[INFO] cloning repository https://github.com/koisland/rs-cdr-finder
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/koisland/rs-cdr-finder" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-cdr-finder", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-cdr-finder'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7e8b41ddf07f0c03dcc230ef6978935e952f6485
[INFO] checking koisland/rs-cdr-finder against master#656ccbe796ff98def9b555c118e1620c5389e3b2 for pr-133502-24
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-cdr-finder" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/koisland/rs-cdr-finder
[INFO] finished tweaking git repo https://github.com/koisland/rs-cdr-finder
[INFO] tweaked toml for git repo https://github.com/koisland/rs-cdr-finder written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/koisland/rs-cdr-finder on toolchain 656ccbe796ff98def9b555c118e1620c5389e3b2
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+656ccbe796ff98def9b555c118e1620c5389e3b2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/koisland/rs-cdr-finder already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+656ccbe796ff98def9b555c118e1620c5389e3b2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/nanoporetech/modkit.git`
[INFO] [stderr]     Updating git repository `https://github.com/logsdon-lab/rs-moddotplot.git`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "bdb4725d2bd30497727b617cebaf2db98bfb9c7baf9bc7a2d2cd1c96811951aa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "bdb4725d2bd30497727b617cebaf2db98bfb9c7baf9bc7a2d2cd1c96811951aa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "bdb4725d2bd30497727b617cebaf2db98bfb9c7baf9bc7a2d2cd1c96811951aa" "/opt/rustwide/cargo-home/bin/cargo" "+656ccbe796ff98def9b555c118e1620c5389e3b2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "bdb4725d2bd30497727b617cebaf2db98bfb9c7baf9bc7a2d2cd1c96811951aa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "bdb4725d2bd30497727b617cebaf2db98bfb9c7baf9bc7a2d2cd1c96811951aa" "/opt/rustwide/cargo-home/bin/cargo" "+656ccbe796ff98def9b555c118e1620c5389e3b2" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
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[INFO] [stderr]     Checking rs-moddotplot v0.1.0 (https://github.com/logsdon-lab/rs-moddotplot.git?rev=e6439eaf7eeeba8702c12e0e4347c2127974d5f6#e6439eaf)
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking find_peaks v0.1.5
[INFO] [stderr]     Checking sct v0.7.1
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[INFO] [stderr]     Checking rv v0.16.0
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking plotters v0.3.7
[INFO] [stderr]     Checking attohttpc v0.25.0
[INFO] [stderr]     Checking bigtools v0.5.6
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking rust-htslib v0.46.0
[INFO] [stderr]     Checking mod_kit v0.5.0 (https://github.com/nanoporetech/modkit.git?tag=v0.5.0#5120ef76)
[INFO] [stderr]     Checking rs-cdr-finder v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `MinMaxResult`
[INFO] [stdout]  --> src/peaks.rs:1:28
[INFO] [stdout]   |
[INFO] [stdout] 1 | use itertools::{Itertools, MinMaxResult};
[INFO] [stdout]   |                            ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `plot::Label`
[INFO] [stdout]  --> src/peaks.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 |     plot::Label,
[INFO] [stdout]   |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: trailing semicolon in macro used in expression position
[INFO] [stdout]   --> src/io.rs:60:13
[INFO] [stdout]    |
[INFO] [stdout] 60 |             bail!("Invalid formatted line: {line}")
[INFO] [stdout]    |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: macro invocations at the end of a block are treated as expressions
[INFO] [stdout]    = note: to ignore the value produced by the macro, add a semicolon after the invocation of `bail`
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]    = note: for more information, see issue #79813 <https://github.com/rust-lang/rust/issues/79813>
[INFO] [stdout]    = note: `#[deny(semicolon_in_expressions_from_macros)]` (part of `#[deny(future_incompatible)]`) on by default
[INFO] [stdout]    = note: this error originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: trailing semicolon in macro used in expression position
[INFO] [stdout]    --> src/io.rs:105:13
[INFO] [stdout]     |
[INFO] [stdout] 105 |             bail!("No intervals for {chrom}")
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: macro invocations at the end of a block are treated as expressions
[INFO] [stdout]     = note: to ignore the value produced by the macro, add a semicolon after the invocation of `bail`
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]     = note: for more information, see issue #79813 <https://github.com/rust-lang/rust/issues/79813>
[INFO] [stdout]     = note: this error originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: trailing semicolon in macro used in expression position
[INFO] [stdout]    --> src/io.rs:164:18
[INFO] [stdout]     |
[INFO] [stdout] 164 |             _ => bail!("Invalid BED format for {line}"),
[INFO] [stdout]     |                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]     = note: for more information, see issue #79813 <https://github.com/rust-lang/rust/issues/79813>
[INFO] [stdout]     = note: this error originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: trailing semicolon in macro used in expression position
[INFO] [stdout]    --> src/plot.rs:122:17
[INFO] [stdout]     |
[INFO] [stdout] 122 |                 bail!("Expected 3 RGB channels for {}", itv.val.color)
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: macro invocations at the end of a block are treated as expressions
[INFO] [stdout]     = note: to ignore the value produced by the macro, add a semicolon after the invocation of `bail`
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]     = note: for more information, see issue #79813 <https://github.com/rust-lang/rust/issues/79813>
[INFO] [stdout]     = note: this error originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `MinMaxResult`
