[INFO] cloning repository https://github.com/stela2502/bam_links
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/bam_links" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_links", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_links'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 02b7005bc3a322be7a96c08dfe724f14fa515ffa
[INFO] checking stela2502/bam_links against 5b237c915528dadada3f674b90c7c80368b632be for pr-133502-29
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_links" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/stela2502/bam_links
[INFO] finished tweaking git repo https://github.com/stela2502/bam_links
[INFO] tweaked toml for git repo https://github.com/stela2502/bam_links written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/stela2502/bam_links on toolchain 5b237c915528dadada3f674b90c7c80368b632be
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5b237c915528dadada3f674b90c7c80368b632be" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/stela2502/bam_links already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5b237c915528dadada3f674b90c7c80368b632be" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded curl-sys v0.4.84+curl-8.17.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] e8da92e47ce07d9e616bf3bb8ff7402555f31b2758cdb154356d69c4075fc60d
[INFO] running `Command { std: "docker" "start" "e8da92e47ce07d9e616bf3bb8ff7402555f31b2758cdb154356d69c4075fc60d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e8da92e47ce07d9e616bf3bb8ff7402555f31b2758cdb154356d69c4075fc60d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e8da92e47ce07d9e616bf3bb8ff7402555f31b2758cdb154356d69c4075fc60d" "/opt/rustwide/cargo-home/bin/cargo" "+5b237c915528dadada3f674b90c7c80368b632be" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e8da92e47ce07d9e616bf3bb8ff7402555f31b2758cdb154356d69c4075fc60d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e8da92e47ce07d9e616bf3bb8ff7402555f31b2758cdb154356d69c4075fc60d" "/opt/rustwide/cargo-home/bin/cargo" "+5b237c915528dadada3f674b90c7c80368b632be" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling libc v0.2.178
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking console v0.16.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking indicatif v0.18.3
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking url v2.5.7
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]    Compiling cc v1.2.48
[INFO] [stderr]    Compiling openssl-src v300.5.4+3.5.4
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling openssl-sys v0.9.111
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.84+curl-8.17.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking rust-htslib v0.49.0
[INFO] [stderr]     Checking bam_links v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `header_view`
[INFO] [stdout]   --> src/main.rs:40:9
[INFO] [stdout]    |
[INFO] [stdout] 40 |     let header_view = bam.header().clone();  // for tid2name()
[INFO] [stdout]    |         ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_header_view`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `header_view`
[INFO] [stdout]   --> src/main.rs:40:9
[INFO] [stdout]    |
[INFO] [stdout] 40 |     let header_view = bam.header().clone();  // for tid2name()
[INFO] [stdout]    |         ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_header_view`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 57.32s
[INFO] running `Command { std: "docker" "inspect" "e8da92e47ce07d9e616bf3bb8ff7402555f31b2758cdb154356d69c4075fc60d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e8da92e47ce07d9e616bf3bb8ff7402555f31b2758cdb154356d69c4075fc60d", kill_on_drop: false }`
[INFO] [stdout] e8da92e47ce07d9e616bf3bb8ff7402555f31b2758cdb154356d69c4075fc60d
