[INFO] cloning repository https://github.com/koisland/rs-nucflag [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/koisland/rs-nucflag" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-nucflag", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-nucflag'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] f7f1596a214fd0beb9c7ca4b543d69755b8d345d [INFO] checking koisland/rs-nucflag against 012c0bd4d516934012c9a1ecb26e9eb283d2ed75 for pr-133502-29 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-nucflag" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/koisland/rs-nucflag [INFO] finished tweaking git repo https://github.com/koisland/rs-nucflag [INFO] tweaked toml for git repo https://github.com/koisland/rs-nucflag written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/koisland/rs-nucflag on toolchain 012c0bd4d516934012c9a1ecb26e9eb283d2ed75 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+012c0bd4d516934012c9a1ecb26e9eb283d2ed75" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/koisland/rs-nucflag already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+012c0bd4d516934012c9a1ecb26e9eb283d2ed75" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded noodles v0.96.0 [INFO] [stderr] Downloaded suffix v1.3.0 [INFO] [stderr] Downloaded noodles-csi v0.46.0 [INFO] [stderr] Downloaded noodles-sam v0.74.0 [INFO] [stderr] Downloaded serde_stacker v0.1.14 [INFO] [stderr] Downloaded murmur3 v0.5.2 [INFO] [stderr] Downloaded array-init-cursor v0.2.1 [INFO] [stderr] Downloaded noodles-core v0.17.0 [INFO] [stderr] Downloaded pyo3-macros v0.26.0 [INFO] [stderr] Downloaded polars-error v0.52.0 [INFO] [stderr] Downloaded noodles-fasta v0.51.0 [INFO] [stderr] Downloaded psm v0.1.31 [INFO] [stderr] Downloaded stacker v0.1.24 [INFO] [stderr] Downloaded pyo3-build-config v0.26.0 [INFO] [stderr] Downloaded noodles-bgzf v0.38.0 [INFO] [stderr] Downloaded planus v1.1.1 [INFO] [stderr] Downloaded pyo3-macros-backend v0.26.0 [INFO] [stderr] Downloaded noodles-bam v0.78.0 [INFO] [stderr] Downloaded polars-utils v0.52.0 [INFO] [stderr] Downloaded pyo3-ffi v0.26.0 [INFO] [stderr] Downloaded polars-arrow-format v0.2.1 [INFO] [stderr] 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v0.17.0 [INFO] [stderr] Downloaded fs4 v0.13.1 [INFO] [stderr] Downloaded polars-lazy v0.52.0 [INFO] [stderr] Downloaded polars-mem-engine v0.52.0 [INFO] [stderr] Downloaded pyo3 v0.26.0 [INFO] [stderr] Downloaded coitrees v0.4.0 [INFO] [stderr] Downloaded polars-stream v0.52.0 [INFO] [stderr] Downloaded polars-expr v0.52.0 [INFO] [stderr] Downloaded rs-moddotplot v0.1.0 [INFO] [stderr] Downloaded digits_iterator v0.1.0 [INFO] [stderr] Downloaded simple_logger v5.2.0 [INFO] [stderr] Downloaded pyo3-polars v0.25.0 [INFO] [stderr] Downloaded noodles-csi v0.44.0 [INFO] [stderr] Downloaded noodles-core v0.16.0 [INFO] [stderr] Downloaded noodles v0.91.0 [INFO] [stderr] Downloaded noodles-bam v0.76.0 [INFO] [stderr] Downloaded noodles-bgzf v0.36.0 [INFO] [stderr] Downloaded noodles-sam v0.72.0 [INFO] [stderr] Downloaded cg2cs v0.1.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 3dacccd77d614cb6f36838920ecc705bc52de80e5f1f0bb2804a04f80f4d2d0a [INFO] running `Command { std: "docker" "start" "3dacccd77d614cb6f36838920ecc705bc52de80e5f1f0bb2804a04f80f4d2d0a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3dacccd77d614cb6f36838920ecc705bc52de80e5f1f0bb2804a04f80f4d2d0a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "3dacccd77d614cb6f36838920ecc705bc52de80e5f1f0bb2804a04f80f4d2d0a" "/opt/rustwide/cargo-home/bin/cargo" "+012c0bd4d516934012c9a1ecb26e9eb283d2ed75" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3dacccd77d614cb6f36838920ecc705bc52de80e5f1f0bb2804a04f80f4d2d0a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "3dacccd77d614cb6f36838920ecc705bc52de80e5f1f0bb2804a04f80f4d2d0a" "/opt/rustwide/cargo-home/bin/cargo" "+012c0bd4d516934012c9a1ecb26e9eb283d2ed75" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Checking