[INFO] [stdout]  --> src/peaks.rs:1:28
[INFO] [stdout]   |
[INFO] [stdout] 1 | use itertools::{Itertools, MinMaxResult};
[INFO] [stdout]   |                            ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `plot::Label`
[INFO] [stdout]  --> src/peaks.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 |     plot::Label,
[INFO] [stdout]   |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: trailing semicolon in macro used in expression position
[INFO] [stdout]   --> src/io.rs:60:13
[INFO] [stdout]    |
[INFO] [stdout] 60 |             bail!("Invalid formatted line: {line}")
[INFO] [stdout]    |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: macro invocations at the end of a block are treated as expressions
[INFO] [stdout]    = note: to ignore the value produced by the macro, add a semicolon after the invocation of `bail`
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]    = note: for more information, see issue #79813 <https://github.com/rust-lang/rust/issues/79813>
[INFO] [stdout]    = note: `#[deny(semicolon_in_expressions_from_macros)]` (part of `#[deny(future_incompatible)]`) on by default
[INFO] [stdout]    = note: this error originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: trailing semicolon in macro used in expression position
[INFO] [stdout]    --> src/io.rs:105:13
[INFO] [stdout]     |
[INFO] [stdout] 105 |             bail!("No intervals for {chrom}")
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: macro invocations at the end of a block are treated as expressions
[INFO] [stdout]     = note: to ignore the value produced by the macro, add a semicolon after the invocation of `bail`
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]     = note: for more information, see issue #79813 <https://github.com/rust-lang/rust/issues/79813>
[INFO] [stdout]     = note: this error originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: trailing semicolon in macro used in expression position
[INFO] [stdout]    --> src/io.rs:164:18
[INFO] [stdout]     |
[INFO] [stdout] 164 |             _ => bail!("Invalid BED format for {line}"),
[INFO] [stdout]     |                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]     = note: for more information, see issue #79813 <https://github.com/rust-lang/rust/issues/79813>
[INFO] [stdout]     = note: this error originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: trailing semicolon in macro used in expression position
[INFO] [stdout]    --> src/plot.rs:122:17
[INFO] [stdout]     |
[INFO] [stdout] 122 |                 bail!("Expected 3 RGB channels for {}", itv.val.color)
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: macro invocations at the end of a block are treated as expressions
[INFO] [stdout]     = note: to ignore the value produced by the macro, add a semicolon after the invocation of `bail`
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]     = note: for more information, see issue #79813 <https://github.com/rust-lang/rust/issues/79813>
[INFO] [stdout]     = note: this error originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seed`
[INFO] [stdout]   --> src/peaks.rs:40:67
[INFO] [stdout]    |
[INFO] [stdout] 40 | pub fn find_peaks(qitv: Interval<u64, &str>, itvs: &ChromBinItvs, seed: u64) -> eyre::Result<()> {
[INFO] [stdout]    |                                                                   ^^^^ help: if this is intentional, prefix it with an underscore: `_seed`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seed`
[INFO] [stdout]   --> src/peaks.rs:40:67
[INFO] [stdout]    |
[INFO] [stdout] 40 | pub fn find_peaks(qitv: Interval<u64, &str>, itvs: &ChromBinItvs, seed: u64) -> eyre::Result<()> {
[INFO] [stdout]    |                                                                   ^^^^ help: if this is intentional, prefix it with an underscore: `_seed`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `peaks`
[INFO] [stdout]   --> src/main.rs:76:21
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 let peaks = find_peaks(
[INFO] [stdout]    |                     ^^^^^ help: if this is intentional, prefix it with an underscore: `_peaks`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `mean` is never used
[INFO] [stdout]   --> src/peaks.rs:11:4
[INFO] [stdout]    |
[INFO] [stdout] 11 | fn mean(data: &[OrderedFloat<f32>]) -> Option<OrderedFloat<f32>> {
[INFO] [stdout]    |    ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `std_deviation` is never used
[INFO] [stdout]   --> src/peaks.rs:21:4
[INFO] [stdout]    |
[INFO] [stdout] 21 | fn std_deviation(data: &[OrderedFloat<f32>]) -> Option<(OrderedFloat<f32>, OrderedFloat<f32>)> {
[INFO] [stdout]    |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `peaks`
[INFO] [stdout]   --> src/main.rs:76:21
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 let peaks = find_peaks(
[INFO] [stdout]    |                     ^^^^^ help: if this is intentional, prefix it with an underscore: `_peaks`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `mean` is never used
[INFO] [stdout]   --> src/peaks.rs:11:4
[INFO] [stdout]    |
[INFO] [stdout] 11 | fn mean(data: &[OrderedFloat<f32>]) -> Option<OrderedFloat<f32>> {
[INFO] [stdout]    |    ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `std_deviation` is never used
[INFO] [stdout]   --> src/peaks.rs:21:4
[INFO] [stdout]    |
[INFO] [stdout] 21 | fn std_deviation(data: &[OrderedFloat<f32>]) -> Option<(OrderedFloat<f32>, OrderedFloat<f32>)> {
[INFO] [stdout]    |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `rs-cdr-finder` (bin "rs-cdr-finder" test) due to 8 previous errors; 6 warnings emitted
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `rs-cdr-finder` (bin "rs-cdr-finder") due to 8 previous errors; 6 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "bdb4725d2bd30497727b617cebaf2db98bfb9c7baf9bc7a2d2cd1c96811951aa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bdb4725d2bd30497727b617cebaf2db98bfb9c7baf9bc7a2d2cd1c96811951aa", kill_on_drop: false }`
[INFO] [stdout] bdb4725d2bd30497727b617cebaf2db98bfb9c7baf9bc7a2d2cd1c96811951aa
