[INFO] cloning repository https://github.com/huiN95/barcode_demux
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/huiN95/barcode_demux" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FhuiN95%2Fbarcode_demux", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FhuiN95%2Fbarcode_demux'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ebc2cc985531610ce84a7658f88a203b3a87a319
[INFO] checking huiN95/barcode_demux against master#c290daa1e5274a52e54a0f49e31bd70192abc606 for pr-133502-23
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FhuiN95%2Fbarcode_demux" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/huiN95/barcode_demux
[INFO] finished tweaking git repo https://github.com/huiN95/barcode_demux
[INFO] tweaked toml for git repo https://github.com/huiN95/barcode_demux written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/huiN95/barcode_demux on toolchain c290daa1e5274a52e54a0f49e31bd70192abc606
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c290daa1e5274a52e54a0f49e31bd70192abc606" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/huiN95/barcode_demux already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c290daa1e5274a52e54a0f49e31bd70192abc606" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "02edb4e6894804f620c6e37bf20ea42215c27624979d3c73fd0476c37400a968" "/opt/rustwide/cargo-home/bin/cargo" "+c290daa1e5274a52e54a0f49e31bd70192abc606" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "02edb4e6894804f620c6e37bf20ea42215c27624979d3c73fd0476c37400a968", kill_on_drop: false }`
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[INFO] [stderr]     Checking barcode_demux v1.0.7 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]  --> src/barcode_demuxer_v1.rs:8:30
[INFO] [stdout]   |
[INFO] [stdout] 8 | use metrics::{self, counter, histogram};
[INFO] [stdout]   |                              ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v1.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio::alignment::distance`
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:26:5
[INFO] [stdout]    |
[INFO] [stdout] 26 | use bio::alignment::distance;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:27:30
[INFO] [stdout]    |
[INFO] [stdout] 27 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v3.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio::alignment::distance`
[INFO] [stdout]   --> src/demux_pipeline_v3.rs:27:5
[INFO] [stdout]    |
[INFO] [stdout] 27 | use bio::alignment::distance;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]   --> src/demux_pipeline_v3.rs:28:30
[INFO] [stdout]    |
[INFO] [stdout] 28 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Direction` and `get_myers_from_barcodes`
[INFO] [stdout]  --> src/demux_pipeline_v4.rs:3:29
[INFO] [stdout]   |
[INFO] [stdout] 3 | use crate::barcode_mysers::{Direction, get_myers_from_barcodes};
[INFO] [stdout]   |                             ^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::core_context::BarcodeCandidate`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use crate::core_context::BarcodeCandidate;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::sync::Arc`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | use std::sync::Arc;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `MayersPattern` and `barcode_alignment`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:24:29
[INFO] [stdout]    |
[INFO] [stdout] 24 | use crate::barcode_mysers::{MayersPattern, barcode_alignment};
[INFO] [stdout]    |                             ^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio::alignment::distance`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:26:5
[INFO] [stdout]    |
[INFO] [stdout] 26 | use bio::alignment::distance;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:27:30
[INFO] [stdout]    |
[INFO] [stdout] 27 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:34:5
[INFO] [stdout]    |
[INFO] [stdout] 34 | use std::collections::HashMap;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]  --> src/get_demuxed_reads.rs:6:24
[INFO] [stdout]   |
[INFO] [stdout] 6 | use metrics::{counter, histogram};
[INFO] [stdout]   |                        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `BufRead`
[INFO] [stdout]   --> src/io_utils.rs:13:21
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::io::{self, BufRead, BufReader};
[INFO] [stdout]    |                     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `BufWriter`
[INFO] [stdout]   --> src/io_utils.rs:14:15
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::io::{BufWriter, Write};
[INFO] [stdout]    |               ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `serde::Serialize`
[INFO] [stdout]   --> src/io_utils.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use serde::Serialize;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::demux_pipeline_v2::demux_pipeline_v2`
