[INFO] fetching crate fgumi 0.7.0...
[INFO] checking fgumi-0.7.0 against 3154cc1a3e6424e44f438a95007d043ed5ceaaf6 for pr-133502-30
[INFO] extracting crate fgumi 0.7.0 into /workspace/builds/worker-3-tc2/source
[INFO] removed /workspace/builds/worker-3-tc2/source/.cargo/config.toml
[INFO] removed /workspace/builds/worker-3-tc2/source/rust-toolchain.toml
[INFO] started tweaking crates.io crate fgumi 0.7.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate fgumi 0.7.0
[INFO] tweaked toml for crates.io crate fgumi 0.7.0 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate fgumi 0.7.0 on toolchain 3154cc1a3e6424e44f438a95007d043ed5ceaaf6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3154cc1a3e6424e44f438a95007d043ed5ceaaf6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate fgumi 0.7.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3154cc1a3e6424e44f438a95007d043ed5ceaaf6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:257:12
[INFO] [stderr]     |
[INFO] [stderr] 257 | homepage = "https://github.com/fulcrumgenomics/fgumi"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 262 | repository = "https://github.com/fulcrumgenomics/fgumi"
[INFO] [stderr]     |              ------------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `fgumi` (manifest) generated 1 warning
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 629110bc775b5dc9b46f81cfc028e6c743125a06bc0dc2eb5ff30dbcc468f0bc
[INFO] running `Command { std: "docker" "start" "629110bc775b5dc9b46f81cfc028e6c743125a06bc0dc2eb5ff30dbcc468f0bc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "629110bc775b5dc9b46f81cfc028e6c743125a06bc0dc2eb5ff30dbcc468f0bc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "629110bc775b5dc9b46f81cfc028e6c743125a06bc0dc2eb5ff30dbcc468f0bc" "/opt/rustwide/cargo-home/bin/cargo" "+3154cc1a3e6424e44f438a95007d043ed5ceaaf6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "629110bc775b5dc9b46f81cfc028e6c743125a06bc0dc2eb5ff30dbcc468f0bc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "629110bc775b5dc9b46f81cfc028e6c743125a06bc0dc2eb5ff30dbcc468f0bc" "/opt/rustwide/cargo-home/bin/cargo" "+3154cc1a3e6424e44f438a95007d043ed5ceaaf6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:257:12
[INFO] [stderr]     |
[INFO] [stderr] 257 | homepage = "https://github.com/fulcrumgenomics/fgumi"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 262 | repository = "https://github.com/fulcrumgenomics/fgumi"
[INFO] [stderr]     |              ------------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `fgumi` (manifest) generated 1 warning
[INFO] [stderr]    Compiling libc v0.2.189
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.20
[INFO] [stderr]    Compiling crossbeam-deque v0.8.7
[INFO] [stderr]     Checking zlib-rs v0.6.7
[INFO] [stderr]     Checking regex-automata v0.4.18
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]    Compiling syn v3.0.4
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]     Checking hashbrown v0.17.1
[INFO] [stderr]     Checking crossbeam-channel v0.5.16
[INFO] [stderr]     Checking bit-vec v0.10.1
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]     Checking linux-raw-sys v0.12.1
[INFO] [stderr]     Checking once_cell v1.21.4
[INFO] [stderr]     Checking fgumi-dna v0.7.0
[INFO] [stderr]     Checking clap_lex v1.1.0
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]     Checking clap_builder v4.6.6
[INFO] [stderr]    Compiling nix v0.31.3
[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.11
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking smallvec v1.15.2
[INFO] [stderr]     Checking rayon-core v1.13.0
[INFO] [stderr]     Checking cty v0.2.2
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling aho-corasick v1.1.5
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking jiff-core v0.1.0
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]    Compiling toml_edit v0.25.13+spec-1.1.0
[INFO] [stderr]    Compiling rstest_macros v0.26.1
[INFO] [stderr]     Checking crossbeam-queue v0.3.13
[INFO] [stderr]     Checking ciborium-io v0.2.2
[INFO] [stderr]     Checking strum v0.24.1
[INFO] [stderr]     Checking bytesize v2.7.0
[INFO] [stderr]     Checking plotters-backend v0.3.7
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]    Compiling jobserver v0.1.35
[INFO] [stderr]     Checking plotters-svg v0.3.7
[INFO] [stderr]     Checking lru v0.18.2
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking bstr v1.13.1
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking getrandom v0.4.3
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]    Compiling cc v1.4.4
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking regex v1.13.1
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]     Checking jiff v0.2.35
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking env_filter v2.0.0
[INFO] [stderr]     Checking rand v0.10.2
[INFO] [stderr]    Compiling proc-macro-crate v3.5.0
[INFO] [stderr]     Checking wait-timeout v0.2.1
[INFO] [stderr]     Checking noodles-core v0.20.0
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking sysinfo v0.38.4
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking fgumi-simd-fastq v0.7.0
[INFO] [stderr]     Checking cast v0.3.0
[INFO] [stderr]    Compiling relative-path v1.9.3
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking rand v0.9.5
[INFO] [stderr]     Checking rand_xorshift v0.4.0
[INFO] [stderr]     Checking page_size v0.6.0
