] | [INFO] [stdout] 55 | /// Used to assist with splitting features around the origin [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 56 | let stroke = Stroke::new(FEATURE_STROKE_WIDTH, stroke_color); [INFO] [stdout] | ------------------------------------------------------------- rustdoc does not generate documentation for statements [INFO] [stdout] | [INFO] [stdout] = help: use `//` for a plain comment [INFO] [stdout] = note: `#[warn(unused_doc_comments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Color32` [INFO] [stdout] --> src/gui/pcr.rs:3:20 [INFO] [stdout] | [INFO] [stdout] 3 | use eframe::egui::{Color32, ComboBox, Grid, RichText, TextEdit, Ui, Vec2}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Tab` [INFO] [stdout] --> src/pcr.rs:7:38 [INFO] [stdout] | [INFO] [stdout] 7 | gui::navigation::{Page, PageSeq, Tab}, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::protein::proteins_from_seq` [INFO] [stdout] --> src/toxic_proteins.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use crate::protein::proteins_from_seq; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Tab` [INFO] [stdout] --> src/util.rs:20:22 [INFO] [stdout] | [INFO] [stdout] 20 | navigation::{Tab, DEFAULT_TAB_NAME}, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `sync::Arc` [INFO] [stdout] --> src/main.rs:22:45 [INFO] [stdout] | [INFO] [stdout] 22 | use std::{env, path::PathBuf, str::FromStr, sync::Arc}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bio::alignment::Alignment` [INFO] [stdout] --> src/main.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | use bio::alignment::Alignment; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `CloneStatus` [INFO] [stdout] --> src/main.rs:26:15 [INFO] [stdout] | [INFO] [stdout] 26 | use cloning::{CloneStatus, CloningInsertData}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `copypasta::ClipboardProvider` [INFO] [stdout] --> src/main.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 27 | use copypasta::ClipboardProvider; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `FileDialogConfig` and `FileDialog` [INFO] [stdout] --> src/main.rs:32:24 [INFO] [stdout] | [INFO] [stdout] 32 | use egui_file_dialog::{FileDialog, FileDialogConfig}; [INFO] [stdout] | ^^^^^^^^^^ ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `AminoAcid`, `ReMatch`, and `ligation::LigationFragment` [INFO] [stdout] --> src/main.rs:36:5 [INFO] [stdout] | [INFO] [stdout] 36 | ligation::LigationFragment, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 37 | restriction_enzyme::{ReMatch, RestrictionEnzyme}, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] 38 | AaIdent, AminoAcid, Nucleotide, Seq, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `protein::Protein` [INFO] [stdout] --> src/main.rs:40:5 [INFO] [stdout] | [INFO] [stdout] 40 | use protein::Protein; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `reading_frame::ReadingFrameMatch` [INFO] [stdout] --> src/main.rs:41:5 [INFO] [stdout] | [INFO] [stdout] 41 | use reading_frame::ReadingFrameMatch; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Backbone`, `DEFAULT_DNA_FILE`, `DEFAULT_FASTA_FILE`, `DEFAULT_GENBANK_FILE`, `GenericData`, `PolymeraseType`, `Primer`, `SearchMatch`, `cloning::BackboneSelected`, and `tags::TagMatch` [INFO] [stdout] --> src/main.rs:45:17 [INFO] [stdout] | [INFO] [stdout] 45 | backbones::{Backbone, BackboneFilters}, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 46 | cloning::BackboneSelected, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 47 | file_io::{ [INFO] [stdout] 48 | save::{DEFAULT_DNA_FILE, DEFAULT_FASTA_FILE, DEFAULT_GENBANK_FILE, DEFAULT_PREFS_FILE}, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 49 | FileDialogs, GenericData, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 52 | misc_types::{FeatureDirection, FeatureType, SearchMatch}, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] 53 | pcr::{PcrUi, PolymeraseType}, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] 54 | primer::{Primer, TM_TARGET}, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] 55 | tags::TagMatch, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `make_cloning_primers` [INFO] [stdout] --> src/backbones.rs:24:9 [INFO] [stdout] | [INFO] [stdout] 24 | make_cloning_primers, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::PathBuf` [INFO] [stdout] --> src/gui/mod.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use std::path::PathBuf; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::borrow::Cow` [INFO] [stdout] --> src/gui/cloning.