[INFO] cloning repository https://github.com/fulcrumgenomics/ferro-hgvs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/fulcrumgenomics/ferro-hgvs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fferro-hgvs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fferro-hgvs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9577a5f4322144e626062f6662d66d4969c88a5d [INFO] checking fulcrumgenomics/ferro-hgvs against 3154cc1a3e6424e44f438a95007d043ed5ceaaf6+rustflags=-Znext-solver=coherence for pr-133502-30 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fferro-hgvs" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-5-tc1/source/.cargo/config.toml [INFO] removed /workspace/builds/worker-5-tc1/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/fulcrumgenomics/ferro-hgvs [INFO] removed 0 missing examples [INFO] removed 0 missing tests [INFO] finished tweaking git repo https://github.com/fulcrumgenomics/ferro-hgvs [INFO] tweaked toml for git repo https://github.com/fulcrumgenomics/ferro-hgvs written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/fulcrumgenomics/ferro-hgvs on toolchain 3154cc1a3e6424e44f438a95007d043ed5ceaaf6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3154cc1a3e6424e44f438a95007d043ed5ceaaf6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/fulcrumgenomics/ferro-hgvs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3154cc1a3e6424e44f438a95007d043ed5ceaaf6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded postgres-protocol v0.6.9 [INFO] [stderr] Downloaded superintervals v0.3.1 [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded cc v1.2.50 [INFO] [stderr] Downloaded noodles-fasta v0.39.0 [INFO] [stderr] Downloaded noodles-bgzf v0.30.0 [INFO] [stderr] Downloaded seqrepo v0.10.3 [INFO] [stderr] Downloaded noodles v0.76.0 [INFO] [stderr] Downloaded rend v0.5.3 [INFO] [stderr] Downloaded rkyv_derive v0.8.16 [INFO] [stderr] Downloaded rancor v0.1.1 [INFO] [stderr] Downloaded rkyv v0.8.16 [INFO] [stderr] Downloaded pyo3-macros v0.28.3 [INFO] [stderr] Downloaded pyo3-build-config v0.28.3 [INFO] [stderr] Downloaded pyo3-macros-backend v0.28.3 [INFO] [stderr] Downloaded postgres v0.19.12 [INFO] [stderr] Downloaded noodles-gtf v0.52.0 [INFO] [stderr] Downloaded pyo3-ffi v0.28.3 [INFO] [stderr] Downloaded noodles-tabix v0.49.0 [INFO] [stderr] Downloaded noodles-csi v0.43.0 [INFO] [stderr] Downloaded noodles-core v0.16.0 [INFO] [stderr] Downloaded noodles-bgzf v0.35.0 [INFO] [stderr] Downloaded noodles-gff v0.57.0 [INFO] [stderr] Downloaded noodles-csi v0.56.0 [INFO] [stderr] Downloaded proptest v1.9.0 [INFO] [stderr] Downloaded noodles-vcf v0.73.0 [INFO] [stderr] Downloaded noodles-core v0.20.0 [INFO] [stderr] Downloaded noodles-bgzf v0.47.0 [INFO] [stderr] Downloaded quick_cache v0.6.18 [INFO] [stderr] Downloaded cached v0.59.0 [INFO] [stderr] Downloaded cached_proc_macro v0.27.0 [INFO] [stderr] Downloaded hgvs v0.22.0 [INFO] [stderr] Downloaded biocommons-bioutils v0.2.0 [INFO] [stderr] Downloaded pyo3 v0.28.3 [INFO] [stderr] Downloaded clap v4.5.53 [INFO] [stderr] Downloaded clap_builder v4.5.53 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 0ea9584c024108be5da9ce05e482a910faefb6f4001f5dcdf0174160027d7bdd [INFO] running `Command { std: "docker" "start" "0ea9584c024108be5da9ce05e482a910faefb6f4001f5dcdf0174160027d7bdd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0ea9584c024108be5da9ce05e482a910faefb6f4001f5dcdf0174160027d7bdd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "0ea9584c024108be5da9ce05e482a910faefb6f4001f5dcdf0174160027d7bdd" "/opt/rustwide/cargo-home/bin/cargo" "+3154cc1a3e6424e44f438a95007d043ed5ceaaf6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0ea9584c024108be5da9ce05e482a910faefb6f4001f5dcdf0174160027d7bdd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Znext-solver=coherence" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "0ea9584c024108be5da9ce05e482a910faefb6f4001f5dcdf0174160027d7bdd" "/opt/rustwide/cargo-home/bin/cargo" "+3154cc1a3e6424e44f438a95007d043ed5ceaaf6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.178 [INFO] [stderr] Checking indexmap v2.12.1 [INFO] [stderr] Checking simd-adler32 v0.3.8 [INFO] [stderr] Compiling cc v1.2.50 [INFO] [stderr] Checking futures-io v0.3.31 [INFO] [stderr] Checking http v1.4.0 [INFO] [stderr] Checking bstr v1.12.1 [INFO] [stderr] Compiling syn v2.0.111 [INFO] [stderr] Checking smallvec v1.15.1 [INFO] [stderr] Checking lexical-util v1.0.7 [INFO] [stderr] Compiling icu_properties_data v2.1.2 [INFO] [stderr] Compiling zerocopy v0.8.31 [INFO] [stderr] Checking rustls-pki-types v1.13.2 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking tracing-core v0.1.36 [INFO] [stderr] Compiling serde_json v1.0.145 [INFO] [stderr] Compiling rustls v0.23.35 [INFO] [stderr] Checking anstyle-parse v0.2.7 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Checking colorchoice v1.0.4 [INFO] [stderr] Checking compression-core v0.4.31 [INFO] [stderr] Checking regex-syntax v0.8.8 [INFO] [stderr] Checking anstyle v1.0.13 [INFO] [stderr] Checking zlib-rs v0.6.3 [INFO] [stderr] Checking tracing v0.1.44 [INFO] [stderr] Checking noodles-core v0.16.0 [INFO] [stderr] Checking noodles-core v0.20.0 [INFO] [stderr] Checking lexical-write-integer v1.0.6 [INFO] [stderr] Checking lexical-parse-integer v1.0.6 [INFO] [stderr] Checking aho-corasick v1.1.4 [INFO] [stderr] Checking bit-vec v0.9.1 [INFO] [stderr] Compiling portable-atomic v1.11.1 [INFO] [stderr] Checking lexical-parse-float v1.0.6 [INFO] [stderr] Checking anstream v0.6.21 [INFO] [stderr] Checking flate2 v1.1.5 [INFO] [stderr] Checking clap_lex v0.7.6 [INFO] [stderr] Compiling rustix v1.1.2 [INFO] [stderr] Checking webpki-roots v1.0.4 [INFO] [stderr] Checking rayon-core v1.13.0 [INFO] [stderr] Checking lexical-write-float v1.0.6 [INFO] [stderr] Checking http-body v1.0.1 [INFO] [stderr] Checking clap_builder v4.5.53 [INFO] [stderr] Compiling winnow v0.7.14 [INFO] [stderr] Checking iri-string v0.7.9 [INFO] [stderr] Checking http-body-util v0.1.3 [INFO] [stderr] Compiling hashbrown v0.16.1 [INFO] [stderr] Checking noodles-bgzf v0.35.0 [INFO] [stderr] Checking mio v1.1.1 [INFO] [stderr] Checking socket2 v0.6.1 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Checking getrandom v0.3.4 [INFO] [stderr] Checking compression-codecs v0.4.36 [INFO] [stderr] Checking lexical-core v1.0.6 [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Checking noodles-csi v0.43.0 [INFO] [stderr] Compiling semver v1.0.27 [INFO] [stderr] Checking tokio v1.48.0 [INFO] [stderr] Compiling thiserror v2.0.17 [INFO] [stderr] Checking linux-raw-sys v0.11.0 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Checking rayon v1.11.0 [INFO] [stderr] Compiling rustc_version v0.4.1 [INFO] [stderr] Checking console v0.15.11 [INFO] [stderr] Checking iana-time-zone v0.1.64 [INFO] [stderr] Checking noodles-tabix v0.49.0 [INFO] [stderr] Compiling ring v0.17.14 [INFO] [stderr] Checking log v0.4.29 [INFO] [stderr] Checking noodles-bgzf v0.47.0 [INFO] [stderr] Compiling toml_datetime v0.7.5+spec-1.1.0 [INFO] [stderr] Checking noodles-vcf v0.73.0 [INFO] [stderr] Checking regex-automata v0.4.13 [INFO] [stderr] Compiling rstest_macros v0.23.0 [INFO] [stderr] Checking noodles-csi v0.56.