[INFO] cloning repository https://github.com/BioInfo/dendrite
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/BioInfo/dendrite" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBioInfo%2Fdendrite", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBioInfo%2Fdendrite'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 42d0df68b36f8c316d9de560bb56e35c30b3693c
[INFO] checking BioInfo/dendrite against 760e1de835e253bf28bbcbfee38b5e8ed9ffe074 for pr-133502-26
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBioInfo%2Fdendrite" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/BioInfo/dendrite
[INFO] finished tweaking git repo https://github.com/BioInfo/dendrite
[INFO] tweaked toml for git repo https://github.com/BioInfo/dendrite written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/BioInfo/dendrite on toolchain 760e1de835e253bf28bbcbfee38b5e8ed9ffe074
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+760e1de835e253bf28bbcbfee38b5e8ed9ffe074" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/BioInfo/dendrite already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+760e1de835e253bf28bbcbfee38b5e8ed9ffe074" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1fa6594d87c8fa7b311925a7a77a16f539833322d9dfba4ce891f211db2f90b1" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 7a2c7caa6a3ee665390b3d666b24065134bc2958879b24116d56c521f8b35f48
[INFO] running `Command { std: "docker" "start" "7a2c7caa6a3ee665390b3d666b24065134bc2958879b24116d56c521f8b35f48", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7a2c7caa6a3ee665390b3d666b24065134bc2958879b24116d56c521f8b35f48", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7a2c7caa6a3ee665390b3d666b24065134bc2958879b24116d56c521f8b35f48" "/opt/rustwide/cargo-home/bin/cargo" "+760e1de835e253bf28bbcbfee38b5e8ed9ffe074" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7a2c7caa6a3ee665390b3d666b24065134bc2958879b24116d56c521f8b35f48", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7a2c7caa6a3ee665390b3d666b24065134bc2958879b24116d56c521f8b35f48" "/opt/rustwide/cargo-home/bin/cargo" "+760e1de835e253bf28bbcbfee38b5e8ed9ffe074" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling quote v1.0.42
[INFO] [stderr]    Compiling libc v0.2.178
[INFO] [stderr]     Checking cfg-if v1.0.4
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling zerocopy v0.8.31
[INFO] [stderr]     Checking once_cell v1.21.3
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling autocfg v1.5.0
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling syn v2.0.111
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]     Checking bitflags v2.10.0
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]     Checking hashbrown v0.16.1
[INFO] [stderr]     Checking equivalent v1.0.2
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking rand_core v0.9.3
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]     Checking itoa v1.0.16
[INFO] [stderr]    Compiling serde_json v1.0.147
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling find-msvc-tools v0.1.5
[INFO] [stderr]     Checking pin-project-lite v0.2.16
[INFO] [stderr]     Checking zmij v0.1.8
[INFO] [stderr]     Checking indexmap v2.12.1
[INFO] [stderr]    Compiling cc v1.2.50
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]    Compiling pulp v0.21.5
[INFO] [stderr]    Compiling winnow v0.7.14
[INFO] [stderr]    Compiling toml_datetime v0.7.5+spec-1.1.0
[INFO] [stderr]     Checking reborrow v0.5.5
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling dyn-stack-macros v0.1.3
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]     Checking tracing-core v0.1.36
[INFO] [stderr]    Compiling toml_parser v1.0.6+spec-1.1.0
[INFO] [stderr]    Compiling rustversion v1.0.22
[INFO] [stderr]    Compiling toml_edit v0.23.10+spec-1.0.0
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling proc-macro-crate v3.4.0
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]     Checking futures-core v0.3.31
[INFO] [stderr]    Compiling ident_case v1.0.1
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]     Checking futures-sink v0.3.31