[INFO] [stdout]   --> src/main.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | use crate::demux_pipeline_v2::demux_pipeline_v2;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]  --> src/barcode_demuxer_v1.rs:8:30
[INFO] [stdout]   |
[INFO] [stdout] 8 | use metrics::{self, counter, histogram};
[INFO] [stdout]   |                              ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v1.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio::alignment::distance`
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:26:5
[INFO] [stdout]    |
[INFO] [stdout] 26 | use bio::alignment::distance;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:27:30
[INFO] [stdout]    |
[INFO] [stdout] 27 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v3.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio::alignment::distance`
[INFO] [stdout]   --> src/demux_pipeline_v3.rs:27:5
[INFO] [stdout]    |
[INFO] [stdout] 27 | use bio::alignment::distance;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]   --> src/demux_pipeline_v3.rs:28:30
[INFO] [stdout]    |
[INFO] [stdout] 28 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Direction` and `get_myers_from_barcodes`
[INFO] [stdout]  --> src/demux_pipeline_v4.rs:3:29
[INFO] [stdout]   |
[INFO] [stdout] 3 | use crate::barcode_mysers::{Direction, get_myers_from_barcodes};
[INFO] [stdout]   |                             ^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::core_context::BarcodeCandidate`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use crate::core_context::BarcodeCandidate;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::sync::Arc`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | use std::sync::Arc;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `MayersPattern` and `barcode_alignment`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:24:29
[INFO] [stdout]    |
[INFO] [stdout] 24 | use crate::barcode_mysers::{MayersPattern, barcode_alignment};
[INFO] [stdout]    |                             ^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio::alignment::distance`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:26:5
[INFO] [stdout]    |
[INFO] [stdout] 26 | use bio::alignment::distance;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:27:30
[INFO] [stdout]    |
[INFO] [stdout] 27 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:34:5
[INFO] [stdout]    |
[INFO] [stdout] 34 | use std::collections::HashMap;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]  --> src/get_demuxed_reads.rs:6:24
[INFO] [stdout]   |
[INFO] [stdout] 6 | use metrics::{counter, histogram};
[INFO] [stdout]   |                        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `BufRead`
[INFO] [stdout]   --> src/io_utils.rs:13:21
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::io::{self, BufRead, BufReader};
[INFO] [stdout]    |                     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `BufWriter`
[INFO] [stdout]   --> src/io_utils.rs:14:15
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::io::{BufWriter, Write};
[INFO] [stdout]    |               ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `serde::Serialize`
[INFO] [stdout]   --> src/io_utils.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use serde::Serialize;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::demux_pipeline_v2::demux_pipeline_v2`
[INFO] [stdout]   --> src/main.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | use crate::demux_pipeline_v2::demux_pipeline_v2;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Write`
[INFO] [stdout]   --> src/io_utils.rs:14:26
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::io::{BufWriter, Write};
[INFO] [stdout]    |                          ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Write`
[INFO] [stdout]   --> src/io_utils.rs:14:26
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::io::{BufWriter, Write};
[INFO] [stdout]    |                          ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `max_distance`
[INFO] [stdout]    --> src/demux_pipeline_v4.rs:133:5
[INFO] [stdout]     |
[INFO] [stdout] 133 |     max_distance: u8,
[INFO] [stdout]     |     ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_max_distance`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `primer_id`
[INFO] [stdout]   --> src/get_demuxed_reads.rs:43:28
[INFO] [stdout]    |
[INFO] [stdout] 43 | fn make_name(rec_id: &str, primer_id: &str, s: usize, e: usize) -> String {
[INFO] [stdout]    |                            ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_primer_id`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `max_distance`
[INFO] [stdout]    --> src/demux_pipeline_v4.rs:133:5
[INFO] [stdout]     |
[INFO] [stdout] 133 |     max_distance: u8,
[INFO] [stdout]     |     ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_max_distance`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `primer_id`