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::borrow::Cow; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Grid` and `Vec2` [INFO] [stdout] --> src/gui/cloning.rs:5:31 [INFO] [stdout] | [INFO] [stdout] 5 | Color32, ComboBox, Frame, Grid, RichText, ScrollArea, Stroke, TextEdit, Ui, Vec2, [INFO] [stdout] | ^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `insert_into_seq` [INFO] [stdout] --> src/gui/cloning.rs:7:14 [INFO] [stdout] | [INFO] [stdout] 7 | use na_seq::{insert_into_seq, seq_from_str, seq_to_str_lower, Nucleotide}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `FeatureType` [INFO] [stdout] --> src/gui/cloning.rs:25:27 [INFO] [stdout] | [INFO] [stdout] 25 | misc_types::{Feature, FeatureType}, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `path::PathBuf` [INFO] [stdout] --> src/gui/input.rs:3:16 [INFO] [stdout] | [INFO] [stdout] 3 | use std::{mem, path::PathBuf}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `QUICKSAVE_FILE` and `StateToSave` [INFO] [stdout] --> src/gui/input.rs:11:29 [INFO] [stdout] | [INFO] [stdout] 11 | save::{load_import, StateToSave, QUICKSAVE_FILE}, [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `path::PathBuf` [INFO] [stdout] --> src/gui/ligation.rs:3:33 [INFO] [stdout] | [INFO] [stdout] 3 | use std::{collections::HashMap, path::PathBuf}; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ligation` [INFO] [stdout] --> src/gui/ligation.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | ligation, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `state::State` [INFO] [stdout] --> src/gui/lin_maps.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | state::State, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> src/gui/lin_maps.rs:55:5 [INFO] [stdout] | [INFO] [stdout] 55 | /// Used to assist with splitting features around the origin [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 56 | let stroke = Stroke::new(FEATURE_STROKE_WIDTH, stroke_color); [INFO] [stdout] | ------------------------------------------------------------- rustdoc does not generate documentation for statements [INFO] [stdout] | [INFO] [stdout] = help: use `//` for a plain comment [INFO] [stdout] = note: `#[warn(unused_doc_comments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Color32` [INFO] [stdout] --> src/gui/pcr.rs:3:20 [INFO] [stdout] | [INFO] [stdout] 3 | use eframe::egui::{Color32, ComboBox, Grid, RichText, TextEdit, Ui, Vec2}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Tab` [INFO] [stdout] --> src/pcr.rs:7:38 [INFO] [stdout] | [INFO] [stdout] 7 | gui::navigation::{Page, PageSeq, Tab}, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::protein::proteins_from_seq` [INFO] [stdout] --> src/toxic_proteins.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use crate::protein::proteins_from_seq; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Tab` [INFO] [stdout] --> src/util.rs:20:22 [INFO] [stdout] | [INFO] [stdout] 20 | navigation::{Tab, DEFAULT_TAB_NAME}, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `chrono::NaiveDate::from_ymd`: use `from_ymd_opt()` instead [INFO] [stdout] --> src/gui/metadata.rs:90:39 [INFO] [stdout] | [INFO] [stdout] 90 | let date = NaiveDate::from_ymd(date.0, date.1.into(), date.2.into()); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `chrono::NaiveDate::from_ymd`: use `from_ymd_opt()` instead [INFO] [stdout] --> src/gui/metadata.rs:90:39 [INFO] [stdout] | [INFO] [stdout] 90 | let date = NaiveDate::from_ymd(date.0, date.1.into(), date.2.into()); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/backbones.rs:171:13 [INFO] [stdout] | [INFO] [stdout] 171 | let mut his_tag = None; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `best_primer_composite` [INFO] [stdout] --> src/backbones.rs:237:33 [INFO] [stdout] | [INFO] [stdout] 237 | let mut best_primer_composite = 0.; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_best_primer_composite` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `best_primer_i` [INFO] [stdout] --> src/backbones.rs:238:33 [INFO] [stdout] | [INFO] [stdout] 238 | let mut best_primer_i = loc; [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_best_primer_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/backbones.rs:237:29 [INFO] [stdout] | [INFO] [stdout] 237 | let mut best_primer_composite = 0.; [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/backbones.rs:238:29 [INFO] [stdout] | [INFO] [stdout] 238 | let mut best_primer_i = loc; [INFO] [stdout] | ----^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `host` [INFO] [stdout] --> src/backbones.rs:341:25 [INFO] [stdout] | [INFO] [stdout] 341 | if let Some(host) = self.host {} [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_host` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `re_lib` [INFO] [stdout] --> src/cloning.rs:83:9 [INFO] [stdout] | [INFO] [stdout] 83 | re_lib: &[RestrictionEnzyme], [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_re_lib` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cloning.rs:252:9 [INFO] [stdout] | [INFO] [stdout] 252 | let mut insert = state.ui.cloning_insert.seq_insert.clone(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/backbones.rs:171:13 [INFO] [stdout] | [INFO] [stdout] 171 | let mut his_tag = None; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `best_primer_composite` [INFO] [stdout] --> src/backbones.rs:237:33 [INFO] [stdout] | [INFO] [stdout] 237 | let mut best_primer_composite = 0.; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_best_primer_composite` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `best_primer_i` [INFO] [stdout] --> src/backbones.rs:238:33 [INFO] [stdout] | [INFO] [stdout] 238 | let mut best_primer_i = loc; [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_best_primer_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/backbones.rs:237:29 [INFO] [stdout] | [INFO] [stdout] 237 | let mut best_primer_composite = 0.; [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/backbones.rs:238:29 [INFO] [stdout] | [INFO] [stdout] 238 | let mut best_primer_i = loc; [INFO] [stdout] | ----^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `host` [INFO] [stdout] --> src/backbones.rs:341:25 [INFO] [stdout] | [INFO] [stdout] 341 | if let Some(host) = self.host {} [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_host` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `re_lib` [INFO] [stdout] --> src/cloning.rs:83:9 [INFO] [stdout] | [INFO] [stdout] 83 | re_lib: &[RestrictionEnzyme], [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_re_lib` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/cloning.rs:252:9 [INFO] [stdout] | [INFO] [stdout] 252 | let mut insert = state.ui.cloning_insert.seq_insert.clone(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `elem_num` [INFO] [stdout] --> src/file_io/ab1.rs:350:35 [INFO] [stdout] | [INFO] [stdout] 350 | fn parse_tag_data(elem_code: u16, elem_num: usize, data: &[u8]) -> io::Result { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elem_num` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `elem_num` [INFO] [stdout] --> src/file_io/ab1.rs:350:35 [INFO] [stdout] | [INFO] [stdout] 350 | fn parse_tag_data(elem_code: u16, elem_num: usize, data: &[u8]) -> io::Result { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elem_num` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num_nts` [INFO] [stdout] --> src/gui/ab1.rs:48:29 [INFO] [stdout] | [INFO] [stdout] 48 | fn index_to_posit(i: usize, num_nts: usize, ui: &Ui) -> f32 { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_nts` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ui` [INFO] [stdout] --> src/gui/ab1.rs:48:45 [INFO] [stdout] | [INFO] [stdout] 48 | fn index_to_posit(i: usize, num_nts: usize, ui: &Ui) -> f32 { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_ui` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `fonts` [INFO] [stdout] --> src/gui/ab1.rs:159:41 [INFO] [stdout] | [INFO] [stdout] 159 | result.push(ui.ctx().fonts(|fonts| { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_fonts` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rect_size` [INFO] [stdout] --> src/gui/ab1.rs:270:17 [INFO] [stdout] | [INFO] [stdout] 270 | let rect_size = response.rect.size(); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rect_size` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `border_width` [INFO] [stdout] --> src/gui/cloning.rs:216:21 [INFO] [stdout] | [INFO] [stdout] 216 | let mut border_width = 0.; [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_border_width` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num_nts` [INFO] [stdout] --> src/gui/ab1.rs:48:29 [INFO] [stdout] | [INFO] [stdout] 48 | fn index_to_posit(i: usize, num_nts: usize, ui: &Ui) -> f32 { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_nts` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ui` [INFO] [stdout] --> src/gui/ab1.rs:48:45 [INFO] [stdout] | [INFO] [stdout] 48 | fn index_to_posit(i: usize, num_nts: usize, ui: &Ui) -> f32 { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_ui` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `fonts` [INFO] [stdout] --> src/gui/ab1.rs:159:41 [INFO] [stdout] | [INFO] [stdout] 159 | result.push(ui.ctx().fonts(|fonts| { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_fonts` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/gui/cloning.rs:216:17 [INFO] [stdout] | [INFO] [stdout] 216 | let mut border_width = 0.; [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rect_size` [INFO] [stdout] --> src/gui/ab1.rs:270:17 [INFO] [stdout] | [INFO] [stdout] 270 | let rect_size = response.rect.size(); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rect_size` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pasted_text` [INFO] [stdout] --> src/gui/input.rs:135:30 [INFO] [stdout] | [INFO] [stdout] 135 | Event::Paste(pasted_text) => {} [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_pasted_text` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `border_width` [INFO] [stdout] --> src/gui/cloning.rs:216:21 [INFO] [stdout] | [INFO] [stdout] 216 | let mut border_width = 0.; [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_border_width` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/gui/cloning.rs:216:17 [INFO] [stdout] | [INFO] [stdout] 216 | let mut border_width = 0.; [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/metadata.rs:156:17 [INFO] [stdout] | [INFO] [stdout] 156 | let response = ui.add( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pasted_text` [INFO] [stdout] --> src/gui/input.rs:135:30 [INFO] [stdout] | [INFO] [stdout] 135 | Event::Paste(pasted_text) => {} [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_pasted_text` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/metadata.rs:156:17 [INFO] [stdout] | [INFO] [stdout] 156 | let response = ui.add( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `note` [INFO] [stdout] --> src/gui/sequence/mod.