[INFO] cloning repository https://github.com/cmdcolin/vcfverifier
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/cmdcolin/vcfverifier" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcmdcolin%2Fvcfverifier", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcmdcolin%2Fvcfverifier'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 5efec12c61c8d7cdac156253410a99ef49865e8f
[INFO] checking cmdcolin/vcfverifier against master#c290daa1e5274a52e54a0f49e31bd70192abc606 for pr-133502-23
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcmdcolin%2Fvcfverifier" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/cmdcolin/vcfverifier
[INFO] finished tweaking git repo https://github.com/cmdcolin/vcfverifier
[INFO] tweaked toml for git repo https://github.com/cmdcolin/vcfverifier written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/cmdcolin/vcfverifier on toolchain c290daa1e5274a52e54a0f49e31bd70192abc606
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c290daa1e5274a52e54a0f49e31bd70192abc606" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/cmdcolin/vcfverifier already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c290daa1e5274a52e54a0f49e31bd70192abc606" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded rust-htslib v1.0.0
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded cc v1.2.61
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded jobserver v0.1.34
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded memmap2 v0.9.10
[INFO] [stderr]   Downloaded strum_macros v0.26.4
[INFO] [stderr]   Downloaded openssl-sys v0.9.114
[INFO] [stderr]   Downloaded bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]   Downloaded lzma-sys v0.1.20
[INFO] [stderr]   Downloaded libz-sys v1.1.28
[INFO] [stderr]   Downloaded curl-sys v0.4.87+curl-8.19.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.6.0+3.6.2
[INFO] [stderr]   Downloaded faimm v0.5.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] c3062b9618db969f1db512fc565214ed0776f8ea5bab9e29847627fe25b2a303
[INFO] running `Command { std: "docker" "start" "c3062b9618db969f1db512fc565214ed0776f8ea5bab9e29847627fe25b2a303", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c3062b9618db969f1db512fc565214ed0776f8ea5bab9e29847627fe25b2a303", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c3062b9618db969f1db512fc565214ed0776f8ea5bab9e29847627fe25b2a303" "/opt/rustwide/cargo-home/bin/cargo" "+c290daa1e5274a52e54a0f49e31bd70192abc606" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c3062b9618db969f1db512fc565214ed0776f8ea5bab9e29847627fe25b2a303", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c3062b9618db969f1db512fc565214ed0776f8ea5bab9e29847627fe25b2a303" "/opt/rustwide/cargo-home/bin/cargo" "+c290daa1e5274a52e54a0f49e31bd70192abc606" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling unicode-ident v1.0.24
[INFO] [stderr]    Compiling quote v1.0.45
[INFO] [stderr]    Compiling libc v0.2.186
[INFO] [stderr]    Compiling pkg-config v0.3.33
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]     Checking litemap v0.8.2
[INFO] [stderr]     Checking writeable v0.6.3
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling icu_properties_data v2.2.0
[INFO] [stderr]    Compiling cfg-if v1.0.4
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]     Checking utf8_iter v1.0.4
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling icu_normalizer_data v2.2.0
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rustversion v1.0.22
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling cc v1.2.61
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling bitflags v2.11.1
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]     Checking anstyle-parse v1.0.0
[INFO] [stderr]    Compiling openssl-src v300.6.0+3.6.2
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking colorchoice v1.0.5
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking anstyle v1.0.14
[INFO] [stderr]    Compiling openssl-sys v0.9.114
[INFO] [stderr]    Compiling libz-sys v1.1.28
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling curl-sys v0.4.87+curl-8.19.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking anstream v1.0.0
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]     Checking clap_lex v1.1.0
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]     Checking adler2 v2.0.1
[INFO] [stderr]     Checking hashbrown v0.17.0
[INFO] [stderr]     Checking simd-adler32 v0.3.9
[INFO] [stderr]     Checking clap_builder v4.6.0
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking memmap2 v0.9.10
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking faimm v0.5.1
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]    Compiling zerofrom-derive v0.1.7
[INFO] [stderr]    Compiling yoke-derive v0.8.2
[INFO] [stderr]    Compiling zerovec-derive v0.11.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]     Checking zerofrom v0.1.7
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking yoke v0.8.2
[INFO] [stderr]     Checking zerovec v0.11.6
[INFO] [stderr]     Checking zerotrie v0.2.4
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking tinystr v0.8.3
[INFO] [stderr]     Checking icu_locale_core v2.2.0
[INFO] [stderr]     Checking potential_utf v0.1.5
[INFO] [stderr]     Checking icu_collections v2.2.0
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking icu_provider v2.2.0
[INFO] [stderr]     Checking icu_normalizer v2.2.0
[INFO] [stderr]     Checking icu_properties v2.2.0
[INFO] [stderr]     Checking clap v4.6.1
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking idna_adapter v1.2.2
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "c3062b9618db969f1db512fc565214ed0776f8ea5bab9e29847627fe25b2a303", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c3062b9618db969f1db512fc565214ed0776f8ea5bab9e29847627fe25b2a303", kill_on_drop: false }`
[INFO] [stdout] c3062b9618db969f1db512fc565214ed0776f8ea5bab9e29847627fe25b2a303