[INFO] [stdout]   --> src/get_demuxed_reads.rs:43:28
[INFO] [stdout]    |
[INFO] [stdout] 43 | fn make_name(rec_id: &str, primer_id: &str, s: usize, e: usize) -> String {
[INFO] [stdout]    |                            ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_primer_id`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `nn` is never read
[INFO] [stdout]   --> src/bam_record_extention.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout]  5 | pub struct ReadRecord {
[INFO] [stdout]    |            ---------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 20 |     pub nn: Option<Vec<u8>>,
[INFO] [stdout]    |         ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `ReadRecord` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `u32` is never used
[INFO] [stdout]   --> src/bam_record_extention.rs:47:8
[INFO] [stdout]    |
[INFO] [stdout] 45 | pub trait AuxExt<'a> {
[INFO] [stdout]    |           ------ method in this trait
[INFO] [stdout] 46 |     fn i32(&self, tag: &[u8]) -> Option<i32>; // ch:i, cx:i …
[INFO] [stdout] 47 |     fn u32(&self, tag: &[u8]) -> Option<u32>; // np:i, cx:i …
[INFO] [stdout]    |        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `pattern` is never read
[INFO] [stdout]   --> src/barcode_mysers.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 15 |     MyersLong {
[INFO] [stdout]    |     --------- field in this variant
[INFO] [stdout] 16 |         myers: MyersLong<u8>,
[INFO] [stdout] 17 |         pattern: String,
[INFO] [stdout]    |         ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `pattern` is never used
[INFO] [stdout]   --> src/barcode_mysers.rs:23:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | impl MayersPattern {
[INFO] [stdout]    | ------------------ method in this implementation
[INFO] [stdout] 22 |     #[inline]
[INFO] [stdout] 23 |     pub fn pattern(&self) -> &str {
[INFO] [stdout]    |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `compl_iupac` is never used
[INFO] [stdout]    --> src/barcode_mysers.rs:130:4
[INFO] [stdout]     |
[INFO] [stdout] 130 | fn compl_iupac(b: u8) -> u8 {
[INFO] [stdout]     |    ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `revcomp_iupac` is never used
[INFO] [stdout]    --> src/barcode_mysers.rs:151:4
[INFO] [stdout]     |
[INFO] [stdout] 151 | fn revcomp_iupac(seq: &[u8]) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_two_directions_myers_from_barcodes` is never used
[INFO] [stdout]    --> src/barcode_mysers.rs:221:8
[INFO] [stdout]     |
[INFO] [stdout] 221 | pub fn get_two_directions_myers_from_barcodes(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `distance` is never read
[INFO] [stdout]   --> src/core_context.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub struct BarcodePair {
[INFO] [stdout]    |            ----------- field in this struct
[INFO] [stdout] 16 |     pub name: Arc<str>,
[INFO] [stdout] 17 |     pub distance: (i32, i32),
[INFO] [stdout]    |         ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `BarcodePair` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `demux_pipeline_v2` is never used
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:36:8
[INFO] [stdout]    |
[INFO] [stdout] 36 | pub fn demux_pipeline_v2(cli: &Cli) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `demux_reads_by_multiple_barcode` is never used
[INFO] [stdout]    --> src/demux_pipeline_v2.rs:130:8
[INFO] [stdout]     |
[INFO] [stdout] 130 | pub fn demux_reads_by_multiple_barcode(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `multiple_barcode_demuxer_v1` is never used
[INFO] [stdout]    --> src/demux_pipeline_v2.rs:179:8
[INFO] [stdout]     |
[INFO] [stdout] 179 | pub fn multiple_barcode_demuxer_v1(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]    --> src/demux_pipeline_v4.rs:224:9
[INFO] [stdout]     |
[INFO] [stdout] 223 | pub struct LocalAlignmentResult {
[INFO] [stdout]     |            -------------------- fields in this struct
[INFO] [stdout] 224 |     pub a_range: (usize, usize), // 左闭右开
[INFO] [stdout]     |         ^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 227 |     pub a_substring: String,
[INFO] [stdout]     |         ^^^^^^^^^^^
[INFO] [stdout] 228 |     pub b_substring: String,
[INFO] [stdout]     |         ^^^^^^^^^^^
[INFO] [stdout] 229 |
[INFO] [stdout] 230 |     pub aligned_a: String,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] 231 |     pub aligned_b: String,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] 232 |
[INFO] [stdout] 233 |     pub alignment_length: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^
[INFO] [stdout] 234 |     pub matches: usize,
[INFO] [stdout]     |         ^^^^^^^
[INFO] [stdout] 235 |     pub mismatches: usize,
[INFO] [stdout]     |         ^^^^^^^^^^
[INFO] [stdout] 236 |     pub gaps_in_a: usize,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] 237 |     pub gaps_in_b: usize,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 240 |     pub identity: f64,
