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[INFO] validating manifest of git repo https://github.com/bluegems661/nmraster2 on toolchain d0ab665d12770dbaae620b539ee4319b83445f45
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[INFO] [stdout] warning: unused import: `super::cluster::SpinSystemCluster`
[INFO] [stdout]    --> crates/nmraster-inference/src/peak_graph/affinity.rs:717:9
[INFO] [stdout]     |
[INFO] [stdout] 717 |     use super::cluster::SpinSystemCluster;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `compute_max_message_change`
[INFO] [stdout]   --> crates/nmraster-inference/src/bp/engine.rs:10:26
[INFO] [stdout]    |
[INFO] [stdout] 10 | use super::convergence::{compute_max_message_change, ConvergenceChecker};
[INFO] [stdout]    |                          ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `ToleranceSet`
[INFO] [stdout]  --> crates/nmraster-inference/src/annealing/annealed_assignment.rs:9:59
[INFO] [stdout]   |
[INFO] [stdout] 9 | use crate::peak_graph::affinity::{apply_soft_memberships, ToleranceSet};
[INFO] [stdout]   |                                                           ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `nmraster_experiments::ResidueOffset`
[INFO] [stdout]    --> crates/nmraster-inference/src/annealing/annealed_assignment.rs:417:13
[INFO] [stdout]     |
[INFO] [stdout] 417 |         use nmraster_experiments::ResidueOffset;
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `super::cluster::SpinSystemCluster`
[INFO] [stdout]    --> crates/nmraster-inference/src/peak_graph/affinity.rs:717:9
[INFO] [stdout]     |
[INFO] [stdout] 717 |     use super::cluster::SpinSystemCluster;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `compute_max_message_change`
[INFO] [stdout]   --> crates/nmraster-inference/src/bp/engine.rs:10:26
[INFO] [stdout]    |
[INFO] [stdout] 10 | use super::convergence::{compute_max_message_change, ConvergenceChecker};
[INFO] [stdout]    |                          ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::factor_graph::types::Variable`
[INFO] [stdout]    --> crates/nmraster-inference/src/bp/factor_to_variable.rs:333:9
[INFO] [stdout]     |
[INFO] [stdout] 333 |     use crate::factor_graph::types::Variable;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `ToleranceSet`
[INFO] [stdout]  --> crates/nmraster-inference/src/annealing/annealed_assignment.rs:9:59
[INFO] [stdout]   |
[INFO] [stdout] 9 | use crate::peak_graph::affinity::{apply_soft_memberships, ToleranceSet};
[INFO] [stdout]   |                                                           ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `nmraster_experiments::ResidueOffset`
[INFO] [stdout]    --> crates/nmraster-inference/src/annealing/annealed_assignment.rs:417:13
[INFO] [stdout]     |
[INFO] [stdout] 417 |         use nmraster_experiments::ResidueOffset;
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `shift_value`
[INFO] [stdout]    --> crates/nmraster-inference/src/peak_graph/builder.rs:478:5
[INFO] [stdout]     |
[INFO] [stdout] 478 |     shift_value: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_shift_value`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `carbons_are_compatible` is never used
[INFO] [stdout]     --> crates/nmraster-inference/src/peak_graph/affinity.rs:1081:4
[INFO] [stdout]      |
[INFO] [stdout] 1081 | fn carbons_are_compatible(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_atom_names_for_dimension` is never used
[INFO] [stdout]    --> crates/nmraster-inference/src/peak_graph/builder.rs:457:4
[INFO] [stdout]     |
[INFO] [stdout] 457 | fn get_atom_names_for_dimension(dim_def: &nmraster_experiments::DimensionDescriptor) -> Vec<AtomName> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking nmraster-cli v0.1.0 (/opt/rustwide/workdir/crates/nmraster-cli)
[INFO] [stdout] warning: unused variable: `shift_value`
[INFO] [stdout]    --> crates/nmraster-inference/src/peak_graph/builder.rs:478:5
[INFO] [stdout]     |
[INFO] [stdout] 478 |     shift_value: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_shift_value`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `n_aligned`
[INFO] [stdout]    --> crates/nmraster-cli/../../scripts/train_kde_models.rs:226:13
[INFO] [stdout]     |
[INFO] [stdout] 226 |         let n_aligned = complete_shifts.values().next().map(|v| v.len()).unwrap_or(0);
[INFO] [stdout]     |             ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_aligned`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `raw_prob`
