[INFO] fetching crate bio 2.2.0... [INFO] checking bio-2.2.0 against master#dc8fe1f81c6cf13c0987944c525b2aa81625b5d0 for pr-133502-4 [INFO] extracting crate bio 2.2.0 into /workspace/builds/worker-1-tc1/source [INFO] validating manifest of crates.io crate bio 2.2.0 on toolchain dc8fe1f81c6cf13c0987944c525b2aa81625b5d0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dc8fe1f81c6cf13c0987944c525b2aa81625b5d0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate bio 2.2.0 [INFO] finished tweaking crates.io crate bio 2.2.0 [INFO] tweaked toml for crates.io crate bio 2.2.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] crate crates.io crate bio 2.2.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dc8fe1f81c6cf13c0987944c525b2aa81625b5d0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded multimap v0.10.0 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded zerocopy-derive v0.8.20 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded statrs v0.18.0 [INFO] [stderr] Downloaded zerocopy v0.8.20 [INFO] [stderr] Downloaded enum-map-derive v0.17.0 [INFO] [stderr] Downloaded enum-map v2.7.3 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded ordered-float v5.0.0 [INFO] [stderr] Downloaded rand_core v0.9.2 [INFO] [stderr] Downloaded petgraph v0.7.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+dc8fe1f81c6cf13c0987944c525b2aa81625b5d0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 684043cd832302f83d8a0fc5b70c8f6feaaed1abbdabef3ce30148c739ab30ef [INFO] running `Command { std: "docker" "start" "-a" "684043cd832302f83d8a0fc5b70c8f6feaaed1abbdabef3ce30148c739ab30ef", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "684043cd832302f83d8a0fc5b70c8f6feaaed1abbdabef3ce30148c739ab30ef", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "684043cd832302f83d8a0fc5b70c8f6feaaed1abbdabef3ce30148c739ab30ef", kill_on_drop: false }` [INFO] [stdout] 684043cd832302f83d8a0fc5b70c8f6feaaed1abbdabef3ce30148c739ab30ef [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+dc8fe1f81c6cf13c0987944c525b2aa81625b5d0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6a0b592c223037329080f05b8eefe5f47f2f24d13513ca784e4bf832468c6422 [INFO] running `Command { std: "docker" "start" "-a" "6a0b592c223037329080f05b8eefe5f47f2f24d13513ca784e4bf832468c6422", kill_on_drop: false }` [INFO] [stderr] Compiling syn v2.0.98 [INFO] [stderr] Compiling libc v0.2.170 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling getrandom v0.3.1 [INFO] [stderr] Compiling serde v1.0.218 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Checking bytemuck v1.21.0 [INFO] [stderr] Compiling zerocopy v0.8.20 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Compiling rustix v0.38.44 [INFO] [stderr] Compiling rustversion v1.0.19 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking bitflags v2.8.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking wide v0.7.32 [INFO] [stderr] Checking linux-raw-sys v0.4.15 [INFO] [stderr] Checking num-traits v0.2.19 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Compiling anyhow v1.0.96 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking once_cell v1.20.3 [INFO] [stderr] Compiling thiserror v2.0.11 [INFO] [stderr] Checking indexmap v2.7.1 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking csv-core v0.1.12 [INFO] [stderr] Checking itoa v1.0.14 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking either v1.14.0 [INFO] [stderr] Checking ryu v1.0.19 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking petgraph v0.7.1 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking simba v0.9.0 [INFO] [stderr] Checking wait-timeout v0.2.1 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking rand_core v0.9.2 [INFO] [stderr] Checking tempfile v3.17.1 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking rand_xorshift v0.3.0 [INFO] [stderr] Checking ordered-float v5.0.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking rusty-fork v0.3.0 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking unarray v0.1.4 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.218 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling thiserror-impl v2.0.11 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking ppv-lite86 v0.2.20 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking rand v0.9.0 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking proptest v1.6.0 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Checking multimap v0.10.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking csv v1.3.1 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking bio v2.2.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition name: `tests` [INFO] [stdout] --> src/data_structures/smallints.rs:198:7 [INFO] [stdout] | [INFO] [stdout] 198 | #[cfg(tests)] [INFO] [stdout] | ^^^^^ help: there is a config with a similar name: `test` [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tests)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tests)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: elided lifetime has a name [INFO] [stdout] --> src/pattern_matching/bndm.rs:52:67 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] | -- lifetime `'a` declared here ^^ this elided lifetime gets resolved as `'a` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(elided_named_lifetimes)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: elided lifetime has a name [INFO] [stdout] --> src/pattern_matching/bom.rs:97:67 [INFO] [stdout] | [INFO] [stdout] 97 | pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] | -- lifetime `'a` declared here ^^ this elided lifetime gets resolved as `'a` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: elided lifetime has a name [INFO] [stdout] --> src/pattern_matching/horspool.rs:67:67 [INFO] [stdout] | [INFO] [stdout] 67 | pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'_> { [INFO] [stdout] | -- lifetime `'b` declared here ^^ this elided lifetime gets resolved as `'b` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/builder.rs:134:11 [INFO] [stdout] | [INFO] [stdout] 134 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: expected names are: `docsrs`, `feature`, and `test` and 31 more [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/builder.rs:182:11 [INFO] [stdout] | [INFO] [stdout] 182 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/helpers.rs:75:7 [INFO] [stdout] | [INFO] [stdout] 75 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: elided lifetime has a name [INFO] [stdout] --> src/pattern_matching/ukkonen.rs:70:18 [INFO] [stdout] | [INFO] [stdout] 65 | pub fn find_all_end<'a, C, T>( [INFO] [stdout] | -- lifetime `'a` declared here [INFO] [stdout] ... [INFO] [stdout] 70 | ) -> Matches<'_, F, C, T::IntoIter> [INFO] [stdout] | ^^ this elided lifetime gets resolved as `'a` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `EnumVariantNames`: please use `#[derive(VariantNames)]` instead [INFO] [stdout] --> src/stats/bayesian/bayes_factors.