[INFO] fetching crate deepbiop-cli 0.1.16...
[INFO] checking deepbiop-cli-0.1.16 against master#fffed276b51cf514622e8d3109d620501cc01670 for pr-134021
[INFO] extracting crate deepbiop-cli 0.1.16 into /workspace/builds/worker-2-tc1/source
[INFO] started tweaking crates.io crate deepbiop-cli 0.1.16
[INFO] finished tweaking crates.io crate deepbiop-cli 0.1.16
[INFO] tweaked toml for crates.io crate deepbiop-cli 0.1.16 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-cli 0.1.16 on toolchain fffed276b51cf514622e8d3109d620501cc01670
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+fffed276b51cf514622e8d3109d620501cc01670" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-cli 0.1.16 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+fffed276b51cf514622e8d3109d620501cc01670" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-csi v0.51.0
[INFO] [stderr]   Downloaded noodles-core v0.18.0
[INFO] [stderr]   Downloaded noodles v0.101.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.43.0
[INFO] [stderr]   Downloaded noodles-sam v0.79.0
[INFO] [stderr]   Downloaded malachite-bigint v0.2.3
[INFO] [stderr]   Downloaded serde_spanned v1.0.3
[INFO] [stderr]   Downloaded rustpython-parser-vendored v0.4.0
[INFO] [stderr]   Downloaded rustpython-parser-core v0.4.0
[INFO] [stderr]   Downloaded unic-emoji-char v0.9.0
[INFO] [stderr]   Downloaded unicode_names2_generator v1.3.0
[INFO] [stderr]   Downloaded integer-encoding v3.0.4
[INFO] [stderr]   Downloaded unic-ucd-ident v0.9.0
[INFO] [stderr]   Downloaded pyo3-macros v0.27.1
[INFO] [stderr]   Downloaded noodles-fastq v0.21.0
[INFO] [stderr]   Downloaded noodles-fasta v0.56.0
[INFO] [stderr]   Downloaded gemm-c64 v0.18.2
[INFO] [stderr]   Downloaded toml_writer v1.0.4
[INFO] [stderr]   Downloaded os_info v3.12.0
[INFO] [stderr]   Downloaded gemm-f64 v0.18.2
[INFO] [stderr]   Downloaded gemm-f32 v0.18.2
[INFO] [stderr]   Downloaded gemm-f16 v0.18.2
[INFO] [stderr]   Downloaded gemm-c32 v0.18.2
[INFO] [stderr]   Downloaded human-panic v2.0.4
[INFO] [stderr]   Downloaded flatbuffers v25.9.23
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded lexical v7.0.5
[INFO] [stderr]   Downloaded gemm v0.18.2
[INFO] [stderr]   Downloaded inventory v0.3.21
[INFO] [stderr]   Downloaded lz4_flex v0.11.5
[INFO] [stderr]   Downloaded deepbiop-core v0.1.16
[INFO] [stderr]   Downloaded float8 v0.4.2
[INFO] [stderr]   Downloaded libz-rs-sys v0.5.2
[INFO] [stderr]   Downloaded pyo3-stub-gen v0.17.0
[INFO] [stderr]   Downloaded pyo3-build-config v0.27.1
[INFO] [stderr]   Downloaded twox-hash v2.1.2
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded numpy v0.27.0
[INFO] [stderr]   Downloaded arrow-csv v57.0.0
[INFO] [stderr]   Downloaded arrow-string v57.0.0
[INFO] [stderr]   Downloaded arrow-row v57.0.0
[INFO] [stderr]   Downloaded safetensors v0.4.5
[INFO] [stderr]   Downloaded gemm-common v0.18.2
[INFO] [stderr]   Downloaded deepbiop-fa v0.1.16
[INFO] [stderr]   Downloaded pyo3-stub-gen-derive v0.17.0
[INFO] [stderr]   Downloaded rustpython-ast v0.4.0
[INFO] [stderr]   Downloaded thrift v0.17.0
[INFO] [stderr]   Downloaded toml v0.9.8
[INFO] [stderr]   Downloaded arrow-data v57.0.0
[INFO] [stderr]   Downloaded arrow-ord v57.0.0
[INFO] [stderr]   Downloaded arrow-arith v57.0.0
[INFO] [stderr]   Downloaded ug v0.5.0
[INFO] [stderr]   Downloaded bon v3.8.1
[INFO] [stderr]   Downloaded lexical-write-integer v1.0.6
[INFO] [stderr]   Downloaded noodles-bam v0.83.0
[INFO] [stderr]   Downloaded pyo3-ffi v0.27.1
[INFO] [stderr]   Downloaded arrow-json v57.0.0
[INFO] [stderr]   Downloaded zip v1.1.4
[INFO] [stderr]   Downloaded deepbiop-utils v0.1.16
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.27.1
[INFO] [stderr]   Downloaded arrow-select v57.0.0
[INFO] [stderr]   Downloaded arrow-schema v57.0.0
[INFO] [stderr]   Downloaded arrow v57.0.0
[INFO] [stderr]   Downloaded bon-macros v3.8.1
[INFO] [stderr]   Downloaded arrow-buffer v57.0.0
[INFO] [stderr]   Downloaded lexical-write-float v1.0.6
[INFO] [stderr]   Downloaded arrow-ipc v57.0.0
