[INFO] fetching crate chemfiles-sys 0.10.41...
[INFO] checking chemfiles-sys-0.10.41 against try#31561a63598a0f21fc74c024747ef1310fdd2eb2 for pr-133536
[INFO] extracting crate chemfiles-sys 0.10.41 into /workspace/builds/worker-3-tc2/source
[INFO] validating manifest of crates.io crate chemfiles-sys 0.10.41 on toolchain 31561a63598a0f21fc74c024747ef1310fdd2eb2
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+31561a63598a0f21fc74c024747ef1310fdd2eb2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate chemfiles-sys 0.10.41
[INFO] finished tweaking crates.io crate chemfiles-sys 0.10.41
[INFO] tweaked toml for crates.io crate chemfiles-sys 0.10.41 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+31561a63598a0f21fc74c024747ef1310fdd2eb2" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 3 packages to latest compatible versions
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+31561a63598a0f21fc74c024747ef1310fdd2eb2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+31561a63598a0f21fc74c024747ef1310fdd2eb2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 443778ea44e6868f5c6c3f7d74ac76cd96fe4a4f00673b39209e314b01c7e921
[INFO] running `Command { std: "docker" "start" "-a" "443778ea44e6868f5c6c3f7d74ac76cd96fe4a4f00673b39209e314b01c7e921", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "443778ea44e6868f5c6c3f7d74ac76cd96fe4a4f00673b39209e314b01c7e921", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "443778ea44e6868f5c6c3f7d74ac76cd96fe4a4f00673b39209e314b01c7e921", kill_on_drop: false }`
[INFO] [stdout] 443778ea44e6868f5c6c3f7d74ac76cd96fe4a4f00673b39209e314b01c7e921
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+31561a63598a0f21fc74c024747ef1310fdd2eb2" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1115b4b13ab4d0bf21d4ed35ebd2892f1e9b13992e812602e749dc6ad7b2d05e
[INFO] running `Command { std: "docker" "start" "-a" "1115b4b13ab4d0bf21d4ed35ebd2892f1e9b13992e812602e749dc6ad7b2d05e", kill_on_drop: false }`
[INFO] [stderr]    Compiling cmake v0.1.52
[INFO] [stderr]    Compiling chemfiles-sys v0.10.41 (/opt/rustwide/workdir)
[INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.41 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-bf8641ac42479d32/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE = None
[INFO] [stderr]   CMAKE = None
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-c34f68917aebcfc0/out/build" && CMAKE_PREFIX_PATH="" LC_ALL="C" "cmake" "/opt/rustwide/workdir/." "-DCHEMFILES_VERSION=0.10.4" "-DCHFL_RUST_PREBUILT_TARGET=x86_64-linux-gnu" "-DCHFL_RUST_PREBUILT_SHA256=2ac97eba5b79f8051cd86184e00379271c72e85d2bbcbcd50626b0ec602a1978" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-c34f68917aebcfc0/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   -- The CXX compiler identification is GNU 11.4.0
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ - skipped
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- trying to download https://github.com/chemfiles/chemfiles-prebuilt/releases/download/v0.10.4/chemfiles-static.v0.10.4.x86_64-linux-gnu.tar.gz
[INFO] [stderr]   -- failed to download prebuilt chemfiles, building from sources
[INFO] [stderr]   -- The C compiler identification is GNU 11.4.0
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc - skipped
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Unpacking zlib sources
[INFO] [stderr]   -- Unpacking lzma sources
[INFO] [stderr]   -- Unpacking bzip2 sources
[INFO] [stderr]   -- Unpacking fmt sources
[INFO] [stderr]   -- Unpacking toml11 sources
[INFO] [stderr]   -- Unpacking tng sources
[INFO] [stderr]   -- Unpacking molfiles sources
[INFO] [stderr]   -- Unpacking mmtf-cpp sources
[INFO] [stderr]   -- Unpacking pugixml sources
[INFO] [stderr]   -- Unpacking gemmi sources
[INFO] [stderr]   -- Configuring done
[INFO] [stderr]   -- Generating done
[INFO] [stderr]   -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-c34f68917aebcfc0/out/build
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-c34f68917aebcfc0/out/build" && LC_ALL="C" MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "cmake" "--build" "/opt/rustwide/target/debug/build/chemfiles-sys-c34f68917aebcfc0/out/build" "--target" "install" "--config" "Debug"
[INFO] [stderr]   [  1%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o
[INFO] [stderr]   [  2%] Building CXX object chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o
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[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning (dev) at chemfiles/CMakeLists.txt:35 (option):
[INFO] [stderr]     Policy CMP0077 is not set: option() honors normal variables.  Run "cmake
[INFO] [stderr]     --help-policy CMP0077" for policy details.  Use the cmake_policy command to
[INFO] [stderr]     set the policy and suppress this warning.
[INFO] [stderr] 
[INFO] [stderr]     For compatibility with older versions of CMake, option is clearing the
[INFO] [stderr]     normal variable 'BUILD_SHARED_LIBS'.
[INFO] [stderr]   This warning is for project developers.  Use -Wno-dev to suppress it.
[INFO] [stderr] 
[INFO] [stderr]   CMake Warning:
[INFO] [stderr]     Manually-specified variables were not used by the project:
[INFO] [stderr] 
[INFO] [stderr]       CMAKE_ASM_COMPILER
[INFO] [stderr]       CMAKE_ASM_FLAGS
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:146: chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 1
[INFO] [stderr]   gmake[2]: *** Waiting for unfinished jobs....