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking wait-timeout v0.2.1 [INFO] [stderr] Checking memmap2 v0.9.9 [INFO] [stderr] Checking noodles-gff v0.57.0 [INFO] [stderr] Checking indicatif v0.17.11 [INFO] [stderr] Checking smol_str v0.3.6 [INFO] [stderr] Checking elsa v1.11.2 [INFO] [stderr] Checking nom v8.0.0 [INFO] [stderr] Checking rustc-hash v2.1.1 [INFO] [stderr] Checking rand_xorshift v0.4.0 [INFO] [stderr] Checking rand v0.9.2 [INFO] [stderr] Checking noodles-gtf v0.52.0 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Compiling anyhow v1.0.100 [INFO] [stderr] Checking toml_write v0.1.2 [INFO] [stderr] Compiling toml_parser v1.0.6+spec-1.1.0 [INFO] [stderr] Compiling relative-path v1.9.3 [INFO] [stderr] Checking tempfile v3.23.0 [INFO] [stderr] Checking plotters v0.3.7 [INFO] [stderr] Checking is-terminal v0.4.17 [INFO] [stderr] Checking futures-timer v3.0.3 [INFO] [stderr] Checking rusty-fork v0.3.1 [INFO] [stderr] Checking regex v1.12.2 [INFO] [stderr] Compiling toml_edit v0.23.10+spec-1.0.0 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Checking criterion-plot v0.5.0 [INFO] [stderr] Compiling proc-macro-crate v3.4.0 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.1 [INFO] [stderr] Compiling zerovec-derive v0.11.2 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling futures-macro v0.3.31 [INFO] [stderr] Compiling zerocopy-derive v0.8.31 [INFO] [stderr] Compiling ptr_meta_derive v0.3.1 [INFO] [stderr] Compiling bytecheck_derive v0.8.2 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Compiling munge_macro v0.4.7 [INFO] [stderr] Compiling rkyv_derive v0.8.16 [INFO] [stderr] Checking ptr_meta v0.3.1 [INFO] [stderr] Checking rancor v0.1.1 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Checking munge v0.4.7 [INFO] [stderr] Checking futures-util v0.3.31 [INFO] [stderr] Checking bytecheck v0.8.2 [INFO] [stderr] Checking rend v0.5.3 [INFO] [stderr] Checking zerofrom v0.1.6 [INFO] [stderr] Checking yoke v0.8.1 [INFO] [stderr] Checking zerovec v0.11.5 [INFO] [stderr] Checking zerotrie v0.2.3 [INFO] [stderr] Checking tinystr v0.8.2 [INFO] [stderr] Checking potential_utf v0.1.4 [INFO] [stderr] Checking rustls-webpki v0.103.8 [INFO] [stderr] Checking icu_collections v2.1.1 [INFO] [stderr] Checking tokio-util v0.7.17 [INFO] [stderr] Checking async-compression v0.4.37 [INFO] [stderr] Checking clap v4.5.53 [INFO] [stderr] Checking icu_locale_core v2.1.1 [INFO] [stderr] Checking h2 v0.4.13 [INFO] [stderr] Checking icu_provider v2.1.1 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Checking icu_normalizer v2.1.1 [INFO] [stderr] Checking icu_properties v2.1.2 [INFO] [stderr] Checking half v2.7.1 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking serde_urlencoded v0.7.1 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking superintervals v0.3.1 [INFO] [stderr] Checking chrono v0.4.42 [INFO] [stderr] Checking serde_spanned v0.6.9 [INFO] [stderr] Checking toml_datetime v0.6.11 [INFO] [stderr] Checking tinytemplate v1.2.1 [INFO] [stderr] Checking serde_yaml v0.9.34+deprecated [INFO] [stderr] Checking ciborium-ll v0.2.2 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking toml_edit v0.22.27 [INFO] [stderr] Checking ciborium v0.2.2 [INFO] [stderr] Checking idna_adapter v1.2.1 [INFO] [stderr] Checking proptest v1.9.0 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking url v2.5.7 [INFO] [stderr] Checking tower v0.5.2 [INFO] [stderr] Checking futures-executor v0.3.31 [INFO] [stderr] Checking futures v0.3.31 [INFO] [stderr] Checking criterion v0.5.1 [INFO] [stderr] Checking tower-http v0.6.8 [INFO] [stderr] Checking toml v0.8.23 [INFO] [stderr] Checking hyper v1.8.1 [INFO] [stderr] Checking tokio-rustls v0.26.4 [INFO] [stderr] Checking rkyv v0.8.16 [INFO] [stderr] Checking hyper-util v0.1.19 [INFO] [stderr] Checking rstest v0.23.0 [INFO] [stderr] Checking hyper-rustls v0.27.7 [INFO] [stderr] Checking reqwest v0.12.28 [INFO] [stderr] Checking ferro-hgvs v1.0.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking ferro-hgvs-soak-tests v0.0.0 (/opt/rustwide/workdir/tests-soak) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 41s [INFO] running `Command { std: "docker" "inspect" "0ea9584c024108be5da9ce05e482a910faefb6f4001f5dcdf0174160027d7bdd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0ea9584c024108be5da9ce05e482a910faefb6f4001f5dcdf0174160027d7bdd", kill_on_drop: false }` [INFO] [stdout] 0ea9584c024108be5da9ce05e482a910faefb6f4001f5dcdf0174160027d7bdd