[INFO] [stderr]     Checking plotters v0.3.7
[INFO] [stderr]     Checking anes v0.1.6
[INFO] [stderr]     Checking futures-timer v3.0.4
[INFO] [stderr]     Checking unarray v0.1.4
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking fs4 v1.1.0
[INFO] [stderr]     Checking rand_distr v0.6.0
[INFO] [stderr]     Checking oorandom v11.1.5
[INFO] [stderr]    Compiling libdeflate-sys v1.26.0
[INFO] [stderr]    Compiling libz-sys v1.1.29
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling libgit2-sys v0.18.8+1.9.7
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.49
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling alloca v0.4.0
[INFO] [stderr]     Checking rusty-fork v0.3.1
[INFO] [stderr]     Checking criterion-plot v0.8.2
[INFO] [stderr]    Compiling bytemuck_derive v1.12.0
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]    Compiling clap_derive v4.6.4
[INFO] [stderr]    Compiling thiserror-impl v2.0.20
[INFO] [stderr]    Compiling futures-macro v0.3.34
[INFO] [stderr]     Checking env_logger v0.11.11
[INFO] [stderr]    Compiling zerocopy-derive v0.8.56
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling enum_dispatch v0.3.13
[INFO] [stderr]     Checking thiserror v2.0.20
[INFO] [stderr]     Checking futures-util v0.3.34
[INFO] [stderr]     Checking bytemuck v1.25.2
[INFO] [stderr]     Checking safe_arch v1.2.0
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking wide v1.6.1
[INFO] [stderr]     Checking mimalloc v0.1.52
[INFO] [stderr]     Checking clap v4.6.6
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking zerocopy v0.8.56
[INFO] [stderr]     Checking libdeflater v1.26.0
[INFO] [stderr]     Checking noodles-bgzf v0.51.0
[INFO] [stderr]     Checking bgzf v0.5.0
[INFO] [stderr]     Checking serde v1.0.229
[INFO] [stderr]     Checking fgumi-bgzf v0.7.0
[INFO] [stderr]     Checking noodles-csi v0.60.0
[INFO] [stderr]     Checking noodles-fasta v0.66.0
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking noodles-tabix v0.66.0
[INFO] [stderr]     Checking noodles-sam v0.89.0
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking noodles-vcf v0.92.0
[INFO] [stderr]     Checking serde-value v0.7.0
[INFO] [stderr]     Checking tinytemplate v1.2.1
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking serde-aux v4.7.0
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking read-structure v0.2.0
[INFO] [stderr]     Checking fgoxide v0.6.0
[INFO] [stderr]     Checking noodles-bam v0.94.0
[INFO] [stderr]     Checking noodles v0.115.0
[INFO] [stderr]     Checking fgumi-tag v0.7.0
[INFO] [stderr]     Checking rstest v0.26.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking ahash v0.8.12
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking fgumi-umi v0.7.0
[INFO] [stderr]    Compiling git2 v0.21.0
[INFO] [stderr]     Checking ciborium-ll v0.2.2
[INFO] [stderr]     Checking ciborium v0.2.2
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking rand v0.8.7
[INFO] [stderr]     Checking proptest v1.11.0
[INFO] [stderr]     Checking criterion v0.8.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking nalgebra v0.33.3
[INFO] [stderr]     Checking fgumi-raw-bam v0.7.0
[INFO] [stderr]     Checking fgumi-sam v0.7.0
[INFO] [stderr]     Checking fgumi-metrics v0.7.0
[INFO] [stderr]     Checking fgumi-bam-io v0.7.0
[INFO] [stderr]     Checking fgumi-sort v0.7.0
[INFO] [stderr]     Checking fgumi-consensus v0.7.0
[INFO] [stderr]    Compiling built v0.8.1
[INFO] [stderr]    Compiling fgumi v0.7.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]     --> src/lib/commands/dedup.rs:1571:22
[INFO] [stdout]      |
[INFO] [stdout] 1571 |                     .fetch_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout]      |                      ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]      |
[INFO] [stdout] 1571 -                     .fetch_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout] 1571 +                     .try_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]     --> src/lib/commands/group.rs:1355:22
[INFO] [stdout]      |
[INFO] [stdout] 1355 |                     .fetch_update(
[INFO] [stdout]      |                      ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]      |
[INFO] [stdout] 1355 -                     .fetch_update(
[INFO] [stdout] 1355 +                     .try_update(
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]    --> src/lib/unified_pipeline/base.rs:741:10
[INFO] [stdout]     |
[INFO] [stdout] 741 |         .fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |          ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]     |
[INFO] [stdout] 741 -         .fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout] 741 +         .try_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]     --> src/lib/unified_pipeline/base.rs:1001:33
[INFO] [stdout]      |
[INFO] [stdout] 1001 |         let _ = self.heap_bytes.fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]      |                                 ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]      |
[INFO] [stdout] 1001 -         let _ = self.heap_bytes.fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout] 1001 +         let _ = self.heap_bytes.try_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]     --> src/lib/commands/dedup.rs:1571:22
[INFO] [stdout]      |
[INFO] [stdout] 1571 |                     .fetch_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout]      |                      ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]      |
