[INFO] fetching crate rust-bio-tools 0.42.2...
[INFO] checking rust-bio-tools-0.42.2 against try#31561a63598a0f21fc74c024747ef1310fdd2eb2 for pr-133536
[INFO] extracting crate rust-bio-tools 0.42.2 into /workspace/builds/worker-2-tc2/source
[INFO] validating manifest of crates.io crate rust-bio-tools 0.42.2 on toolchain 31561a63598a0f21fc74c024747ef1310fdd2eb2
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+31561a63598a0f21fc74c024747ef1310fdd2eb2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-2-tc2/source/.cargo/config
[INFO] started tweaking crates.io crate rust-bio-tools 0.42.2
[INFO] finished tweaking crates.io crate rust-bio-tools 0.42.2
[INFO] tweaked toml for crates.io crate rust-bio-tools 0.42.2 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] crate crates.io crate rust-bio-tools 0.42.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+31561a63598a0f21fc74c024747ef1310fdd2eb2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+31561a63598a0f21fc74c024747ef1310fdd2eb2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 66a08acb0ca07f6ea128085746efaae8eca84db38825e5d35ab1a762bcb91fa7
[INFO] running `Command { std: "docker" "start" "-a" "66a08acb0ca07f6ea128085746efaae8eca84db38825e5d35ab1a762bcb91fa7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "66a08acb0ca07f6ea128085746efaae8eca84db38825e5d35ab1a762bcb91fa7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "66a08acb0ca07f6ea128085746efaae8eca84db38825e5d35ab1a762bcb91fa7", kill_on_drop: false }`
[INFO] [stdout] 66a08acb0ca07f6ea128085746efaae8eca84db38825e5d35ab1a762bcb91fa7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+31561a63598a0f21fc74c024747ef1310fdd2eb2" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 62b08ff92d87560fe696dcf2e721688edf96c17bc073a4a6076c53022850a8d7
[INFO] running `Command { std: "docker" "start" "-a" "62b08ff92d87560fe696dcf2e721688edf96c17bc073a4a6076c53022850a8d7", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling autocfg v1.2.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.79
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]     Checking log v0.4.21
[INFO] [stderr]    Compiling regex-syntax v0.8.3
[INFO] [stderr]     Checking futures v0.1.31
[INFO] [stderr]     Checking either v1.10.0
[INFO] [stderr]    Compiling semver-parser v0.7.0
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling serde v1.0.197
[INFO] [stderr]     Checking tinyvec_macros v0.1.1
[INFO] [stderr]     Checking tinyvec v1.6.0
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling slab v0.4.9
[INFO] [stderr]    Compiling clang-sys v1.7.0
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]    Compiling thiserror v1.0.58
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling autocfg v0.1.8
[INFO] [stderr]    Compiling libloading v0.8.3
[INFO] [stderr]     Checking rand_core v0.4.2
[INFO] [stderr]     Checking unicode-bidi v0.3.15
[INFO] [stderr]    Compiling syn v2.0.58
[INFO] [stderr]     Checking unicode-normalization v0.1.23
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling rustix v0.38.32
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]     Checking tokio-executor v0.1.10
[INFO] [stderr]    Compiling parking_lot_core v0.6.3
[INFO] [stderr]    Compiling memoffset v0.5.6
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling siphasher v0.3.11
[INFO] [stderr]    Compiling ppv-lite86 v0.2.17
[INFO] [stderr]    Compiling phf_shared v0.11.2
[INFO] [stderr]    Compiling parking_lot v0.9.0
[INFO] [stderr]     Checking smallvec v0.6.14
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]     Checking matches v0.1.10
[INFO] [stderr]     Checking hashbrown v0.14.3
[INFO] [stderr]    Compiling prettyplease v0.2.17
[INFO] [stderr]    Compiling jobserver v0.1.28
[INFO] [stderr]    Compiling getrandom v0.2.14
[INFO] [stderr]     Checking rand_core v0.3.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling unicase v2.7.0
[INFO] [stderr]     Checking iovec v0.1.4
[INFO] [stderr]     Checking num_cpus v1.16.0
[INFO] [stderr]    Compiling cc v1.0.92
[INFO] [stderr]     Checking bytes v0.4.12