[INFO] [stdout]    --> crates/nmraster-cli/../../scripts/test_spin_system_typing.rs:275:14
[INFO] [stdout]     |
[INFO] [stdout] 275 |     for (aa, raw_prob, norm_prob, n_atoms) in &normalized {
[INFO] [stdout]     |              ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_raw_prob`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `n_aligned`
[INFO] [stdout]    --> crates/nmraster-cli/../../scripts/train_kde_models.rs:226:13
[INFO] [stdout]     |
[INFO] [stdout] 226 |         let n_aligned = complete_shifts.values().next().map(|v| v.len()).unwrap_or(0);
[INFO] [stdout]     |             ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_aligned`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `carbons_are_compatible` is never used
[INFO] [stdout]     --> crates/nmraster-inference/src/peak_graph/affinity.rs:1081:4
[INFO] [stdout]      |
[INFO] [stdout] 1081 | fn carbons_are_compatible(
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_atom_names_for_dimension` is never used
[INFO] [stdout]    --> crates/nmraster-inference/src/peak_graph/builder.rs:457:4
[INFO] [stdout]     |
[INFO] [stdout] 457 | fn get_atom_names_for_dimension(dim_def: &nmraster_experiments::DimensionDescriptor) -> Vec<AtomName> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `raw_prob`
[INFO] [stdout]    --> crates/nmraster-cli/../../scripts/test_spin_system_typing.rs:275:14
[INFO] [stdout]     |
[INFO] [stdout] 275 |     for (aa, raw_prob, norm_prob, n_atoms) in &normalized {
[INFO] [stdout]     |              ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_raw_prob`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `nmraster_inference::peak_graph::PeakGraph`
[INFO] [stdout]   --> crates/nmraster-cli/src/commands/assign.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use nmraster_inference::peak_graph::PeakGraph;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `nmraster_inference::peak_graph::PeakGraph`
[INFO] [stdout]   --> crates/nmraster-cli/src/commands/assign.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use nmraster_inference::peak_graph::PeakGraph;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `compute_sequence_counts` is never used
[INFO] [stdout]    --> crates/nmraster-cli/src/commands/assign.rs:361:4
[INFO] [stdout]     |
[INFO] [stdout] 361 | fn compute_sequence_counts(sequence: &str) -> CliResult<HashMap<AminoAcid, usize>> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_minimal_experiments` is never used
[INFO] [stdout]    --> crates/nmraster-cli/src/commands/assign.rs:407:4
[INFO] [stdout]     |
[INFO] [stdout] 407 | fn create_minimal_experiments(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `BmrbShift` is never constructed
[INFO] [stdout]   --> crates/nmraster-cli/src/commands/fetch_bmrb.rs:38:8
[INFO] [stdout]    |
[INFO] [stdout] 38 | struct BmrbShift {
[INFO] [stdout]    |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `BmrbResponse` is never constructed
[INFO] [stdout]   --> crates/nmraster-cli/src/commands/fetch_bmrb.rs:56:8
[INFO] [stdout]    |
[INFO] [stdout] 56 | struct BmrbResponse {
[INFO] [stdout]    |        ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `compute_sequence_counts` is never used
[INFO] [stdout]    --> crates/nmraster-cli/src/commands/assign.rs:361:4
[INFO] [stdout]     |
[INFO] [stdout] 361 | fn compute_sequence_counts(sequence: &str) -> CliResult<HashMap<AminoAcid, usize>> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_minimal_experiments` is never used
[INFO] [stdout]    --> crates/nmraster-cli/src/commands/assign.rs:407:4
[INFO] [stdout]     |
[INFO] [stdout] 407 | fn create_minimal_experiments(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `BmrbShift` is never constructed
[INFO] [stdout]   --> crates/nmraster-cli/src/commands/fetch_bmrb.rs:38:8
[INFO] [stdout]    |
[INFO] [stdout] 38 | struct BmrbShift {
[INFO] [stdout]    |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `BmrbResponse` is never constructed
[INFO] [stdout]   --> crates/nmraster-cli/src/commands/fetch_bmrb.rs:56:8
[INFO] [stdout]    |
[INFO] [stdout] 56 | struct BmrbResponse {
[INFO] [stdout]    |        ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 51.80s
[INFO] running `Command { std: "docker" "inspect" "28af844898d70fdf43cbb46f3e5ea89b31591df878b8963bcd3954986915d4e1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "28af844898d70fdf43cbb46f3e5ea89b31591df878b8963bcd3954986915d4e1", kill_on_drop: false }`
[INFO] [stdout] 28af844898d70fdf43cbb46f3e5ea89b31591df878b8963bcd3954986915d4e1