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling bindgen v0.71.1
[INFO] [stderr]     Checking futures-channel v0.3.31
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling log v0.4.29
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling rustc-hash v2.1.1
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]     Checking futures-task v0.3.31
[INFO] [stderr]     Checking slab v0.4.11
[INFO] [stderr]    Compiling thiserror v2.0.17
[INFO] [stderr]     Checking futures-io v0.3.31
[INFO] [stderr]     Checking pin-utils v0.1.0
[INFO] [stderr]    Compiling parking_lot_core v0.9.12
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]    Compiling semver v1.0.27
[INFO] [stderr]    Compiling zip v1.1.4
[INFO] [stderr]     Checking scopeguard v1.2.0
[INFO] [stderr]    Compiling ref-cast v1.0.25
[INFO] [stderr]     Checking lock_api v0.4.14
[INFO] [stderr]    Compiling rustc_version v0.4.1
[INFO] [stderr]     Checking memmap2 v0.9.9
[INFO] [stderr]    Compiling onig_sys v69.9.1
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]    Compiling portable-atomic v1.12.0
[INFO] [stderr]    Compiling rstest_macros v0.23.0
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]    Compiling esaxx-rs v0.1.10
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking borrow-or-share v0.2.4
[INFO] [stderr]     Checking unicode-width v0.2.2
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking anstyle-parse v0.2.7
[INFO] [stderr]     Checking console v0.15.11
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking castaway v0.2.4
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.2
[INFO] [stderr]     Checking colorchoice v1.0.4
[INFO] [stderr]    Compiling llguidance v1.4.0
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]     Checking number_prefix v0.4.0
[INFO] [stderr]    Compiling relative-path v1.9.3
[INFO] [stderr]     Checking unicode-segmentation v1.12.0
[INFO] [stderr]    Compiling macro_rules_attribute-proc_macro v0.2.2
[INFO] [stderr]     Checking anstyle-query v1.1.5
[INFO] [stderr]     Checking ryu v1.0.21
[INFO] [stderr]     Checking base64 v0.13.1
[INFO] [stderr]     Checking hashbrown v0.15.5
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]     Checking macro_rules_attribute v0.2.2
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]     Checking rayon-cond v0.4.0
[INFO] [stderr]     Checking indicatif v0.17.11
[INFO] [stderr]     Checking fancy-regex v0.13.0
[INFO] [stderr]     Checking unicode-normalization-alignments v0.1.12
[INFO] [stderr]     Checking mio v1.1.1
[INFO] [stderr]     Checking socket2 v0.6.1
[INFO] [stderr]     Checking signal-hook-registry v1.4.7
[INFO] [stderr]     Checking unicode_categories v0.1.1
[INFO] [stderr]     Checking clap_lex v0.7.6
[INFO] [stderr]     Checking ciborium-io v0.2.2
[INFO] [stderr]     Checking bytes v1.11.0
[INFO] [stderr]     Checking plotters-backend v0.3.7
[INFO] [stderr]     Checking futures-timer v3.0.3
[INFO] [stderr]     Checking clap_builder v4.5.53
[INFO] [stderr]     Checking plotters-svg v0.3.7
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]     Checking cast v0.3.0
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking criterion-plot v0.5.0
[INFO] [stderr]     Checking plotters v0.3.7
[INFO] [stderr]     Checking is-terminal v0.4.17
[INFO] [stderr]     Checking oorandom v11.1.5
[INFO] [stderr]     Checking linux-raw-sys v0.11.0
[INFO] [stderr]     Checking anes v0.1.6
[INFO] [stderr]     Checking getrandom v0.2.16
[INFO] [stderr]     Checking fastrand v2.3.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking wait-timeout v0.2.1
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking rand_xorshift v0.4.0
[INFO] [stderr]     Checking unarray v0.1.4
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]     Checking tracing-log v0.2.0
[INFO] [stderr]     Checking sharded-slab v0.1.7
[INFO] [stderr]     Checking matchers v0.2.0
[INFO] [stderr]     Checking thread_local v1.1.9
[INFO] [stderr]     Checking nu-ansi-term v0.50.3
[INFO] [stderr]     Checking tempfile v3.24.0
[INFO] [stderr]     Checking rusty-fork v0.3.1
