[INFO] fetching crate deepbiop-gtf 0.1.17...
[INFO] checking deepbiop-gtf-0.1.17 against 012c0bd4d516934012c9a1ecb26e9eb283d2ed75 for pr-133502-29
[INFO] extracting crate deepbiop-gtf 0.1.17 into /workspace/builds/worker-1-tc1/source
[INFO] started tweaking crates.io crate deepbiop-gtf 0.1.17
[INFO] finished tweaking crates.io crate deepbiop-gtf 0.1.17
[INFO] tweaked toml for crates.io crate deepbiop-gtf 0.1.17 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-gtf 0.1.17 on toolchain 012c0bd4d516934012c9a1ecb26e9eb283d2ed75
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+012c0bd4d516934012c9a1ecb26e9eb283d2ed75" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-gtf 0.1.17 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+012c0bd4d516934012c9a1ecb26e9eb283d2ed75" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:52:12
[INFO] [stderr]    |
[INFO] [stderr] 52 | homepage = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 57 | repository = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]    |              ---------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `deepbiop-gtf` (manifest) generated 1 warning
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded numpy v0.29.0
[INFO] [stderr]   Downloaded noodles-vcf v0.93.0
[INFO] [stderr]   Downloaded alloc-stdlib v0.3.0
[INFO] [stderr]   Downloaded pest_generator v2.9.1
[INFO] [stderr]   Downloaded pest_derive v2.9.1
[INFO] [stderr]   Downloaded noodles v0.116.0
[INFO] [stderr]   Downloaded snap v1.1.2
[INFO] [stderr]   Downloaded textwrap v0.16.4
[INFO] [stderr]   Downloaded noodles-gff v0.62.0
[INFO] [stderr]   Downloaded noodles-csi v0.61.0
[INFO] [stderr]   Downloaded alloc-no-stdlib v3.0.0
[INFO] [stderr]   Downloaded deepbiop-core v0.1.17
[INFO] [stderr]   Downloaded arrow-schema v60.0.0
[INFO] [stderr]   Downloaded safetensors v0.8.0
[INFO] [stderr]   Downloaded noodles-sam v0.90.0
[INFO] [stderr]   Downloaded arrow-buffer v60.0.0
[INFO] [stderr]   Downloaded arrow-ipc v60.0.0
[INFO] [stderr]   Downloaded arrow-string v60.0.0
[INFO] [stderr]   Downloaded arrow-arith v60.0.0
[INFO] [stderr]   Downloaded deepbiop-utils v0.1.17
[INFO] [stderr]   Downloaded arrow-select v60.0.0
[INFO] [stderr]   Downloaded arrow-json v60.0.0
[INFO] [stderr]   Downloaded arrow-data v60.0.0
[INFO] [stderr]   Downloaded candle-core v0.11.0
[INFO] [stderr]   Downloaded arrow-array v60.0.0
[INFO] [stderr]   Downloaded arrow-cast v60.0.0
[INFO] [stderr]   Downloaded arrow-csv v60.0.0
[INFO] [stderr]   Downloaded needletail v0.7.3
[INFO] [stderr]   Downloaded noodles-tabix v0.67.0
[INFO] [stderr]   Downloaded brotli v9.0.0
[INFO] [stderr]   Downloaded pyo3-stub-gen v0.23.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.51.0
[INFO] [stderr]   Downloaded is-macro v0.3.8
[INFO] [stderr]   Downloaded noodles-bam v0.95.0
[INFO] [stderr]   Downloaded icu_segmenter_data v2.3.0
[INFO] [stderr]   Downloaded pyo3-stub-gen-derive v0.23.0
[INFO] [stderr]   Downloaded noodles-fastq v0.23.0
[INFO] [stderr]   Downloaded noodles-fasta v0.66.0
[INFO] [stderr]   Downloaded arrow-row v60.0.0
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] [stderr]   Downloaded lexical v7.0.5
[INFO] [stderr]   Downloaded brotli-decompressor v6.0.0
[INFO] [stderr]   Downloaded ndarray-npy v0.10.0
[INFO] [stderr]   Downloaded pest v2.9.1
[INFO] [stderr]   Downloaded noodles-core v0.20.0
[INFO] [stderr]   Downloaded arrow-cmp v60.0.0
[INFO] [stderr]   Downloaded icu_segmenter v2.3.0
[INFO] [stderr]   Downloaded parquet v60.0.0
[INFO] [stderr]   Downloaded bit-vec v0.10.1
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded arrow-ord v60.0.0
[INFO] [stderr]   Downloaded pest_meta v2.9.1
[INFO] [stderr]   Downloaded arrow v60.0.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 1d734d1049ca5348c851e0bad72f92a189d56880e866ed296f12f907749cda83
