[INFO] fetching crate minimap2 0.1.23+minimap2.2.28... [INFO] checking minimap2-0.1.23+minimap2.2.28 against master#dc8fe1f81c6cf13c0987944c525b2aa81625b5d0 for pr-133502-4 [INFO] extracting crate minimap2 0.1.23+minimap2.2.28 into /workspace/builds/worker-0-tc1/source [INFO] validating manifest of crates.io crate minimap2 0.1.23+minimap2.2.28 on toolchain dc8fe1f81c6cf13c0987944c525b2aa81625b5d0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dc8fe1f81c6cf13c0987944c525b2aa81625b5d0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate minimap2 0.1.23+minimap2.2.28 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate minimap2 0.1.23+minimap2.2.28 [INFO] tweaked toml for crates.io crate minimap2 0.1.23+minimap2.2.28 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] crate crates.io crate minimap2 0.1.23+minimap2.2.28 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dc8fe1f81c6cf13c0987944c525b2aa81625b5d0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: version requirement `0.1.21+minimap2.2.28` for dependency `minimap2-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded cmake v0.1.52 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded anstyle-wincon v3.0.6 [INFO] [stderr] Downloaded clap_derive v4.5.18 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded buffer-redux v1.0.2 [INFO] [stderr] Downloaded lazycell v1.3.0 [INFO] [stderr] Downloaded rust-htslib v0.49.0 [INFO] [stderr] Downloaded crossbeam-channel v0.5.14 [INFO] [stderr] Downloaded crossbeam-queue v0.3.12 [INFO] [stderr] Downloaded crossbeam v0.8.4 [INFO] [stderr] Downloaded bindgen v0.69.5 [INFO] [stderr] Downloaded bytecount v0.6.8 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded derive-new v0.7.0 [INFO] [stderr] Downloaded openssl-sys v0.9.104 [INFO] [stderr] Downloaded minimap2-sys v0.1.21+minimap2.2.28 [INFO] [stderr] Downloaded needletail v0.6.1 [INFO] [stderr] Downloaded libz-sys v1.1.20 [INFO] [stderr] Downloaded curl-sys v0.4.78+curl-8.11.0 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] [stderr] Downloaded openssl-src v300.4.1+3.4.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+dc8fe1f81c6cf13c0987944c525b2aa81625b5d0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e52612e21f7176c8987552f958352223ee77a5ce8413c5be27c4229f85f39620 [INFO] running `Command { std: "docker" "start" "-a" "e52612e21f7176c8987552f958352223ee77a5ce8413c5be27c4229f85f39620", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e52612e21f7176c8987552f958352223ee77a5ce8413c5be27c4229f85f39620", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e52612e21f7176c8987552f958352223ee77a5ce8413c5be27c4229f85f39620", kill_on_drop: false }` [INFO] [stdout] e52612e21f7176c8987552f958352223ee77a5ce8413c5be27c4229f85f39620 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+dc8fe1f81c6cf13c0987944c525b2aa81625b5d0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] dec20cfe235b6de5158271ab1ed5ed96c96f489287229b27ca8a92d7c937b8c8 [INFO] running `Command { std: "docker" "start" "-a" "dec20cfe235b6de5158271ab1ed5ed96c96f489287229b27ca8a92d7c937b8c8", kill_on_drop: false }` [INFO] [stderr] warning: version requirement `0.1.21+minimap2.2.28` for dependency `minimap2-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] [stderr] Compiling cc v1.2.7 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling proc-macro2 v1.0.92 [INFO] [stderr] Compiling unicode-ident v1.0.14 [INFO] [stderr] Compiling libc v0.2.169 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Checking buffer-redux v1.0.2 [INFO] [stderr] Checking anstream v0.6.18 [INFO] [stderr] Checking clap_lex v0.7.4 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking needletail v0.6.1 [INFO] [stderr] Checking crossbeam-channel v0.5.14 [INFO] [stderr] Checking clap_builder v4.5.23 [INFO] [stderr] Checking crossbeam-queue v0.3.12 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Checking crossbeam v0.8.4 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Compiling syn v2.0.94 [INFO] [stderr] Compiling libz-sys v1.1.20 [INFO] [stderr] Compiling minimap2-sys v0.1.21+minimap2.2.28 [INFO] [stderr] Compiling clap_derive v4.5.18 [INFO] [stderr] Checking clap v4.5.23 [INFO] [stderr] Checking minimap2 v0.1.23+minimap2.2.28 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `km` [INFO] [stdout] --> src/lib.rs:997:17 [INFO] [stdout] | [INFO] [stdout] 997 | let km: *mut c_void = unsafe { mm_tbuf_get_km(buf.get_buf()) }; [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_km` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `state` is never read [INFO] [stdout] --> src/lib.rs:320:5 [INFO] [stdout] | [INFO] [stdout] 300 | pub struct Aligner { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 320 | state: S, [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Aligner` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `km` [INFO] [stdout] --> src/lib.rs:997:17 [INFO] [stdout] | [INFO] [stdout] 997 | let km: *mut c_void = unsafe { mm_tbuf_get_km(buf.get_buf()) }; [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_km` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `FastxReader` [INFO] [stdout] --> examples/rayon.rs:2:36 [INFO] [stdout] | [INFO] [stdout] 2 | use needletail::{parse_fastx_file, FastxReader}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aligner` [INFO] [stdout] --> src/lib.rs:2274:17 [INFO] [stdout] | [INFO] [stdout] 2274 | let aligner = aligner [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_aligner` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `state` is never read [INFO] [stdout] --> src/lib.rs:320:5 [INFO] [stdout] | [INFO] [stdout] 300 | pub struct Aligner { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 320 | state: S, [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Aligner` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `record` [INFO] [stdout] --> examples/channels.rs:129:37 [INFO] [stdout] | [INFO] [stdout] 129 | Some(WorkQueue::Result((record, alignments))) => { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_record` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 15.25s [INFO] running `Command { std: "docker" "inspect" "dec20cfe235b6de5158271ab1ed5ed96c96f489287229b27ca8a92d7c937b8c8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dec20cfe235b6de5158271ab1ed5ed96c96f489287229b27ca8a92d7c937b8c8", kill_on_drop: false }` [INFO] [stdout] dec20cfe235b6de5158271ab1ed5ed96c96f489287229b27ca8a92d7c937b8c8