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]     Checking net2 v0.2.39
[INFO] [stderr]     Checking lock_api v0.3.4
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rustversion v1.0.15
[INFO] [stderr]    Compiling linux-raw-sys v0.4.13
[INFO] [stderr]     Checking ryu v1.0.17
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]     Checking tokio-io v0.1.13
[INFO] [stderr]     Checking indexmap v2.2.6
[INFO] [stderr]     Checking itoa v1.0.11
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]    Compiling bitflags v2.5.0
[INFO] [stderr]     Checking mio v0.6.23
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling openssl-src v300.2.3+3.2.1
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]     Checking tokio-sync v0.1.8
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling bindgen v0.64.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling phf_generator v0.11.2
[INFO] [stderr]    Compiling bindgen v0.65.1
[INFO] [stderr]     Checking adler v1.0.2
[INFO] [stderr]    Compiling serde_json v1.0.115
[INFO] [stderr]    Compiling phf_codegen v0.11.2
[INFO] [stderr]     Checking miniz_oxide v0.7.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking crossbeam-deque v0.7.4
[INFO] [stderr]     Checking tokio-reactor v0.1.12
[INFO] [stderr]     Checking crossbeam-deque v0.8.5
[INFO] [stderr]     Checking http v0.1.21
[INFO] [stderr]     Checking form_urlencoded v1.2.1
[INFO] [stderr]     Checking time v0.1.45
[INFO] [stderr]    Compiling openssl-sys v0.9.102
[INFO] [stderr]    Compiling libz-sys v1.1.16
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling zstd-sys v2.0.10+zstd.1.5.6
[INFO] [stderr]    Compiling backtrace v0.3.71
[INFO] [stderr]    Compiling curl-sys v0.4.72+curl-8.6.0
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.5
[INFO] [stderr]    Compiling phf v0.11.2
[INFO] [stderr]     Checking idna v0.1.5
[INFO] [stderr]     Checking idna v0.5.0
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr]     Checking crossbeam-queue v0.2.3
[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]     Checking iana-time-zone v0.1.60
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]     Checking unicode-width v0.1.11
[INFO] [stderr]    Compiling unicode-segmentation v1.11.0
[INFO] [stderr]     Checking gimli v0.28.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling unicode-xid v0.2.4
[INFO] [stderr]    Compiling openssl v0.10.64
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.0
[INFO] [stderr]     Checking percent-encoding v1.0.1
[INFO] [stderr]    Compiling ucd-trie v0.1.6
[INFO] [stderr]    Compiling httparse v1.8.0
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling chrono-tz-build v0.2.1
[INFO] [stderr]     Checking url v1.7.2
[INFO] [stderr]    Compiling synstructure v0.12.6
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking chrono v0.4.37
[INFO] [stderr]     Checking url v2.5.0
[INFO] [stderr]     Checking tokio-threadpool v0.1.18
[INFO] [stderr]     Checking tokio-tcp v0.1.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking string v0.2.1
[INFO] [stderr]     Checking tokio-buf v0.1.1
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking tokio-current-thread v0.1.7
[INFO] [stderr]     Checking tokio-timer v0.2.13
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling hyper v0.12.36
[INFO] [stderr]     Checking bstr v1.9.1
[INFO] [stderr]     Checking object v0.32.2
[INFO] [stderr]    Compiling lock_api v0.4.11
[INFO] [stderr]     Checking rustc-demangle v0.1.23
[INFO] [stderr]    Compiling crc32fast v1.4.0
[INFO] [stderr]     Checking unic-char-range v0.9.0
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]     Checking addr2line v0.21.0
[INFO] [stderr]    Compiling parking_lot_core v0.9.9
[INFO] [stderr]    Compiling serde_derive v1.0.197
[INFO] [stderr]    Compiling thiserror-impl v1.0.58
[INFO] [stderr]    Compiling openssl-macros v0.1.1
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]     Checking unic-common v0.9.0
[INFO] [stderr]    Compiling native-tls v0.2.11
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking unic-ucd-version v0.9.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking globset v0.4.14