[INFO] running `Command { std: "docker" "start" "1d734d1049ca5348c851e0bad72f92a189d56880e866ed296f12f907749cda83", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1d734d1049ca5348c851e0bad72f92a189d56880e866ed296f12f907749cda83", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1d734d1049ca5348c851e0bad72f92a189d56880e866ed296f12f907749cda83" "/opt/rustwide/cargo-home/bin/cargo" "+012c0bd4d516934012c9a1ecb26e9eb283d2ed75" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1d734d1049ca5348c851e0bad72f92a189d56880e866ed296f12f907749cda83", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1d734d1049ca5348c851e0bad72f92a189d56880e866ed296f12f907749cda83" "/opt/rustwide/cargo-home/bin/cargo" "+012c0bd4d516934012c9a1ecb26e9eb283d2ed75" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:52:12
[INFO] [stderr]    |
[INFO] [stderr] 52 | homepage = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 57 | repository = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]    |              ---------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `deepbiop-gtf` (manifest) generated 1 warning
[INFO] [stderr]     Checking either v1.18.0
[INFO] [stderr]    Compiling find-msvc-tools v0.1.13
[INFO] [stderr]     Checking aho-corasick v1.1.5
[INFO] [stderr]    Compiling syn v3.0.6
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]     Checking zlib-rs v0.6.8
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking arrow-schema v60.0.0
[INFO] [stderr]    Compiling zerocopy-derive v0.8.57
[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]     Checking num-bigint v0.5.1
[INFO] [stderr]    Compiling pulp v0.22.3
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]    Compiling dyn-stack-macros v0.1.3
[INFO] [stderr]     Checking pulp-wasm-simd-flag v0.1.1
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]     Checking simd-adler32 v0.3.10
[INFO] [stderr]    Compiling cc v1.4.7
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking bit-vec v0.10.1
[INFO] [stderr]     Checking miniz_oxide v0.9.1
[INFO] [stderr]     Checking serde_json v1.0.151
[INFO] [stderr]    Compiling flatbuffers v25.12.19
[INFO] [stderr]     Checking regex-automata v0.4.18
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]     Checking smallvec v1.16.1
[INFO] [stderr]    Compiling rustix v1.1.5
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]    Compiling ucd-trie v0.1.7
[INFO] [stderr]     Checking atoi v3.1.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.11
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling pest v2.9.1
[INFO] [stderr]     Checking alloc-no-stdlib v3.0.0
[INFO] [stderr]    Compiling esaxx-rs v0.1.10
[INFO] [stderr]     Checking flate2 v1.1.10
[INFO] [stderr]    Compiling zstd-safe v7.3.0
[INFO] [stderr]    Compiling zstd-safe v8.0.0
[INFO] [stderr]     Checking alloc-stdlib v0.3.0
[INFO] [stderr]     Checking nom v7.1.3
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]    Compiling monostate-impl v0.1.18
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]    Compiling snap v1.1.2
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]     Checking base64 v0.13.1
[INFO] [stderr]    Compiling macro_rules_attribute-proc_macro v0.2.3
[INFO] [stderr]    Compiling icu_segmenter_data v2.3.0
[INFO] [stderr]     Checking zerocopy v0.8.57
[INFO] [stderr]     Checking monostate v0.1.18
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking hashbrown v0.16.1
[INFO] [stderr]     Checking brotli-decompressor v6.0.0
[INFO] [stderr]     Checking macro_rules_attribute v0.2.3
[INFO] [stderr]     Checking unicode-normalization-alignments v0.1.12
[INFO] [stderr]     Checking unicode_categories v0.1.1
[INFO] [stderr]     Checking typed-path v0.12.3
[INFO] [stderr]     Checking bumpalo v3.20.3