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 20 | EnumVariantNames, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `nightly` [INFO] [stdout] --> src/data_structures/qgram_index.rs:411:11 [INFO] [stdout] | [INFO] [stdout] 411 | #[cfg(feature = "nightly")] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `generic-simd`, `pest`, `pest_derive`, `phylogeny`, and `runtime-dispatch-simd` [INFO] [stdout] = help: consider adding `nightly` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `tests` [INFO] [stdout] --> src/data_structures/smallints.rs:198:7 [INFO] [stdout] | [INFO] [stdout] 198 | #[cfg(tests)] [INFO] [stdout] | ^^^^^ help: there is a config with a similar name: `test` [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tests)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tests)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: elided lifetime has a name [INFO] [stdout] --> src/pattern_matching/bndm.rs:52:67 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] | -- lifetime `'a` declared here ^^ this elided lifetime gets resolved as `'a` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(elided_named_lifetimes)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: elided lifetime has a name [INFO] [stdout] --> src/pattern_matching/bom.rs:97:67 [INFO] [stdout] | [INFO] [stdout] 97 | pub fn find_all<'a>(&'a self, text: TextSlice<'a>) -> Matches<'_> { [INFO] [stdout] | -- lifetime `'a` declared here ^^ this elided lifetime gets resolved as `'a` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: elided lifetime has a name [INFO] [stdout] --> src/pattern_matching/horspool.rs:67:67 [INFO] [stdout] | [INFO] [stdout] 67 | pub fn find_all<'b>(&'b self, text: TextSlice<'b>) -> Matches<'_> { [INFO] [stdout] | -- lifetime `'b` declared here ^^ this elided lifetime gets resolved as `'b` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/builder.rs:134:11 [INFO] [stdout] | [INFO] [stdout] 134 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: expected names are: `docsrs`, `feature`, and `test` and 31 more [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/builder.rs:182:11 [INFO] [stdout] | [INFO] [stdout] 182 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_u128` [INFO] [stdout] --> src/pattern_matching/myers/helpers.rs:75:7 [INFO] [stdout] | [INFO] [stdout] 75 | #[cfg(has_u128)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(has_u128)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(has_u128)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: elided lifetime has a name [INFO] [stdout] --> src/pattern_matching/ukkonen.rs:70:18 [INFO] [stdout] | [INFO] [stdout] 65 | pub fn find_all_end<'a, C, T>( [INFO] [stdout] | -- lifetime `'a` declared here [INFO] [stdout] ... [INFO] [stdout] 70 | ) -> Matches<'_, F, C, T::IntoIter> [INFO] [stdout] | ^^ this elided lifetime gets resolved as `'a` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `EnumVariantNames`: please use `#[derive(VariantNames)]` instead [INFO] [stdout] --> src/stats/bayesian/bayes_factors.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 20 | EnumVariantNames, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `rand::thread_rng`: renamed to `rng` [INFO] [stdout] --> src/data_structures/suffix_array.rs:851:29 [INFO] [stdout] | [INFO] [stdout] 851 | let mut rng = rand::thread_rng(); [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `rand::Rng::gen_range`: Renamed to `random_range` [INFO] [stdout] --> src/data_structures/suffix_array.rs:855:31 [INFO] [stdout] | [INFO] [stdout] 855 | let len = rng.gen_range((seq_len / 2)..=seq_len); [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `ndarray::impl_methods::>::into_shape`: Use `.into_shape_with_order()` or `.to_shape()` [INFO] [stdout] --> src/pattern_matching/pssm/protmotif.rs:197:10 [INFO] [stdout] | [INFO] [stdout] 197 | .into_shape((4, 20)) [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `block_mut`, `left_block_mut`, and `print_state` are never used [INFO] [stdout] --> src/pattern_matching/myers/traceback.rs:74:8 [INFO] [stdout] | [INFO] [stdout] 65 | pub(super) trait TracebackHandler<'a, T, D> [INFO] [stdout] | ---------------- methods in this trait [INFO] [stdout] ... [INFO] [stdout] 74 | fn block_mut(&mut self) -> &mut State; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 80 | fn left_block_mut(&mut self) -> &mut State; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 149 | fn print_state(&self) { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `block_mut`, `left_block_mut`, and `print_state` are never used [INFO] [stdout] --> src/pattern_matching/myers/traceback.rs:74:8 [INFO] [stdout] | [INFO] [stdout] 65 | pub(super) trait TracebackHandler<'a, T, D> [INFO] [stdout] | ---------------- methods in this trait [INFO] [stdout] ... [INFO] [stdout] 74 | fn block_mut(&mut self) -> &mut State; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 80 | fn left_block_mut(&mut self) -> &mut State; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 149 | fn print_state(&self) { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `test_degenerate_input` is never used [INFO] [stdout] --> src/pattern_matching/pssm/protmotif.rs:243:8 [INFO] [stdout] | [INFO] [stdout] 243 | fn test_degenerate_input() { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 04s [INFO] running `Command { std: "docker" "inspect" "6a0b592c223037329080f05b8eefe5f47f2f24d13513ca784e4bf832468c6422", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6a0b592c223037329080f05b8eefe5f47f2f24d13513ca784e4bf832468c6422", kill_on_drop: false }` [INFO] [stdout] 6a0b592c223037329080f05b8eefe5f47f2f24d13513ca784e4bf832468c6422