[INFO] [stderr]   Downloaded arrow-cast v57.0.0
[INFO] [stderr]   Downloaded pulp v0.21.5
[INFO] [stderr]   Downloaded rustpython-parser v0.4.0
[INFO] [stderr]   Downloaded zlib-rs v0.5.2
[INFO] [stderr]   Downloaded quick-xml v0.38.3
[INFO] [stderr]   Downloaded candle-core v0.9.2-alpha.1
[INFO] [stderr]   Downloaded arrow-array v57.0.0
[INFO] [stderr]   Downloaded unicode_names2 v1.3.0
[INFO] [stderr]   Downloaded deepbiop-fq v0.1.16
[INFO] [stderr]   Downloaded parquet v57.0.0
[INFO] [stderr]   Downloaded deepbiop-bam v0.1.16
[INFO] [stderr]   Downloaded pyo3 v0.27.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3a6becf2bc8dde7f3fa57ede90e4f284e72d296796fc446bbb1e2c7cc0530151" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] d256bcdf3bab6094040fc8378506357207f7db3bbaeaa24543a736502ef36ad8
[INFO] running `Command { std: "docker" "start" "d256bcdf3bab6094040fc8378506357207f7db3bbaeaa24543a736502ef36ad8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "d256bcdf3bab6094040fc8378506357207f7db3bbaeaa24543a736502ef36ad8" "/opt/rustwide/cargo-home/bin/cargo" "+fffed276b51cf514622e8d3109d620501cc01670" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d256bcdf3bab6094040fc8378506357207f7db3bbaeaa24543a736502ef36ad8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "d256bcdf3bab6094040fc8378506357207f7db3bbaeaa24543a736502ef36ad8" "/opt/rustwide/cargo-home/bin/cargo" "+fffed276b51cf514622e8d3109d620501cc01670" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking hashbrown v0.16.0
[INFO] [stderr]    Compiling target-lexicon v0.13.3
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking arrow-schema v57.0.0
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]     Checking simd-adler32 v0.3.7
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]    Compiling pulp v0.21.5
[INFO] [stderr]     Checking zlib-rs v0.5.2
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling malachite-nz v0.4.22
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling quote v1.0.41
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling syn v2.0.108
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]     Checking indexmap v2.12.0
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]    Compiling pyo3-build-config v0.27.1
[INFO] [stderr]    Compiling unicode-width v0.2.2
[INFO] [stderr]    Compiling getopts v0.2.24
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]    Compiling unic-common v0.9.0
[INFO] [stderr]    Compiling unic-char-range v0.9.0
[INFO] [stderr]    Compiling rustpython-parser-vendored v0.4.0
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]     Checking libz-rs-sys v0.5.2
[INFO] [stderr]    Compiling unic-char-property v0.9.0
[INFO] [stderr]     Checking flate2 v1.1.5
[INFO] [stderr]    Compiling unic-ucd-version v0.9.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling tiny-keccak v2.0.2
[INFO] [stderr]     Checking serde_json v1.0.145
[INFO] [stderr]    Compiling flatbuffers v25.9.23
[INFO] [stderr]    Compiling cc v1.2.44
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]     Checking chrono v0.4.42
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]     Checking atoi v2.0.0
[INFO] [stderr]     Checking noodles-bgzf v0.43.0
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]     Checking rand_core v0.9.3
[INFO] [stderr]     Checking winnow v0.7.13
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling unic-emoji-char v0.9.0
[INFO] [stderr]    Compiling pyo3-macros-backend v0.27.1
[INFO] [stderr]    Compiling pyo3-ffi v0.27.1
[INFO] [stderr]    Compiling pyo3 v0.27.1
[INFO] [stderr]    Compiling numpy v0.27.0
[INFO] [stderr]    Compiling unic-ucd-ident v0.9.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]     Checking toml_datetime v0.7.3
[INFO] [stderr]     Checking serde_spanned v1.0.3
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]    Compiling lalrpop-util v0.20.2
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]     Checking anstyle-query v1.1.4
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]     Checking toml_writer v1.0.4