[INFO] [stderr]    Compiling synstructure v0.14.0
[INFO] [stderr]     Checking twox-hash v2.1.4
[INFO] [stderr] error: could not compile `regex-automata` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/012c0bd4d516934012c9a1ecb26e9eb283d2ed75/bin/rustc --crate-name regex_automata --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/regex-automata-0.4.18/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat,unused-externs-silent --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc"' --cfg 'feature="dfa-onepass"' --cfg 'feature="dfa-search"' --cfg 'feature="hybrid"' --cfg 'feature="meta"' --cfg 'feature="nfa-backtrack"' --cfg 'feature="nfa-pikevm"' --cfg 'feature="nfa-thompson"' --cfg 'feature="perf-inline"' --cfg 'feature="perf-literal"' --cfg 'feature="perf-literal-multisubstring"' --cfg 'feature="perf-literal-substring"' --cfg 'feature="std"' --cfg 'feature="syntax"' --cfg 'feature="unicode"' --cfg 'feature="unicode-age"' --cfg 'feature="unicode-bool"' --cfg 'feature="unicode-case"' --cfg 'feature="unicode-gencat"' --cfg 'feature="unicode-perl"' --cfg 'feature="unicode-script"' --cfg 'feature="unicode-segment"' --cfg 'feature="unicode-word-boundary"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc", "default", "dfa", "dfa-build", "dfa-onepass", "dfa-search", "hybrid", "internal-instrument", "internal-instrument-pikevm", "logging", "meta", "nfa", "nfa-backtrack", "nfa-pikevm", "nfa-thompson", "perf", "perf-inline", "perf-literal", "perf-literal-multisubstring", "perf-literal-substring", "std", "syntax", "unicode", "unicode-age", "unicode-bool", "unicode-case", "unicode-gencat", "unicode-perl", "unicode-script", "unicode-segment", "unicode-word-boundary"))' -C metadata=2f87a364e4984e32 -C extra-filename=-fc96e26cafba8fb4 --out-dir /opt/rustwide/target/debug/build/regex-automata/fc96e26cafba8fb4/out -L dependency=/opt/rustwide/target/debug/build/memchr/b924193483665774/out --extern aho_corasick=/opt/rustwide/target/debug/build/aho-corasick/a69c837171192e07/out/libaho_corasick-a69c837171192e07.rmeta --extern memchr=/opt/rustwide/target/debug/build/memchr/b924193483665774/out/libmemchr-b924193483665774.rmeta --extern regex_syntax=/opt/rustwide/target/debug/build/regex-syntax/aa2c0ef21912879c/out/libregex_syntax-aa2c0ef21912879c.rmeta --cap-lints allow --cap-lints=forbid --force-warn=unused_crate_dependencies` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/012c0bd4d516934012c9a1ecb26e9eb283d2ed75/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-3.0.6/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat,unused-externs-silent --crate-type lib --emit=dep-info,metadata,link -Z embed-metadata=no -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=7abbf8278a1e5d7a -C extra-filename=-20c306924e54b34a --out-dir /opt/rustwide/target/debug/build/syn/20c306924e54b34a/out -L dependency=/opt/rustwide/target/debug/build/proc-macro2/c062a139c850ccf4/out -L dependency=/opt/rustwide/target/debug/build/unicode-ident/06275983cc9514f8/out --extern proc_macro2=/opt/rustwide/target/debug/build/proc-macro2/c062a139c850ccf4/out/libproc_macro2-c062a139c850ccf4.rmeta --extern quote=/opt/rustwide/target/debug/build/quote/63a63655125647b2/out/libquote-63a63655125647b2.rmeta --extern unicode_ident=/opt/rustwide/target/debug/build/unicode-ident/06275983cc9514f8/out/libunicode_ident-06275983cc9514f8.rmeta --cap-lints allow --cap-lints=forbid --force-warn=unused_crate_dependencies` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "1d734d1049ca5348c851e0bad72f92a189d56880e866ed296f12f907749cda83", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1d734d1049ca5348c851e0bad72f92a189d56880e866ed296f12f907749cda83", kill_on_drop: false }`
[INFO] [stdout] 1d734d1049ca5348c851e0bad72f92a189d56880e866ed296f12f907749cda83