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | for note in &feature.notes { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_note` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq_len` [INFO] [stdout] --> src/gui/sequence/mod.rs:66:46 [INFO] [stdout] | [INFO] [stdout] 66 | fn primer_text(i: usize, primers: &[Primer], seq_len: usize, ui: &mut Ui) { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seq_len` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `note` [INFO] [stdout] --> src/gui/sequence/mod.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | for note in &feature.notes { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_note` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq_len` [INFO] [stdout] --> src/gui/sequence/mod.rs:66:46 [INFO] [stdout] | [INFO] [stdout] 66 | fn primer_text(i: usize, primers: &[Primer], seq_len: usize, ui: &mut Ui) { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seq_len` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/portions.rs:21:13 [INFO] [stdout] | [INFO] [stdout] 21 | let mut result = Self { [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/portions.rs:21:13 [INFO] [stdout] | [INFO] [stdout] 21 | let mut result = Self { [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/protein.rs:146:26 [INFO] [stdout] | [INFO] [stdout] 146 | pub fn tango_aggregation(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/protein.rs:150:18 [INFO] [stdout] | [INFO] [stdout] 150 | pub fn aggrescan(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/tags.rs:32:26 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn _find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `lib` [INFO] [stdout] --> src/tags.rs:32:46 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn _find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_lib` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/tags.rs:33:9 [INFO] [stdout] | [INFO] [stdout] 33 | let mut result = Vec::new(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/protein.rs:146:26 [INFO] [stdout] | [INFO] [stdout] 146 | pub fn tango_aggregation(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/protein.rs:150:18 [INFO] [stdout] | [INFO] [stdout] 150 | pub fn aggrescan(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `BoundedLevenshtein` is never constructed [INFO] [stdout] --> src/alignment.rs:52:5 [INFO] [stdout] | [INFO] [stdout] 48 | pub enum DistanceType { [INFO] [stdout] | ------------ variant in this enum [INFO] [stdout] ... [INFO] [stdout] 52 | BoundedLevenshtein(u32), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `DistanceType` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/tags.rs:32:26 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn _find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `lib` [INFO] [stdout] --> src/tags.rs:32:46 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn _find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_lib` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variants `Gfp` and `Luciferase` are never constructed [INFO] [stdout] --> src/backbones.rs:121:5 [INFO] [stdout] | [INFO] [stdout] 120 | pub enum BackboneGene { [INFO] [stdout] | ------------ variants in this enum [INFO] [stdout] 121 | Gfp, [INFO] [stdout] | ^^^ [INFO] [stdout] 122 | Egfp, [INFO] [stdout] 123 | Luciferase, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `BackboneGene` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/tags.rs:33:9 [INFO] [stdout] | [INFO] [stdout] 33 | let mut result = Vec::new(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `RestrictionEnzyme` is never constructed [INFO] [stdout] --> src/backbones.rs:131:5 [INFO] [stdout] | [INFO] [stdout] 130 | pub enum CloningTechnique { [INFO] [stdout] | ---------------- variant in this enum [INFO] [stdout] 131 | RestrictionEnzyme, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `CloningTechnique` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `genes_included` and `direction` are never read [INFO] [stdout] --> src/backbones.rs:151:9 [INFO] [stdout] | [INFO] [stdout] 135 | pub struct Backbone { [INFO] [stdout] | -------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 151 | pub genes_included: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 157 | pub direction: PrimerDirection, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `product_primers` is never read [INFO] [stdout] --> src/cloning.rs:53:9 [INFO] [stdout] | [INFO] [stdout] 37 | pub struct CloningState { [INFO] [stdout] | ------------ field in this struct [INFO] [stdout] ... [INFO] [stdout] 53 | pub product_primers: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `get_backbone` is never used [INFO] [stdout] --> src/cloning.rs:137:12 [INFO] [stdout] | [INFO] [stdout] 75 | impl CloningState { [INFO] [stdout] | ----------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 