memchr v2.8.1 [INFO] [stderr] Compiling target-lexicon v0.13.5 [INFO] [stderr] Compiling pkg-config v0.3.33 [INFO] [stderr] Checking zlib-rs v0.6.3 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Compiling libc v0.2.186 [INFO] [stderr] Compiling libm v0.2.16 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking indexmap v2.14.0 [INFO] [stderr] Checking bitflags v2.11.1 [INFO] [stderr] Checking rustls-pki-types v1.14.1 [INFO] [stderr] Compiling zerocopy v0.8.50 [INFO] [stderr] Checking either v1.16.0 [INFO] [stderr] Compiling rustls v0.23.40 [INFO] [stderr] Checking getrandom v0.3.4 [INFO] [stderr] Checking parking_lot_core v0.9.12 [INFO] [stderr] Checking rand_core v0.9.5 [INFO] [stderr] Checking log v0.4.30 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Checking rustls-native-certs v0.8.4 [INFO] [stderr] Checking parking_lot v0.12.5 [INFO] [stderr] 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v0.36.0 [INFO] [stderr] Checking noodles-csi v0.44.0 [INFO] [stderr] Checking noodles-csi v0.46.0 [INFO] [stderr] Checking noodles-fasta v0.51.0 [INFO] [stderr] Checking now v0.1.3 [INFO] [stderr] Checking noodles-sam v0.74.0 [INFO] [stderr] Checking noodles-sam v0.72.0 [INFO] [stderr] Checking futures-executor v0.3.32 [INFO] [stderr] Checking futures v0.3.32 [INFO] [stderr] Checking polars-parquet-format v0.1.0 [INFO] [stderr] Checking idna_adapter v1.2.2 [INFO] [stderr] Checking http-body v1.0.1 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking http-body-util v0.1.3 [INFO] [stderr] Checking url v2.5.8 [INFO] [stderr] Checking toml v0.8.23 [INFO] [stderr] Checking noodles-bam v0.78.0 [INFO] [stderr] Checking noodles-bam v0.76.0 [INFO] [stderr] Checking noodles-cram v0.81.0 [INFO] [stderr] Checking noodles v0.91.0 [INFO] [stderr] Checking tokio-util v0.7.18 [INFO] [stderr] Checking tokio-rustls v0.26.4 [INFO] [stderr] Checking tower v0.5.3 [INFO] [stderr] Checking noodles v0.96.0 [INFO] [stderr] Checking rs-moddotplot v0.1.0 [INFO] [stderr] Checking tower-http v0.6.11 [INFO] [stderr] Checking h2 v0.4.14 [INFO] [stderr] Checking lz4 v1.28.1 [INFO] [stderr] Checking hyper v1.10.1 [INFO] [stderr] Checking hyper-util v0.1.20 [INFO] [stderr] Checking hyper-rustls v0.27.9 [INFO] [stderr] Checking reqwest v0.12.28 [INFO] [stderr] Checking object_store v0.12.5 [INFO] [stderr] Checking polars-error v0.52.0 [INFO] [stderr] Checking polars-dtype v0.52.0 [INFO] [stderr] Checking polars-row v0.52.0 [INFO] [stderr] Checking polars-parquet v0.52.0 [INFO] [stderr] Checking polars-time v0.52.0 [INFO] [stderr] Checking polars-io v0.52.0 [INFO] [stderr] Checking polars-mem-engine v0.52.0 [INFO] [stderr] Checking rs-nucflag v0.1.1 (/opt/rustwide/workdir/core) [INFO] [stderr] Checking pyo3-polars v0.25.0 [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> core/src/peak.rs:23:9 [INFO] [stdout] | [INFO] [stdout] 23 | bail!("No colname.") [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: macro invocations at the end of a block are treated as expressions [INFO] [stdout] = note: to ignore the value produced by the macro, add a semicolon after the invocation of `bail` [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: `#[warn(semicolon_in_expressions_from_non_local_macros)]` (part of `#[warn(future_incompatible)]`) on by default [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> core/src/preset.rs:30:18 [INFO] [stdout] | [INFO] [stdout] 30 | _ => bail!