[INFO] [stderr]   gmake[1]: *** [CMakeFiles/Makefile2:214: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2
[INFO] [stderr]   gmake: *** [Makefile:136: all] Error 2
[INFO] [stderr]   thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.52/src/lib.rs:1115:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 2
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5b318f5528ba - std::backtrace_rs::backtrace::libunwind::trace::h49438d59a450c8cd
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5
[INFO] [stderr]      1:     0x5b318f5528ba - std::backtrace_rs::backtrace::trace_unsynchronized::h00f8204a39c7607d
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x5b318f5528ba - std::sys::backtrace::_print_fmt::hfb4570bcf6575231
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x5b318f5528ba - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::haa24b3ebc15b8405
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x5b318f5762a3 - core::fmt::rt::Argument::fmt::h640632ca911b1954
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/core/src/fmt/rt.rs:177:76
[INFO] [stderr]      5:     0x5b318f5762a3 - core::fmt::write::hd87dd4a80fd6ed54
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/core/src/fmt/mod.rs:1189:21
[INFO] [stderr]      6:     0x5b318f54f283 - std::io::Write::write_fmt::h63c69be3cb79728d
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/io/mod.rs:1887:15
[INFO] [stderr]      7:     0x5b318f552702 - std::sys::backtrace::BacktraceLock::print::h0cabd5ee17b200b1
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      8:     0x5b318f5538fc - std::panicking::default_hook::{{closure}}::hfecf31e00fd6a324
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/panicking.rs:268:22
[INFO] [stderr]      9:     0x5b318f553742 - std::panicking::default_hook::h4b1c6fd76f5e43f2
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/panicking.rs:295:9
[INFO] [stderr]     10:     0x5b318f553ef7 - std::panicking::rust_panic_with_hook::h43e69ada3ffc0134
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/panicking.rs:801:13
[INFO] [stderr]     11:     0x5b318f553d8a - std::panicking::begin_panic_handler::{{closure}}::h541e54997b7f9317
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/panicking.rs:674:13
[INFO] [stderr]     12:     0x5b318f552d99 - std::sys::backtrace::__rust_end_short_backtrace::h77e9f2cf7d6f5724
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/sys/backtrace.rs:170:18
[INFO] [stderr]     13:     0x5b318f553a1c - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/panicking.rs:665:5
[INFO] [stderr]     14:     0x5b318f575050 - core::panicking::panic_fmt::h8656b4a1ebe7eef6
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/core/src/panicking.rs:76:14
[INFO] [stderr]     15:     0x5b318f4c5392 - cmake::fail::h4d6f7582583bd7d0
[INFO] [stderr]     16:     0x5b318f4c4b2d - cmake::run::he89b94d0aa669ff6
[INFO] [stderr]     17:     0x5b318f4c1403 - cmake::Config::build::h987b2cf1bfd1aad1
[INFO] [stderr]     18:     0x5b318f4bb8a6 - build_script_build::build_chemfiles::heaa2f8a2ba152840
[INFO] [stderr]     19:     0x5b318f4bad43 - build_script_build::main::h5f61c2cf13d205a7
[INFO] [stderr]     20:     0x5b318f4b9123 - core::ops::function::FnOnce::call_once::hb2a2a1ebccb4d7b9
[INFO] [stderr]     21:     0x5b318f4b9006 - std::sys::backtrace::__rust_begin_short_backtrace::h134fab00007e7fa3
[INFO] [stderr]     22:     0x5b318f4b8f69 - std::rt::lang_start::{{closure}}::h3236ea628217727f
[INFO] [stderr]     23:     0x5b318f54b4b7 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h5de4a2bf18b34b48
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/core/src/ops/function.rs:284:13
[INFO] [stderr]     24:     0x5b318f54b4b7 - std::panicking::try::do_call::h18e58ebf513e1dfb
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/panicking.rs:557:40
[INFO] [stderr]     25:     0x5b318f54b4b7 - std::panicking::try::hd66d4cce67b2d3a6
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/panicking.rs:520:19
[INFO] [stderr]     26:     0x5b318f54b4b7 - std::panic::catch_unwind::h7d20459bfb46fa18
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/panic.rs:358:14
[INFO] [stderr]     27:     0x5b318f54b4b7 - std::rt::lang_start_internal::{{closure}}::h08530640535ea25a
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/rt.rs:174:48
[INFO] [stderr]     28:     0x5b318f54b4b7 - std::panicking::try::do_call::hef1d5032756af4de
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/panicking.rs:557:40
[INFO] [stderr]     29:     0x5b318f54b4b7 - std::panicking::try::h72abeda96f937582
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/panicking.rs:520:19
[INFO] [stderr]     30:     0x5b318f54b4b7 - std::panic::catch_unwind::hff9195ddaed64075
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/panic.rs:358:14
[INFO] [stderr]     31:     0x5b318f54b4b7 - std::rt::lang_start_internal::h506b703bddcb88cd
[INFO] [stderr]                                  at /rustc/31561a63598a0f21fc74c024747ef1310fdd2eb2/library/std/src/rt.rs:174:20
[INFO] [stderr]     32:     0x5b318f4b8f47 - std::rt::lang_start::hd3d9ce802178e03d
[INFO] [stderr]     33:     0x5b318f4bc395 - main
[INFO] [stderr]     34:     0x7787ec96bd90 - <unknown>
[INFO] [stderr]     35:     0x7787ec96be40 - __libc_start_main
[INFO] [stderr]     36:     0x5b318f4b8d75 - _start
[INFO] [stderr]     37:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "1115b4b13ab4d0bf21d4ed35ebd2892f1e9b13992e812602e749dc6ad7b2d05e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1115b4b13ab4d0bf21d4ed35ebd2892f1e9b13992e812602e749dc6ad7b2d05e", kill_on_drop: false }`
[INFO] [stdout] 1115b4b13ab4d0bf21d4ed35ebd2892f1e9b13992e812602e749dc6ad7b2d05e