137 | pub fn get_backbone<'a>(&'a self, lib: &'a [Backbone]) -> Option<&'a Backbone> { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `find_re_candidates` is never used [INFO] [stdout] --> src/cloning.rs:360:8 [INFO] [stdout] | [INFO] [stdout] 360 | pub fn find_re_candidates<'a>( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `query_id`, `result_type`, and `total_count` are never read [INFO] [stdout] --> src/external_websites.rs:162:5 [INFO] [stdout] | [INFO] [stdout] 161 | struct PdbSearchResults { [INFO] [stdout] | ---------------- fields in this struct [INFO] [stdout] 162 | query_id: String, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 163 | result_type: String, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] 164 | total_count: u32, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `PdbSearchResults` has derived impls for the traits `Default` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `file_version`, `tag_name`, `tag_number`, `element_type_code`, and `data_size` are never read [INFO] [stdout] --> src/file_io/ab1.rs:24:9 [INFO] [stdout] | [INFO] [stdout] 23 | struct Header { [INFO] [stdout] | ------ fields in this struct [INFO] [stdout] 24 | pub file_version: u16, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] 25 | pub tag_name: Seq, // 4 bytes always. [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 26 | pub tag_number: u32, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] 27 | pub element_type_code: u16, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 30 | pub data_size: u32, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Header` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `a` and `b` are never read [INFO] [stdout] --> src/file_io/ab1.rs:56:9 [INFO] [stdout] | [INFO] [stdout] 51 | struct Dir { [INFO] [stdout] | --- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 56 | pub a: u16, // placeholder [INFO] [stdout] | ^ [INFO] [stdout] ... [INFO] [stdout] 60 | pub b: u32, // placeholder [INFO] [stdout] | ^ [INFO] [stdout] | [INFO] [stdout] = note: `Dir` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `trim` is never read [INFO] [stdout] --> src/file_io/ab1.rs:84:5 [INFO] [stdout] | [INFO] [stdout] 82 | struct AbiIterator { [INFO] [stdout] | ----------- field in this struct [INFO] [stdout] 83 | stream: R, [INFO] [stdout] 84 | trim: bool, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `AbiIterator` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_abi_tag` is never used [INFO] [stdout] --> src/file_io/ab1.rs:279:4 [INFO] [stdout] | [INFO] [stdout] 279 | fn parse_abi_tag(data: &[u8]) -> io::Result<(String, String)> { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `abi_trim` is never used [INFO] [stdout] --> src/file_io/ab1.rs:289:4 [INFO] [stdout] | [INFO] [stdout] 289 | fn abi_trim(seq_record: &fastq::Record) -> fastq::Record { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `0` is never read [INFO] [stdout] --> src/file_io/ab1.rs:346:9 [INFO] [stdout] | [INFO] [stdout] 346 | U32(Vec), [INFO] [stdout] | --- ^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `TagData` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 346 | U32(()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `U8` is never constructed [INFO] [stdout] --> src/file_io/ab1.rs:344:5 [INFO] [stdout] | [INFO] [stdout] 343 | enum TagData { [INFO] [stdout] | ------- variant in this enum [INFO] [stdout] 344 | U8(Vec), [INFO] [stdout] | ^^ [INFO] [stdout] | [INFO] [stdout] = note: `TagData` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `read_string` is never used [INFO] [stdout] --> src/file_io/ab1.rs:401:4 [INFO] [stdout] | [INFO] [stdout] 401 | fn read_string(reader: &mut R, length: usize) -> io::Result { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `TagSeqRecord` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | enum TagSeqRecord { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 13 | impl TagSeqRecord { [INFO] [stdout] | ----------------- associated function in this implementation [INFO] [stdout] 14 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `GeneralTag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:26:6 [INFO] [stdout] | [INFO] [stdout] 26 | enum GeneralTag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:117:8 [INFO] [stdout] | [INFO] [stdout] 116 | impl GeneralTag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 117 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Abi3130Tag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:221:6 [INFO] [stdout] | [INFO] [stdout] 221 | enum Abi3130Tag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:231:8 [INFO] [stdout] | [INFO] [stdout] 230 | impl Abi3130Tag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 231 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Abi3530Tag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:263:6 [INFO] [stdout] | [INFO] [stdout] 263 | enum Abi3530Tag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:371:8 [INFO] [stdout] | [INFO] [stdout] 370 | impl Abi3530Tag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 