[INFO] cloning repository https://github.com/Ahmadsi70/nexus-forge-cyto
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Ahmadsi70/nexus-forge-cyto" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAhmadsi70%2Fnexus-forge-cyto", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAhmadsi70%2Fnexus-forge-cyto'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ceaffb7c6ac2ead0039191b2a7e35ba5c7d1d3c7
[INFO] checking Ahmadsi70/nexus-forge-cyto against 3154cc1a3e6424e44f438a95007d043ed5ceaaf6+rustflags=-Znext-solver=coherence for pr-133502-30
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAhmadsi70%2Fnexus-forge-cyto" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/Ahmadsi70/nexus-forge-cyto
[INFO] finished tweaking git repo https://github.com/Ahmadsi70/nexus-forge-cyto
[INFO] tweaked toml for git repo https://github.com/Ahmadsi70/nexus-forge-cyto written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Ahmadsi70/nexus-forge-cyto on toolchain 3154cc1a3e6424e44f438a95007d043ed5ceaaf6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3154cc1a3e6424e44f438a95007d043ed5ceaaf6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/Ahmadsi70/nexus-forge-cyto already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3154cc1a3e6424e44f438a95007d043ed5ceaaf6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /workspace/builds/worker-5-tc1/source/nexus-forge-cyto/Cargo.toml
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[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /workspace/builds/worker-5-tc1/source/nexus-forge-cyto-ai/Cargo.toml
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[INFO] [stderr]     Updating crates.io index
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "c63327d8f8bf5b2755eeede961041b865f618e0b171b0efd8f9fa730a449a1bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c63327d8f8bf5b2755eeede961041b865f618e0b171b0efd8f9fa730a449a1bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c63327d8f8bf5b2755eeede961041b865f618e0b171b0efd8f9fa730a449a1bf" "/opt/rustwide/cargo-home/bin/cargo" "+3154cc1a3e6424e44f438a95007d043ed5ceaaf6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c63327d8f8bf5b2755eeede961041b865f618e0b171b0efd8f9fa730a449a1bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Znext-solver=coherence" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c63327d8f8bf5b2755eeede961041b865f618e0b171b0efd8f9fa730a449a1bf" "/opt/rustwide/cargo-home/bin/cargo" "+3154cc1a3e6424e44f438a95007d043ed5ceaaf6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/nexus-forge-cyto/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/nexus-forge-cyto-ai/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
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[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking primal-check v0.3.4
[INFO] [stderr]    Compiling nexus-forge-cyto-core v0.2.0 (/opt/rustwide/workdir/nexus-forge-cyto-core)
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking rustfft v6.4.1
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking xattr v1.6.1
[INFO] [stderr]    Compiling pulp v0.22.3
[INFO] [stderr]     Checking filetime v0.2.29
[INFO] [stderr]     Checking zerocopy v0.8.56
[INFO] [stderr]     Checking tracing v0.1.44
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[INFO] [stderr]     Checking clap v4.6.2
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]     Checking pulp-wasm-simd-flag v0.1.1
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[INFO] [stderr]     Checking parking_lot_core v0.9.12
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[INFO] [stderr]     Checking zune-inflate v0.2.54
[INFO] [stderr]     Checking errno v0.3.14
[INFO] [stderr]     Checking gif v0.13.3
[INFO] [stderr]    Compiling prost-derive v0.11.9
[INFO] [stderr]     Checking png v0.17.16
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking nexus-forge-cyto-geometry v0.2.0 (/opt/rustwide/workdir/nexus-forge-cyto-geometry)
[INFO] [stderr]     Checking string-interner v0.14.0
[INFO] [stdout] warning: unused variable: `idx`
[INFO] [stdout]    --> nexus-forge-cyto-core/src/geometric_orchestrator.rs:144:10
[INFO] [stdout]     |
[INFO] [stdout] 144 |     for (idx, ring_vec) in vr.cells.iter().enumerate() {
[INFO] [stdout]     |          ^^^ help: if this is intentional, prefix it with an underscore: `_idx`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking signal-hook-registry v1.4.8
[INFO] [stderr]    Compiling kstring v2.0.0
[INFO] [stderr]     Checking tiff v0.9.1
[INFO] [stderr]     Checking prost v0.11.9
[INFO] [stderr]    Compiling liquid-core v0.26.8
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking qoi v0.4.1
[INFO] [stderr]     Checking mio v1.2.2
[INFO] [stderr]     Checking memmap2 v0.5.10
[INFO] [stderr]     Checking socket2 v0.6.5
[INFO] [stderr]    Compiling nexus-forge-cyto-ai v0.1.0 (/opt/rustwide/workdir/nexus-forge-cyto-ai)
[INFO] [stderr]    Compiling nexus-forge-cyto v0.1.0 (/opt/rustwide/workdir/nexus-forge-cyto)
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking futures-task v0.3.34
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking slab v0.4.12
[INFO] [stderr]     Checking futures-util v0.3.34
[INFO] [stderr]     Checking tract-data v0.20.7
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.7
[INFO] [stderr]    Compiling tokio-macros v2.7.2
[INFO] [stderr]     Checking sync_wrapper v1.0.2
[INFO] [stderr]    Compiling async-trait v0.1.92
[INFO] [stderr]    Compiling liquid-lib v0.26.8
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking tokio v1.53.1
[INFO] [stderr]     Checking spin v0.9.9
[INFO] [stderr]     Checking serde_urlencoded v0.7.1
[INFO] [stderr]     Checking serde_path_to_error v0.1.20
[INFO] [stderr]     Checking matchit v0.7.3
[INFO] [stderr]     Checking exr v1.74.2
[INFO] [stderr]     Checking http-range-header v0.4.2