[INFO] [stdout] 1571 -                     .fetch_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout] 1571 +                     .try_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]     --> src/lib/commands/group.rs:1355:22
[INFO] [stdout]      |
[INFO] [stdout] 1355 |                     .fetch_update(
[INFO] [stdout]      |                      ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]      |
[INFO] [stdout] 1355 -                     .fetch_update(
[INFO] [stdout] 1355 +                     .try_update(
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `fgumi_lib::unified_pipeline::run_bam_pipeline_with_grouper`
[INFO] [stdout]   --> tests/integration/test_bam_pipeline.rs:18:48
[INFO] [stdout]    |
[INFO] [stdout] 18 |     BamPipelineConfig, DecodedRecord, Grouper, run_bam_pipeline_with_grouper,
[INFO] [stdout]    |                                                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ no `run_bam_pipeline_with_grouper` in `unified_pipeline`
[INFO] [stdout]    |
[INFO] [stdout] help: a similar name exists in the module
[INFO] [stdout]    |
[INFO] [stdout] 18 -     BamPipelineConfig, DecodedRecord, Grouper, run_bam_pipeline_with_grouper,
[INFO] [stdout] 18 +     BamPipelineConfig, DecodedRecord, Grouper, run_bam_pipeline_from_reader,
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `fgumi_lib::unified_pipeline::run_bam_pipeline_with_grouper`
[INFO] [stdout]   --> tests/integration/test_pipeline_concurrency.rs:37:62
[INFO] [stdout]    |
[INFO] [stdout] 37 |     BamPipelineConfig, DecodedRecord, Grouper, OrderedQueue, run_bam_pipeline_with_grouper,
[INFO] [stdout]    |                                                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ no `run_bam_pipeline_with_grouper` in `unified_pipeline`
[INFO] [stdout]    |
[INFO] [stdout]    = note: unresolved item `crate::test_bam_pipeline::test_pipeline_rejects_a_grouper_still_holding_records::run_bam_pipeline_with_grouper` exists but is inaccessible
[INFO] [stdout] help: a similar name exists in the module
[INFO] [stdout]    |
[INFO] [stdout] 37 -     BamPipelineConfig, DecodedRecord, Grouper, OrderedQueue, run_bam_pipeline_with_grouper,
[INFO] [stdout] 37 +     BamPipelineConfig, DecodedRecord, Grouper, OrderedQueue, run_bam_pipeline_from_reader,
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method call on a diverging inference variable
[INFO] [stdout]    --> tests/integration/test_bam_pipeline.rs:474:13
[INFO] [stdout]     |
[INFO] [stdout] 474 |         err.to_string().contains("grouper (partial group pending"),
[INFO] [stdout]     |             ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: consider providing a type annotation
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]     = note: for more information, see issue #156047 <https://github.com/rust-lang/rust/issues/156047>
[INFO] [stdout]     = note: `#[warn(method_call_on_diverging_infer_var)]` (part of `#[warn(future_incompatible)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]    --> src/lib/unified_pipeline/base.rs:741:10
[INFO] [stdout]     |
[INFO] [stdout] 741 |         .fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |          ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]     |
[INFO] [stdout] 741 -         .fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout] 741 +         .try_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]     --> src/lib/unified_pipeline/base.rs:1001:33
[INFO] [stdout]      |
[INFO] [stdout] 1001 |         let _ = self.heap_bytes.fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]      |                                 ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]      |
[INFO] [stdout] 1001 -         let _ = self.heap_bytes.fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout] 1001 +         let _ = self.heap_bytes.try_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<usize>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]     --> src/lib/unified_pipeline/base.rs:7124:37
[INFO] [stdout]      |
[INFO] [stdout] 7124 |                 self.q6_push_budget.fetch_update(Ordering::SeqCst, Ordering::SeqCst, |x| {
[INFO] [stdout]      |                                     ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]      |
[INFO] [stdout] 7124 -                 self.q6_push_budget.fetch_update(Ordering::SeqCst, Ordering::SeqCst, |x| {
[INFO] [stdout] 7124 +                 self.q6_push_budget.try_update(Ordering::SeqCst, Ordering::SeqCst, |x| {
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0432`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `fgumi` (test "integration") due to 2 previous errors; 2 warnings emitted
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] warning: unused dependency `itertools`
[INFO] [stderr]    --> Cargo.toml:143:15
[INFO] [stderr]     |
[INFO] [stderr] 143 | [dependencies.itertools]
[INFO] [stderr]     |               ^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `itertools`
[INFO] [stderr] warning: `fgumi` (manifest) generated 1 warning
[INFO] running `Command { std: "docker" "inspect" "629110bc775b5dc9b46f81cfc028e6c743125a06bc0dc2eb5ff30dbcc468f0bc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "629110bc775b5dc9b46f81cfc028e6c743125a06bc0dc2eb5ff30dbcc468f0bc", kill_on_drop: false }`
[INFO] [stdout] 629110bc775b5dc9b46f81cfc028e6c743125a06bc0dc2eb5ff30dbcc468f0bc