371 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Abi3730Tag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:599:6 [INFO] [stdout] | [INFO] [stdout] 599 | enum Abi3730Tag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:604:8 [INFO] [stdout] | [INFO] [stdout] 603 | impl Abi3730Tag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 604 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `save_new_product` is never used [INFO] [stdout] --> src/file_io/save.rs:266:8 [INFO] [stdout] | [INFO] [stdout] 266 | pub fn save_new_product(name: &str, state: &mut State, ui: &mut Ui) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `NT_COLOR` is never used [INFO] [stdout] --> src/gui/ab1.rs:24:7 [INFO] [stdout] | [INFO] [stdout] 24 | const NT_COLOR: Color32 = Color32::from_rgb(180, 220, 220); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `val_5p` and `val_3p` are never used [INFO] [stdout] --> src/primer.rs:476:12 [INFO] [stdout] | [INFO] [stdout] 457 | impl TuneSetting { [INFO] [stdout] | ---------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 476 | pub fn val_5p(&self) -> Option { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 485 | pub fn val_3p(&self) -> Option { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `tango_aggregation` is never used [INFO] [stdout] --> src/protein.rs:146:8 [INFO] [stdout] | [INFO] [stdout] 146 | pub fn tango_aggregation(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `aggrescan` is never used [INFO] [stdout] --> src/protein.rs:150:8 [INFO] [stdout] | [INFO] [stdout] 150 | pub fn aggrescan(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `tag_matches` is never read [INFO] [stdout] --> src/state.rs:482:9 [INFO] [stdout] | [INFO] [stdout] 478 | pub struct StateVolatile { [INFO] [stdout] | ------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 482 | pub tag_matches: Vec, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `lib_index` and `seq` are never read [INFO] [stdout] --> src/tags.rs:8:9 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct TagMatch { [INFO] [stdout] | -------- fields in this struct [INFO] [stdout] 8 | pub lib_index: usize, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 11 | pub seq: RangeInclusive, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Tag` is never constructed [INFO] [stdout] --> src/tags.rs:14:12 [INFO] [stdout] | [INFO] [stdout] 14 | pub struct Tag { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/tags.rs:21:12 [INFO] [stdout] | [INFO] [stdout] 20 | impl Tag { [INFO] [stdout] | -------- associated function in this implementation [INFO] [stdout] 21 | pub fn new(name: &str) -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `GLN_TRACT_SCAN_FRAME` is never used [INFO] [stdout] --> src/toxic_proteins.rs:10:7 [INFO] [stdout] | [INFO] [stdout] 10 | const GLN_TRACT_SCAN_FRAME: usize = 35; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `GLN_MAX_PORTION` is never used [INFO] [stdout] --> src/toxic_proteins.rs:11:7 [INFO] [stdout] | [INFO] [stdout] 11 | const GLN_MAX_PORTION: f32 = 0.75; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `ToxicStatus` is never used [INFO] [stdout] --> src/toxic_proteins.rs:14:6 [INFO] [stdout] | [INFO] [stdout] 14 | enum ToxicStatus { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_glu_tracts` is never used [INFO] [stdout] --> src/toxic_proteins.rs:27:4 [INFO] [stdout] | [INFO] [stdout] 27 | fn check_glu_tracts(seq: &[Nucleotide]) -> ToxicStatus { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `FEATURE_ANNOTATION_MATCH_THRESH` is never used [INFO] [stdout] --> src/util.rs:29:7 [INFO] [stdout] | [INFO] [stdout] 29 | const FEATURE_ANNOTATION_MATCH_THRESH: f32 = 0.95; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `BoundedLevenshtein` is never constructed [INFO] [stdout] --> src/alignment.rs:52:5 [INFO] [stdout] | [INFO] [stdout] 48 | pub enum DistanceType { [INFO] [stdout] | ------------ variant in this enum [INFO] [stdout] ... [INFO] [stdout] 52 | BoundedLevenshtein(u32), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `DistanceType` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variants `Gfp` and `Luciferase` are never constructed [INFO] [stdout] --> src/backbones.rs:121:5 [INFO] [stdout] | [INFO] [stdout] 120 | pub enum BackboneGene { [INFO] [stdout] | ------------ variants in this enum [INFO] [stdout] 121 | Gfp, [INFO] [stdout] | ^^^ [INFO] [stdout] 122 | Egfp, [INFO] [stdout] 123 | Luciferase, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `BackboneGene` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `RestrictionEnzyme` is never constructed [INFO] [stdout] --> src/backbones.rs:131:5 [INFO] [stdout] | [INFO] [stdout] 130 | pub enum CloningTechnique { [INFO] [stdout] | ---------------- variant in this enum [INFO] [stdout] 131 | RestrictionEnzyme, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `CloningTechnique` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `genes_included` and `direction` are never read [INFO] [stdout] --> src/backbones.rs:151:9 [INFO] [stdout] | [INFO] [stdout] 135 | pub struct Backbone { [INFO] [stdout] | -------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 151 | pub genes_included: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 157 | pub direction: PrimerDirection, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `product_primers` is never read [INFO] [stdout] --> src/cloning.rs:53:9 [INFO] [stdout] | [INFO] [stdout] 37 | pub struct CloningState { [INFO] [stdout] | ------------ field in this struct [INFO] [stdout] ... [INFO] [stdout] 53 | pub product_primers: Vec, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `get_backbone` is never used [INFO] [stdout] --> src/cloning.rs:137:12 [INFO] [stdout] | [INFO] [stdout] 75 | impl CloningState { [INFO] [stdout] | ----------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 137 | pub fn get_backbone<'a>(&'a self, lib: &'a [Backbone]) -> Option<&'a Backbone> { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `find_re_candidates` is never used [INFO] [stdout] --> src/cloning.rs:360:8 [INFO] [stdout] | [INFO] [stdout] 360 | pub fn find_re_candidates<'a>( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `query_id`, `result_type`, and `total_count` are never read [INFO] [stdout] --> src/external_websites.rs:162:5 [INFO] [stdout] | [INFO] [stdout] 161 | struct PdbSearchResults { [INFO] [stdout] | ---------------- fields in this struct [INFO] [stdout] 162 | query_id: String, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 163 | result_type: String, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] 164 | total_count: u32, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `PdbSearchResults` has derived impls for the traits `Default` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `file_version`, `tag_name`, `tag_number`, `element_type_code`, and `data_size` are never read [INFO] [stdout] --> src/file_io/ab1.rs:24:9 [INFO] [stdout] | [INFO] [stdout] 23 | struct Header { [INFO] [stdout] | ------ fields in this struct [INFO] [stdout] 24 | pub file_version: u16, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] 25 | pub tag_name: Seq, // 4 bytes always. [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 26 | pub tag_number: u32, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] 27 | pub element_type_code: u16, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 30 | pub data_size: u32, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Header` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `a` and `b` are never read [INFO] [stdout] --> src/file_io/ab1.rs:56:9 [INFO] [stdout] | [INFO] [stdout] 51 | struct Dir { [INFO] [stdout] | --- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 56 | pub a: u16, // placeholder [INFO] [stdout] | ^ [INFO] [stdout] ... [INFO] [stdout] 60 | pub b: u32, // placeholder [INFO] [stdout] | ^ [INFO] [stdout] | [INFO] [stdout] = note: `Dir` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `trim` is never read [INFO] [stdout] --> src/file_io/ab1.rs:84:5 [INFO] [stdout] | [INFO] [stdout] 82 | struct AbiIterator { [INFO] [stdout] | ----------- field in this struct [INFO] [stdout] 83 | stream: R, [INFO] [stdout] 84 | trim: bool, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `AbiIterator` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_abi_tag` is never used [INFO] [stdout] --> src/file_io/ab1.rs:279:4 [INFO] [stdout] | [INFO] [stdout] 279 | fn parse_abi_tag(data: &[u8]) -> io::Result<(String, String)> { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `abi_trim` is never used [INFO] [stdout] --> src/file_io/ab1.rs:289:4 [INFO] [stdout] | [INFO] [stdout] 289 | fn abi_trim(seq_record: &fastq::Record) -> fastq::Record { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `0` is never read [INFO] [stdout] --> src/file_io/ab1.rs:346:9 [INFO] [stdout] | [INFO] [stdout] 346 | U32(Vec), [INFO] [stdout] | --- ^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `TagData` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 346 | U32(()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `U8` is never constructed [INFO] [stdout] --> src/file_io/ab1.rs:344:5 [INFO] [stdout] | [INFO] [stdout] 343 | enum TagData { [INFO] [stdout] | ------- variant in this enum [INFO] [stdout] 344 | U8(Vec), [INFO] [stdout] | ^^ [INFO] [stdout] | [INFO] [stdout] = note: `TagData` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `read_string` is never used [INFO] [stdout] --> src/file_io/ab1.rs:401:4 [INFO] [stdout] | [INFO] [stdout] 401 | fn read_string(reader: &mut R, length: usize) -> io::Result { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `TagSeqRecord` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | enum TagSeqRecord { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 13 | impl TagSeqRecord { [INFO] [stdout] | ----------------- associated function in this implementation [INFO] [stdout] 14 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `GeneralTag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:26:6 [INFO] [stdout] | [INFO] [stdout] 26 | enum GeneralTag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:117:8 [INFO] [stdout] | [INFO] [stdout] 116 | impl