[INFO] [stdout]     |         ^^^^^^^^
[INFO] [stdout] 241 |     pub score: f64,
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `LocalAlignmentResult` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `longest_similar_local_alignment_str` is never used
[INFO] [stdout]    --> src/demux_pipeline_v4.rs:606:8
[INFO] [stdout]     |
[INFO] [stdout] 606 | pub fn longest_similar_local_alignment_str(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `channel_q_from_fastq_ascii` is never used
[INFO] [stdout]    --> src/get_demuxed_reads.rs:427:8
[INFO] [stdout]     |
[INFO] [stdout] 427 | pub fn channel_q_from_fastq_ascii(q_ascii: &[u8]) -> Result<f32> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_demuxed_mixed_reads` is never used
[INFO] [stdout]    --> src/get_demuxed_reads.rs:461:4
[INFO] [stdout]     |
[INFO] [stdout] 461 | fn get_demuxed_mixed_reads(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `write_prepared_record` and `finish` are never used
[INFO] [stdout]    --> src/io_utils.rs:136:8
[INFO] [stdout]     |
[INFO] [stdout] 135 | pub trait ReadWriter {
[INFO] [stdout]     |           ---------- methods in this trait
[INFO] [stdout] 136 |     fn write_prepared_record(&mut self, record: &[RecordType]) -> io::Result<()>;
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 141 |     fn finish(&mut self) -> io::Result<()> {
[INFO] [stdout]     |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `reverse_complement` is never used
[INFO] [stdout]    --> src/io_utils.rs:426:4
[INFO] [stdout]     |
[INFO] [stdout] 426 | fn reverse_complement(seq: &[u8]) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `complement` is never used
[INFO] [stdout]    --> src/io_utils.rs:465:4
[INFO] [stdout]     |
[INFO] [stdout] 465 | fn complement(seq: &[u8]) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_bar_pb` is never used
[INFO] [stdout]  --> src/pbar.rs:7:8
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub fn get_bar_pb(message: String, interval: Duration, total: u64) -> ProgressBar {
[INFO] [stdout]   |        ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `phred_to_fastq_ascii` is never used
[INFO] [stdout]    --> src/reader_worker.rs:210:4
[INFO] [stdout]     |
[INFO] [stdout] 210 | fn phred_to_fastq_ascii(qual: &[u8]) -> Result<Vec<u8>> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `RG` should have a snake case name
[INFO] [stdout]   --> src/bam_record_extention.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 |     pub RG: Option<String>,
[INFO] [stdout]    |         ^^ help: convert the identifier to snake case: `rg`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `nn` is never read
[INFO] [stdout]   --> src/bam_record_extention.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout]  5 | pub struct ReadRecord {
[INFO] [stdout]    |            ---------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 20 |     pub nn: Option<Vec<u8>>,
[INFO] [stdout]    |         ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `ReadRecord` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `u32` is never used
[INFO] [stdout]   --> src/bam_record_extention.rs:47:8
[INFO] [stdout]    |
[INFO] [stdout] 45 | pub trait AuxExt<'a> {
[INFO] [stdout]    |           ------ method in this trait
[INFO] [stdout] 46 |     fn i32(&self, tag: &[u8]) -> Option<i32>; // ch:i, cx:i …
[INFO] [stdout] 47 |     fn u32(&self, tag: &[u8]) -> Option<u32>; // np:i, cx:i …
[INFO] [stdout]    |        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `pattern` is never read
[INFO] [stdout]   --> src/barcode_mysers.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 15 |     MyersLong {
[INFO] [stdout]    |     --------- field in this variant
[INFO] [stdout] 16 |         myers: MyersLong<u8>,
[INFO] [stdout] 17 |         pattern: String,
[INFO] [stdout]    |         ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `pattern` is never used
[INFO] [stdout]   --> src/barcode_mysers.rs:23:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | impl MayersPattern {
[INFO] [stdout]    | ------------------ method in this implementation
[INFO] [stdout] 22 |     #[inline]
[INFO] [stdout] 23 |     pub fn pattern(&self) -> &str {
[INFO] [stdout]    |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `compl_iupac` is never used
[INFO] [stdout]    --> src/barcode_mysers.rs:130:4
[INFO] [stdout]     |
[INFO] [stdout] 130 | fn compl_iupac(b: u8) -> u8 {
[INFO] [stdout]     |    ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `revcomp_iupac` is never used
[INFO] [stdout]    --> src/barcode_mysers.rs:151:4
[INFO] [stdout]     |
[INFO] [stdout] 151 | fn revcomp_iupac(seq: &[u8]) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_two_directions_myers_from_barcodes` is never used
[INFO] [stdout]    --> src/barcode_mysers.rs:221:8
[INFO] [stdout]     |