[INFO] [stderr]     Checking multer v3.1.0
[INFO] [stderr]     Checking axum-core v0.4.5
[INFO] [stdout] error[E0433]: cannot find module or crate `etracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:111:13
[INFO] [stdout]     |
[INFO] [stdout] 111 |             etracing::info!("error: read {}: {e}", input.display());
[INFO] [stdout]     |             ^^^^^^^^ use of unresolved module or unlinked crate `etracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `etracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:118:17
[INFO] [stdout]     |
[INFO] [stdout] 118 |                 etracing::info!("error: create output dir {}: {e}", parent.display());
[INFO] [stdout]     |                 ^^^^^^^^ use of unresolved module or unlinked crate `etracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `tracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:128:13
[INFO] [stdout]     |
[INFO] [stdout] 128 |             tracing::info!("  Input:  {}", input.display());
[INFO] [stdout]     |             ^^^^^^^ use of unresolved module or unlinked crate `tracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `tracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:129:13
[INFO] [stdout]     |
[INFO] [stdout] 129 |             tracing::info!("  Output: {}", output.display());
[INFO] [stdout]     |             ^^^^^^^ use of unresolved module or unlinked crate `tracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `tracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:130:13
[INFO] [stdout]     |
[INFO] [stdout] 130 |             tracing::info!("  Cells:  {}  (Malignant: {mal})", rows.len());
[INFO] [stdout]     |             ^^^^^^^ use of unresolved module or unlinked crate `tracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `etracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:134:13
[INFO] [stdout]     |
[INFO] [stdout] 134 |             etracing::info!("error: {} → {}: {e}", input.display(), output.display());
[INFO] [stdout]     |             ^^^^^^^^ use of unresolved module or unlinked crate `etracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `etracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:153:9
[INFO] [stdout]     |
[INFO] [stdout] 153 |         etracing::info!("error: scanning {}: {e}", input_dir.display());
[INFO] [stdout]     |         ^^^^^^^^ use of unresolved module or unlinked crate `etracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `tracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:159:5
[INFO] [stdout]     |
[INFO] [stdout] 159 |     tracing::info!("Nexus-Forge Cyto Core — batch enrichment");
[INFO] [stdout]     |     ^^^^^^^ use of unresolved module or unlinked crate `tracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `tracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:160:5
[INFO] [stdout]     |
[INFO] [stdout] 160 |     tracing::info!("  Input directory:  {}", input_dir.display());
[INFO] [stdout]     |     ^^^^^^^ use of unresolved module or unlinked crate `tracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `tracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:161:5
[INFO] [stdout]     |
[INFO] [stdout] 161 |     tracing::info!("  Output directory: {}", output_dir.display());
[INFO] [stdout]     |     ^^^^^^^ use of unresolved module or unlinked crate `tracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `tracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:162:5
[INFO] [stdout]     |
[INFO] [stdout] 162 |     tracing::info!("  JSON files found: {total}");
[INFO] [stdout]     |     ^^^^^^^ use of unresolved module or unlinked crate `tracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `tracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:165:9
[INFO] [stdout]     |
[INFO] [stdout] 165 |         tracing::info!("Nothing to process.");
[INFO] [stdout]     |         ^^^^^^^ use of unresolved module or unlinked crate `tracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `etracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:179:17
[INFO] [stdout]     |
[INFO] [stdout] 179 |                 etracing::info!("{msg}");
[INFO] [stdout]     |                 ^^^^^^^^ use of unresolved module or unlinked crate `etracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `tracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:187:5
[INFO] [stdout]     |
[INFO] [stdout] 187 |     tracing::info!("Successfully processed {n_ok} files in {elapsed:.2} seconds.");
[INFO] [stdout]     |     ^^^^^^^ use of unresolved module or unlinked crate `tracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `etracing` in this scope
[INFO] [stdout]    --> nexus-forge-cyto-core/src/bin/nexus-core-cli.rs:189:9
[INFO] [stdout]     |
[INFO] [stdout] 189 |         etracing::info!("{n_fail} file(s) failed (details above).");
[INFO] [stdout]     |         ^^^^^^^^ use of unresolved module or unlinked crate `etracing`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `ClinicalStatus`
[INFO] [stdout]  --> nexus-forge-cyto-core/tests/integration.rs:9:19
[INFO] [stdout]   |
[INFO] [stdout] 9 |     CellFeatures, ClinicalStatus,
[INFO] [stdout]   |                   ^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::path::Path`
[INFO] [stdout]   --> nexus-forge-cyto-core/tests/integration.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::path::Path;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `nexus-forge-cyto-core` (bin "nexus-core-cli" test) due to 15 previous errors
[INFO] [stdout] For more information about this error, try `rustc --explain E0433`.
[INFO] [stdout] 
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "c63327d8f8bf5b2755eeede961041b865f618e0b171b0efd8f9fa730a449a1bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c63327d8f8bf5b2755eeede961041b865f618e0b171b0efd8f9fa730a449a1bf", kill_on_drop: false }`
[INFO] [stdout] c63327d8f8bf5b2755eeede961041b865f618e0b171b0efd8f9fa730a449a1bf