GeneralTag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 117 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Abi3130Tag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:221:6 [INFO] [stdout] | [INFO] [stdout] 221 | enum Abi3130Tag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:231:8 [INFO] [stdout] | [INFO] [stdout] 230 | impl Abi3130Tag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 231 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Abi3530Tag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:263:6 [INFO] [stdout] | [INFO] [stdout] 263 | enum Abi3530Tag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:371:8 [INFO] [stdout] | [INFO] [stdout] 370 | impl Abi3530Tag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 371 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Abi3730Tag` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:599:6 [INFO] [stdout] | [INFO] [stdout] 599 | enum Abi3730Tag { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `from_str` is never used [INFO] [stdout] --> src/file_io/ab1_tags.rs:604:8 [INFO] [stdout] | [INFO] [stdout] 603 | impl Abi3730Tag { [INFO] [stdout] | --------------- associated function in this implementation [INFO] [stdout] 604 | fn from_str(inp: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `save_new_product` is never used [INFO] [stdout] --> src/file_io/save.rs:266:8 [INFO] [stdout] | [INFO] [stdout] 266 | pub fn save_new_product(name: &str, state: &mut State, ui: &mut Ui) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `NT_COLOR` is never used [INFO] [stdout] --> src/gui/ab1.rs:24:7 [INFO] [stdout] | [INFO] [stdout] 24 | const NT_COLOR: Color32 = Color32::from_rgb(180, 220, 220); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `val_5p` and `val_3p` are never used [INFO] [stdout] --> src/primer.rs:476:12 [INFO] [stdout] | [INFO] [stdout] 457 | impl TuneSetting { [INFO] [stdout] | ---------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 476 | pub fn val_5p(&self) -> Option { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 485 | pub fn val_3p(&self) -> Option { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `tango_aggregation` is never used [INFO] [stdout] --> src/protein.rs:146:8 [INFO] [stdout] | [INFO] [stdout] 146 | pub fn tango_aggregation(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `aggrescan` is never used [INFO] [stdout] --> src/protein.rs:150:8 [INFO] [stdout] | [INFO] [stdout] 150 | pub fn aggrescan(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `tag_matches` is never read [INFO] [stdout] --> src/state.rs:482:9 [INFO] [stdout] | [INFO] [stdout] 478 | pub struct StateVolatile { [INFO] [stdout] | ------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 482 | pub tag_matches: Vec, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `lib_index` and `seq` are never read [INFO] [stdout] --> src/tags.rs:8:9 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct TagMatch { [INFO] [stdout] | -------- fields in this struct [INFO] [stdout] 8 | pub lib_index: usize, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 11 | pub seq: RangeInclusive, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Tag` is never constructed [INFO] [stdout] --> src/tags.rs:14:12 [INFO] [stdout] | [INFO] [stdout] 14 | pub struct Tag { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/tags.rs:21:12 [INFO] [stdout] | [INFO] [stdout] 20 | impl Tag { [INFO] [stdout] | -------- associated function in this implementation [INFO] [stdout] 21 | pub fn new(name: &str) -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `GLN_TRACT_SCAN_FRAME` is never used [INFO] [stdout] --> src/toxic_proteins.rs:10:7 [INFO] [stdout] | [INFO] [stdout] 10 | const GLN_TRACT_SCAN_FRAME: usize = 35; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `GLN_MAX_PORTION` is never used [INFO] [stdout] --> src/toxic_proteins.rs:11:7 [INFO] [stdout] | [INFO] [stdout] 11 | const GLN_MAX_PORTION: f32 = 0.75; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `ToxicStatus` is never used [INFO] [stdout] --> src/toxic_proteins.rs:14:6 [INFO] [stdout] | [INFO] [stdout] 14 | enum ToxicStatus { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_glu_tracts` is never used [INFO] [stdout] --> src/toxic_proteins.rs:27:4 [INFO] [stdout] | [INFO] [stdout] 27 | fn check_glu_tracts(seq: &[Nucleotide]) -> ToxicStatus { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `FEATURE_ANNOTATION_MATCH_THRESH` is never used [INFO] [stdout] --> src/util.rs:29:7 [INFO] [stdout] | [INFO] [stdout] 29 | const FEATURE_ANNOTATION_MATCH_THRESH: f32 = 0.95; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 31s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v4.2.3 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2` [INFO] running `Command { std: "docker" "inspect" "a8ecc3579e607545d8220cebe9a69e4deb45e4a20844052bfbbe9e8140ed4236", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a8ecc3579e607545d8220cebe9a69e4deb45e4a20844052bfbbe9e8140ed4236", kill_on_drop: false }` [INFO] [stdout] a8ecc3579e607545d8220cebe9a69e4deb45e4a20844052bfbbe9e8140ed4236