[INFO] [stdout] 221 | pub fn get_two_directions_myers_from_barcodes(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `distance` is never read
[INFO] [stdout]   --> src/core_context.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub struct BarcodePair {
[INFO] [stdout]    |            ----------- field in this struct
[INFO] [stdout] 16 |     pub name: Arc<str>,
[INFO] [stdout] 17 |     pub distance: (i32, i32),
[INFO] [stdout]    |         ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `BarcodePair` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `demux_pipeline_v2` is never used
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:36:8
[INFO] [stdout]    |
[INFO] [stdout] 36 | pub fn demux_pipeline_v2(cli: &Cli) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `demux_reads_by_multiple_barcode` is never used
[INFO] [stdout]    --> src/demux_pipeline_v2.rs:130:8
[INFO] [stdout]     |
[INFO] [stdout] 130 | pub fn demux_reads_by_multiple_barcode(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `multiple_barcode_demuxer_v1` is never used
[INFO] [stdout]    --> src/demux_pipeline_v2.rs:179:8
[INFO] [stdout]     |
[INFO] [stdout] 179 | pub fn multiple_barcode_demuxer_v1(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]    --> src/demux_pipeline_v4.rs:224:9
[INFO] [stdout]     |
[INFO] [stdout] 223 | pub struct LocalAlignmentResult {
[INFO] [stdout]     |            -------------------- fields in this struct
[INFO] [stdout] 224 |     pub a_range: (usize, usize), // 左闭右开
[INFO] [stdout]     |         ^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 227 |     pub a_substring: String,
[INFO] [stdout]     |         ^^^^^^^^^^^
[INFO] [stdout] 228 |     pub b_substring: String,
[INFO] [stdout]     |         ^^^^^^^^^^^
[INFO] [stdout] 229 |
[INFO] [stdout] 230 |     pub aligned_a: String,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] 231 |     pub aligned_b: String,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 235 |     pub mismatches: usize,
[INFO] [stdout]     |         ^^^^^^^^^^
[INFO] [stdout] 236 |     pub gaps_in_a: usize,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] 237 |     pub gaps_in_b: usize,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 241 |     pub score: f64,
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `LocalAlignmentResult` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `channel_q_from_fastq_ascii` is never used
[INFO] [stdout]    --> src/get_demuxed_reads.rs:427:8
[INFO] [stdout]     |
[INFO] [stdout] 427 | pub fn channel_q_from_fastq_ascii(q_ascii: &[u8]) -> Result<f32> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_demuxed_mixed_reads` is never used
[INFO] [stdout]    --> src/get_demuxed_reads.rs:461:4
[INFO] [stdout]     |
[INFO] [stdout] 461 | fn get_demuxed_mixed_reads(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `write_prepared_record` and `finish` are never used
[INFO] [stdout]    --> src/io_utils.rs:136:8
[INFO] [stdout]     |
[INFO] [stdout] 135 | pub trait ReadWriter {
[INFO] [stdout]     |           ---------- methods in this trait
[INFO] [stdout] 136 |     fn write_prepared_record(&mut self, record: &[RecordType]) -> io::Result<()>;
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 141 |     fn finish(&mut self) -> io::Result<()> {
[INFO] [stdout]     |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `reverse_complement` is never used
[INFO] [stdout]    --> src/io_utils.rs:426:4
[INFO] [stdout]     |
[INFO] [stdout] 426 | fn reverse_complement(seq: &[u8]) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `complement` is never used
[INFO] [stdout]    --> src/io_utils.rs:465:4
[INFO] [stdout]     |
[INFO] [stdout] 465 | fn complement(seq: &[u8]) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_bar_pb` is never used
[INFO] [stdout]  --> src/pbar.rs:7:8
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub fn get_bar_pb(message: String, interval: Duration, total: u64) -> ProgressBar {
[INFO] [stdout]   |        ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `phred_to_fastq_ascii` is never used
[INFO] [stdout]    --> src/reader_worker.rs:210:4
[INFO] [stdout]     |
[INFO] [stdout] 210 | fn phred_to_fastq_ascii(qual: &[u8]) -> Result<Vec<u8>> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `RG` should have a snake case name
[INFO] [stdout]   --> src/bam_record_extention.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 |     pub RG: Option<String>,
[INFO] [stdout]    |         ^^ help: convert the identifier to snake case: `rg`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 21s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "02edb4e6894804f620c6e37bf20ea42215c27624979d3c73fd0476c37400a968", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "02edb4e6894804f620c6e37bf20ea42215c27624979d3c73fd0476c37400a968", kill_on_drop: false }`
[INFO] [stdout] 02edb4e6894804f620c6e37bf20ea42215c27624979d3c73fd0476c37400a968