[INFO] [stderr]     Checking want v0.2.0
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]     Checking unic-char-property v0.9.0
[INFO] [stderr]     Checking tokio v0.1.22
[INFO] [stderr]     Checking http-body v0.1.0
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]    Compiling mime_guess v2.0.4
[INFO] [stderr]     Checking h2 v0.1.26
[INFO] [stderr]    Compiling chrono-tz v0.8.6
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking futures-cpupool v0.1.8
[INFO] [stderr]     Checking rand_hc v0.1.0
[INFO] [stderr]     Checking rand_isaac v0.1.1
[INFO] [stderr]     Checking rand_xorshift v0.1.1
[INFO] [stderr]     Checking rand_os v0.1.3
[INFO] [stderr]     Checking idna v0.2.3
[INFO] [stderr]     Checking rand_jitter v0.1.4
[INFO] [stderr]    Compiling GSL-sys v3.0.0
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]    Compiling pest v2.7.9
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking publicsuffix v1.5.6
[INFO] [stderr]     Checking ignore v0.4.22
[INFO] [stderr]     Checking unic-ucd-segment v0.9.0
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]     Checking cookie v0.12.0
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking try_from v0.3.2
[INFO] [stderr]     Checking dtoa v0.4.8
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking deunicode v1.4.3
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking mime v0.3.17
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking void v1.0.2
[INFO] [stderr]     Checking ansi_term v0.12.1
[INFO] [stderr]     Checking yaml-rust v0.3.5
[INFO] [stderr]     Checking unreachable v1.0.0
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking slug v0.1.5
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr] error: could not compile `bindgen` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/31561a63598a0f21fc74c024747ef1310fdd2eb2/bin/rustc --crate-name bindgen --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/bindgen-0.65.1/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="log"' --cfg 'feature="logging"' --cfg 'feature="runtime"' --cfg 'feature="which"' --cfg 'feature="which-rustfmt"' --check-cfg 'cfg(docsrs)' --check-cfg 'cfg(feature, values("__cli", "annotate-snippets", "default", "experimental", "log", "logging", "runtime", "static", "testing_only_extra_assertions", "testing_only_libclang_5", "testing_only_libclang_9", "which", "which-rustfmt"))' -C metadata=fae8b412ecd4ad8c -C extra-filename=-fae8b412ecd4ad8c --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern bitflags=/opt/rustwide/target/debug/deps/libbitflags-6661d73a29bf1c78.rmeta --extern cexpr=/opt/rustwide/target/debug/deps/libcexpr-5047f22a6a84979b.rmeta --extern clang_sys=/opt/rustwide/target/debug/deps/libclang_sys-9a00caba72b01d36.rmeta --extern lazy_static=/opt/rustwide/target/debug/deps/liblazy_static-8b2339b61f5e2c85.rmeta --extern lazycell=/opt/rustwide/target/debug/deps/liblazycell-470586395cc53f3d.rmeta --extern log=/opt/rustwide/target/debug/deps/liblog-2488904322e7e0f7.rmeta --extern peeking_take_while=/opt/rustwide/target/debug/deps/libpeeking_take_while-ef640934592d134a.rmeta --extern prettyplease=/opt/rustwide/target/debug/deps/libprettyplease-86ff4995cbe1b4df.rmeta --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-c0a7e744780d4271.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-5686e102c4253cee.rmeta --extern regex=/opt/rustwide/target/debug/deps/libregex-15935dcec6dccba2.rmeta --extern rustc_hash=/opt/rustwide/target/debug/deps/librustc_hash-27694c26883e36a3.rmeta --extern shlex=/opt/rustwide/target/debug/deps/libshlex-f4c3659040844f7b.rmeta --extern syn=/opt/rustwide/target/debug/deps/libsyn-f975d3810ee5049d.rmeta --extern which=/opt/rustwide/target/debug/deps/libwhich-0d1ed16e493dd4e3.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "62b08ff92d87560fe696dcf2e721688edf96c17bc073a4a6076c53022850a8d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "62b08ff92d87560fe696dcf2e721688edf96c17bc073a4a6076c53022850a8d7", kill_on_drop: false }`
[INFO] [stdout] 62b08ff92d87560fe696dcf2e721688edf96c17bc073a4a6076c53022850a8d7