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]     Checking brotli-decompressor v5.0.0
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]     Checking twox-hash v2.1.2
[INFO] [stderr]    Compiling zip v1.1.4
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]     Checking integer-encoding v3.0.4
[INFO] [stderr]     Checking lz4_flex v0.11.5
[INFO] [stderr]    Compiling malachite-base v0.4.22
[INFO] [stderr]     Checking memmap2 v0.9.9
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking thrift v0.17.0
[INFO] [stderr]     Checking inventory v0.3.21
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking lexical v7.0.5
[INFO] [stderr]     Checking unicode-linebreak v0.1.5
[INFO] [stderr]     Checking clap_builder v4.5.51
[INFO] [stderr]    Compiling object v0.37.3
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]     Checking colored v3.0.0
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]     Checking textwrap v0.16.2
[INFO] [stderr]     Checking gimli v0.32.3
[INFO] [stderr]     Checking rustc-demangle v0.1.26
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]     Checking uuid v1.18.1
[INFO] [stderr]     Checking jiff v0.2.15
[INFO] [stderr]     Checking brotli v8.0.2
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling unicode_names2_generator v1.3.0
[INFO] [stderr]    Compiling rustpython-parser v0.4.0
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]     Checking toml_parser v1.0.4
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]    Compiling unicode_names2 v1.3.0
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]     Checking noodles-core v0.18.0
[INFO] [stderr]     Checking noodles-csi v0.51.0
[INFO] [stderr]     Checking toml v0.9.8
[INFO] [stderr]     Checking noodles-fasta v0.56.0
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking noodles-sam v0.79.0
[INFO] [stderr]     Checking noodles-fastq v0.21.0
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]    Compiling darling_core v0.21.3
[INFO] [stderr]     Checking tempfile v3.23.0
[INFO] [stderr]     Checking env_filter v0.1.4
[INFO] [stderr]     Checking ctrlc v3.5.1
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/fffed276b51cf514622e8d3109d620501cc01670/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.108/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=305e124187629b01 -C extra-filename=-4574c699cb274bd0 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-43e32a25692bf44a.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-2c160e35ae4bb1e8.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-9533002ac35f5809.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `brotli` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/fffed276b51cf514622e8d3109d620501cc01670/bin/rustc --crate-name brotli --edition=2015 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/brotli-8.0.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc-stdlib"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc-stdlib", "benchmark", "billing", "default", "disable-timer", "disallow_large_window_size", "external-literal-probability", "ffi-api", "float64", "floating_point_context_mixing", "no-stdlib-ffi-binding", "pass-through-ffi-panics", "seccomp", "sha2", "simd", "std", "validation", "vector_scratch_space"))' -C metadata=fbe35411e319994e -C extra-filename=-bb56fd341e28385b --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern alloc_no_stdlib=/opt/rustwide/target/debug/deps/liballoc_no_stdlib-7b1bd6f28b6396be.rmeta --extern alloc_stdlib=/opt/rustwide/target/debug/deps/liballoc_stdlib-c67ef39ef9e0d8f1.rmeta --extern brotli_decompressor=/opt/rustwide/target/debug/deps/libbrotli_decompressor-b49ac68ef342ea51.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "d256bcdf3bab6094040fc8378506357207f7db3bbaeaa24543a736502ef36ad8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d256bcdf3bab6094040fc8378506357207f7db3bbaeaa24543a736502ef36ad8", kill_on_drop: false }`
[INFO] [stdout] d256bcdf3bab6094040fc8378506357207f7db3bbaeaa24543a736502ef36ad8