[INFO] [stderr]     Checking onig v6.5.1
[INFO] [stderr]    Compiling zerocopy-derive v0.8.31
[INFO] [stderr]    Compiling bytemuck_derive v1.10.2
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling tracing-attributes v0.1.31
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling futures-macro v0.3.31
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]     Checking futures-util v0.3.31
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking dyn-stack v0.13.2
[INFO] [stderr]    Compiling num_enum_derive v0.7.5
[INFO] [stderr]     Checking rand_distr v0.5.1
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]    Compiling darling_macro v0.20.11
[INFO] [stderr]     Checking tracing v0.1.44
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]     Checking futures-executor v0.3.31
[INFO] [stderr]    Compiling dendrite-ffi v0.1.0 (/opt/rustwide/workdir/crates/dendrite-ffi)
[INFO] [stderr]     Checking gemm-common v0.18.2
[INFO] [stderr]    Compiling ref-cast-impl v1.0.25
[INFO] [stderr]     Checking gemm-f32 v0.18.2
[INFO] [stderr]     Checking gemm-c32 v0.18.2
[INFO] [stderr]     Checking gemm-f16 v0.18.2
[INFO] [stderr]     Checking gemm-f64 v0.18.2
[INFO] [stderr]     Checking gemm-c64 v0.18.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking yoke v0.7.5
[INFO] [stderr] warning: dendrite-ffi@0.1.0: CUDA not found, building without GPU support
[INFO] [stderr]     Checking futures v0.3.31
[INFO] [stderr]     Checking float8 v0.5.0
[INFO] [stderr]    Compiling darling v0.20.11
[INFO] [stderr]    Compiling derive_builder_core v0.20.2
[INFO] [stderr]    Compiling strum_macros v0.27.2
[INFO] [stderr]     Checking gemm v0.18.2
[INFO] [stderr]    Compiling monostate-impl v0.1.18
[INFO] [stderr]     Checking monostate v0.1.18
[INFO] [stderr]    Compiling tokio-macros v2.6.0
[INFO] [stderr]     Checking safetensors v0.4.5
[INFO] [stderr]     Checking ug v0.5.0
[INFO] [stderr]     Checking safetensors v0.6.2
[INFO] [stderr]     Checking fluent-uri v0.3.2
[INFO] [stderr]     Checking spm_precompiled v0.1.4
[INFO] [stderr]     Checking serde_plain v1.0.2
[INFO] [stderr]     Checking toktrie v1.4.0
[INFO] [stderr]     Checking num_enum v0.7.5
[INFO] [stderr]     Checking referencing v0.29.1
[INFO] [stderr]     Checking compact_str v0.9.0
[INFO] [stderr]     Checking candle-core v0.9.2-alpha.2 (https://github.com/huggingface/candle#049c06da)
[INFO] [stderr]     Checking dary_heap v0.3.8
[INFO] [stderr]     Checking safetensors v0.5.3
[INFO] [stderr]     Checking ciborium-ll v0.2.2
[INFO] [stderr]    Compiling async-trait v0.1.89
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]     Checking ciborium v0.2.2
[INFO] [stderr]     Checking tokio v1.48.0
[INFO] [stderr]     Checking tinytemplate v1.2.1
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking candle-nn v0.9.2-alpha.2 (https://github.com/huggingface/candle#049c06da)
[INFO] [stderr]     Checking proptest v1.9.0
[INFO] [stderr]     Checking candle-transformers v0.9.2-alpha.2 (https://github.com/huggingface/candle#049c06da)
[INFO] [stderr]    Compiling derive_builder_macro v0.20.2
[INFO] [stderr]     Checking tracing-subscriber v0.3.22
[INFO] [stderr]     Checking derive_builder v0.20.2
[INFO] [stderr]     Checking tokenizers v0.21.4
[INFO] [stderr]     Checking strum v0.27.2
[INFO] [stderr]     Checking derivre v0.3.8
[INFO] [stderr]     Checking clap v4.5.53
[INFO] [stderr]     Checking criterion v0.5.1
[INFO] [stderr]     Checking rstest v0.23.0
[INFO] [stderr]     Checking dendrite-core v0.1.0 (/opt/rustwide/workdir/crates/dendrite-core)
[INFO] [stderr]     Checking dendrite v0.1.0 (/opt/rustwide/workdir/crates/dendrite)
[INFO] [stderr]     Finished `dev` profile [optimized + debuginfo] target(s) in 13m 38s
[INFO] running `Command { std: "docker" "inspect" "7a2c7caa6a3ee665390b3d666b24065134bc2958879b24116d56c521f8b35f48", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7a2c7caa6a3ee665390b3d666b24065134bc2958879b24116d56c521f8b35f48", kill_on_drop: false }`
[INFO] [stdout] 7a2c7caa6a3ee665390b3d666b24065134bc2958879b24116d56c521f8b35f48
