[INFO] cloning repository https://github.com/COMBINE-lab/piscem
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/COMBINE-lab/piscem" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f9c6f44b42ea6fe71557d005c01cf3feb7c1dfa0
[INFO] checking COMBINE-lab/piscem against 656ccbe796ff98def9b555c118e1620c5389e3b2 for pr-133502-25
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-1-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/COMBINE-lab/piscem
[INFO] finished tweaking git repo https://github.com/COMBINE-lab/piscem
[INFO] tweaked toml for git repo https://github.com/COMBINE-lab/piscem written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/COMBINE-lab/piscem on toolchain 656ccbe796ff98def9b555c118e1620c5389e3b2
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+656ccbe796ff98def9b555c118e1620c5389e3b2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/COMBINE-lab/piscem already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+656ccbe796ff98def9b555c118e1620c5389e3b2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] d268e8fb2bea97bc913b776a5230ac1561f9bbe70cfcfcaa16ed21c96c35d2a6
[INFO] running `Command { std: "docker" "start" "d268e8fb2bea97bc913b776a5230ac1561f9bbe70cfcfcaa16ed21c96c35d2a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d268e8fb2bea97bc913b776a5230ac1561f9bbe70cfcfcaa16ed21c96c35d2a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "d268e8fb2bea97bc913b776a5230ac1561f9bbe70cfcfcaa16ed21c96c35d2a6" "/opt/rustwide/cargo-home/bin/cargo" "+656ccbe796ff98def9b555c118e1620c5389e3b2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d268e8fb2bea97bc913b776a5230ac1561f9bbe70cfcfcaa16ed21c96c35d2a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "d268e8fb2bea97bc913b776a5230ac1561f9bbe70cfcfcaa16ed21c96c35d2a6" "/opt/rustwide/cargo-home/bin/cargo" "+656ccbe796ff98def9b555c118e1620c5389e3b2" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
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[INFO] [stderr]    Compiling toml_edit v0.22.27
[INFO] [stderr]     Checking dashmap v6.1.0
[INFO] [stderr]    Compiling zerocopy-derive v0.8.48
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling bytemuck_derive v1.10.2
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling enum-as-inner v0.6.1
[INFO] [stderr]    Compiling mem_dbg-derive v0.3.1
[INFO] [stderr]    Compiling tracing-attributes v0.1.31
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling mem_dbg-derive v0.2.1
[INFO] [stderr]    Compiling sealed v0.6.0
[INFO] [stderr]    Compiling epserde-derive v0.12.5
[INFO] [stderr]    Compiling lender-derive v0.1.3
[INFO] [stderr]    Compiling value-traits-derive v0.2.1
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking bytemuck v1.25.0
[INFO] [stderr]     Checking sysctl v0.6.0
[INFO] [stderr]     Checking value-traits v0.2.1
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking tracing v0.1.44
[INFO] [stderr]     Checking succinctly v0.6.0
[INFO] [stderr]     Checking mmap-rs v0.7.0
[INFO] [stderr]     Checking lender v0.6.2
[INFO] [stderr]     Checking mem_dbg v0.3.4
[INFO] [stderr]    Compiling impl-tools v0.11.4
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling darling_macro v0.21.3
[INFO] [stderr]    Compiling darling v0.21.3
[INFO] [stderr]     Checking mem_dbg v0.4.1
[INFO] [stderr]    Compiling ambassador v0.5.1
[INFO] [stderr]    Compiling derive_setters v0.1.9
[INFO] [stderr]     Checking bgzip v0.3.1
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]     Checking clap v4.6.1
[INFO] [stderr]     Checking tracing-subscriber v0.3.23
[INFO] [stderr]    Compiling darling_macro v0.23.0
[INFO] [stderr]     Checking liblzma v0.3.6
[INFO] [stderr]    Compiling toml v0.8.23
[INFO] [stderr]    Compiling darling v0.23.0
[INFO] [stderr]     Checking epserde v0.12.6
[INFO] [stderr]    Compiling bon-macros v3.9.1
[INFO] [stderr]    Compiling piscem v0.21.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking needletail v0.6.3
[INFO] [stderr]     Checking niffler v3.0.0
[INFO] [stderr]     Checking prepare_fasta v0.2.0
[INFO] [stderr]     Checking paraseq v0.4.10
[INFO] [stderr]     Checking seq_geom_parser v1.1.0
[INFO] [stderr]     Checking bon v3.9.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking sux v0.14.0
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking rand v0.9.4
[INFO] [stderr]     Checking packed-seq v4.4.2
[INFO] [stderr]     Checking seq-hash v0.1.2
[INFO] [stderr]     Checking simd-minimizers v2.3.1
[INFO] [stderr]     Checking cf1-rs v0.5.0
[INFO] [stderr]     Checking sshash-lib v0.6.1
[INFO] [stderr]     Checking tiny-dict v0.6.0
[INFO] [stderr]     Checking piscem-rs v0.6.3
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 50s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nix v0.30.1, proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "d268e8fb2bea97bc913b776a5230ac1561f9bbe70cfcfcaa16ed21c96c35d2a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d268e8fb2bea97bc913b776a5230ac1561f9bbe70cfcfcaa16ed21c96c35d2a6", kill_on_drop: false }`
[INFO] [stdout] d268e8fb2bea97bc913b776a5230ac1561f9bbe70cfcfcaa16ed21c96c35d2a6