("Invalid preset. {s}"), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> core/src/pileup.rs:270:13 [INFO] [stdout] | [INFO] [stdout] 270 | bail!("Invalid cigar string. Must be extended cigar (=/X) or include cs tag.") [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: macro invocations at the end of a block are treated as expressions [INFO] [stdout] = note: to ignore the value produced by the macro, add a semicolon after the invocation of `bail` [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> core/src/repeats.rs:143:18 [INFO] [stdout] | [INFO] [stdout] 143 | _ => bail!("Invalid repeat type, {s}."), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> core/src/peak.rs:23:9 [INFO] [stdout] | [INFO] [stdout] 23 | bail!("No colname.") [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: macro invocations at the end of a block are treated as expressions [INFO] [stdout] = note: to ignore the value produced by the macro, add a semicolon after the invocation of `bail` [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: `#[warn(semicolon_in_expressions_from_non_local_macros)]` (part of `#[warn(future_incompatible)]`) on by default [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> core/src/preset.rs:30:18 [INFO] [stdout] | [INFO] [stdout] 30 | _ => bail!("Invalid preset. {s}"), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> core/src/pileup.rs:270:13 [INFO] [stdout] | [INFO] [stdout] 270 | bail!("Invalid cigar string. Must be extended cigar (=/X) or include cs tag.") [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: macro invocations at the end of a block are treated as expressions [INFO] [stdout] = note: to ignore the value produced by the macro, add a semicolon after the invocation of `bail` [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> core/src/repeats.rs:143:18 [INFO] [stdout] | [INFO] [stdout] 143 | _ => bail!("Invalid repeat type, {s}."), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking example_cli v0.1.0 (/opt/rustwide/workdir/examples) [INFO] [stderr] Checking py-nucflag v0.1.12 (/opt/rustwide/workdir/py) [INFO] [stderr] warning: unused dependency `noodles` [INFO] [stderr] --> py/Cargo.toml:16:1 [INFO] [stderr] | [INFO] [stderr] 16 | noodles = { version = "0.91.0", features = ["bam"] } [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `cargo::unused_dependencies` is set to `warn` by default [INFO] [stderr] help: consider removing the dependency on `noodles` [INFO] [stderr] warning: `py-nucflag` (manifest) generated 1 warning [INFO] [stderr] warning: unused dependency `clap` [INFO] [stderr] --> core/Cargo.toml:23:1 [INFO] [stderr] | [INFO] [stderr] 23 | clap = { version = "4.5.29", features = ["derive"] } [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `cargo::unused_dependencies` is set to `warn` by default [INFO] [stderr] help: consider removing the dependency on `clap` [INFO] [stderr] warning: `rs-nucflag` (manifest) generated 1 warning [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 28s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: polars-arrow v0.52.0, polars-core v0.52.0, polars-expr v0.52.0, polars-plan v0.52.0, rs-nucflag v0.1.1 (/opt/rustwide/workdir/core) [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4` [INFO] running `Command { std: "docker" "inspect" "3dacccd77d614cb6f36838920ecc705bc52de80e5f1f0bb2804a04f80f4d2d0a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3dacccd77d614cb6f36838920ecc705bc52de80e5f1f0bb2804a04f80f4d2d0a", kill_on_drop: false }` [INFO] [stdout] 3dacccd77d614cb6f36838920ecc705bc52de80e5f1f0bb2804a04f80f4d2d0a