[INFO] cloning repository https://github.com/femshima/htsengine-rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/femshima/htsengine-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffemshima%2Fhtsengine-rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffemshima%2Fhtsengine-rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 647406b76a3d0e53a52215b86297d29492d455b1 [INFO] checking femshima/htsengine-rs/647406b76a3d0e53a52215b86297d29492d455b1 against master#ff1737bb00913444173658b4e0b274fd79aabf66 for pr-132712-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffemshima%2Fhtsengine-rs" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/femshima/htsengine-rs on toolchain ff1737bb00913444173658b4e0b274fd79aabf66 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ff1737bb00913444173658b4e0b274fd79aabf66" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/femshima/htsengine-rs [INFO] finished tweaking git repo https://github.com/femshima/htsengine-rs [INFO] tweaked toml for git repo https://github.com/femshima/htsengine-rs written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/femshima/htsengine-rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ff1737bb00913444173658b4e0b274fd79aabf66" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded proc-macro2 v1.0.69 [INFO] [stderr] Downloaded thiserror-impl v1.0.49 [INFO] [stderr] Downloaded thiserror v1.0.49 [INFO] [stderr] Downloaded bindgen v0.68.1 [INFO] [stderr] Downloaded syn v2.0.38 [INFO] [stderr] Downloaded rustix v0.38.19 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+ff1737bb00913444173658b4e0b274fd79aabf66" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a47b8d589bb20cd12fb1c7f9f24df2395de8bcf32c186768f500790a0319abb4 [INFO] running `Command { std: "docker" "start" "-a" "a47b8d589bb20cd12fb1c7f9f24df2395de8bcf32c186768f500790a0319abb4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a47b8d589bb20cd12fb1c7f9f24df2395de8bcf32c186768f500790a0319abb4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a47b8d589bb20cd12fb1c7f9f24df2395de8bcf32c186768f500790a0319abb4", kill_on_drop: false }` [INFO] [stdout] a47b8d589bb20cd12fb1c7f9f24df2395de8bcf32c186768f500790a0319abb4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+ff1737bb00913444173658b4e0b274fd79aabf66" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 269e452ae0a794fc6a5381de624c424f8cbad1056a732ad3eeb4b6bb0b5500ed [INFO] running `Command { std: "docker" "start" "-a" "269e452ae0a794fc6a5381de624c424f8cbad1056a732ad3eeb4b6bb0b5500ed", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.69 [INFO] [stderr] Compiling libc v0.2.149 [INFO] [stderr] Compiling prettyplease v0.2.15 [INFO] [stderr] Compiling rustix v0.38.19 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling linux-raw-sys v0.4.10 [INFO] [stderr] Compiling memchr v2.6.4 [INFO] [stderr] Compiling either v1.9.0 [INFO] [stderr] Compiling home v0.5.5 [INFO] [stderr] Compiling bindgen v0.68.1 [INFO] [stderr] Compiling shlex v1.2.0 [INFO] [stderr] Compiling thiserror v1.0.49 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling clang-sys v1.6.1 [INFO] [stderr] Compiling cc v1.0.83 [INFO] [stderr] Compiling syn v2.0.38 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling regex-automata v0.4.3 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling regex v1.10.2 [INFO] [stderr] Compiling thiserror-impl v1.0.49 [INFO] [stderr] Compiling htsengine-sys v0.0.1 (/opt/rustwide/workdir/crates/htsengine-sys) [INFO] [stderr] error: failed to run custom build command for `htsengine-sys v0.0.1 (/opt/rustwide/workdir/crates/htsengine-sys)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/htsengine-sys-c99b0e11f2271724/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE = None [INFO] [stderr] CMAKE = None [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/htsengine-sys-12f1206177bc35db/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/crates/htsengine-sys/htsengine" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/htsengine-sys-12f1206177bc35db/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- The C compiler identification is GNU 11.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 11.4.0 [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/htsengine-sys-12f1206177bc35db/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [ 11%] Creating directories for 'htsengine-populate' [INFO] [stderr] [ 22%] Performing download step (git clone) for 'htsengine-populate' [INFO] [stderr] Cloning into 'htsengine-src'... [INFO] [stderr] fatal: unable to access 'https://github.com/r9y9/hts_engine_API.git/': Could not resolve host: github.com [INFO] [stderr] Cloning into 'htsengine-src'... [INFO] [stderr] fatal: unable to access 'https://github.com/r9y9/hts_engine_API.git/': Could not resolve host: github.com [INFO] [stderr] Cloning into 'htsengine-src'... [INFO] [stderr] fatal: unable to access 'https://github.com/r9y9/hts_engine_API.git/': Could not resolve host: github.com [INFO] [stderr] -- Had to git clone more than once: [INFO] [stderr] 3 times. [INFO] [stderr] CMake Error at htsengine-subbuild/htsengine-populate-prefix/tmp/htsengine-populate-gitclone.cmake:31 (message): [INFO] [stderr] Failed to clone repository: 'https://github.com/r9y9/hts_engine_API.git' [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] gmake[2]: *** [CMakeFiles/htsengine-populate.dir/build.make:102: htsengine-populate-prefix/src/htsengine-populate-stamp/htsengine-populate-download] Error 1 [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:83: CMakeFiles/htsengine-populate.dir/all] Error 2 [INFO] [stderr] gmake: *** [Makefile:91: all] Error 2 [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.22/Modules/FetchContent.cmake:1087 (message): [INFO] [stderr] Build step for htsengine failed: 2 [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.22/Modules/FetchContent.cmake:1216:EVAL:2 (__FetchContent_directPopulate) [INFO] [stderr] /usr/share/cmake-3.22/Modules/FetchContent.cmake:1216 (cmake_language) [INFO] [stderr] /usr/share/cmake-3.22/Modules/FetchContent.cmake:1259 (FetchContent_Populate) [INFO] [stderr] CMakeLists.txt:10 (FetchContent_MakeAvailable) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.50/src/lib.rs:1098:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5c37fc20654a - std::backtrace_rs::backtrace::libunwind::trace::h4a182ed5026c4960 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5 [INFO] [stderr] 1: 0x5c37fc20654a - std::backtrace_rs::backtrace::trace_unsynchronized::hd36eaf0d0af663ac [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5c37fc20654a - std::sys::backtrace::_print_fmt::h5bc686de8bf76aa3 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x5c37fc20654a - ::fmt::hd8bd9250b5d34cf2 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x5c37fc22a283 - core::fmt::rt::Argument::fmt::h479db8f948910918 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/core/src/fmt/rt.rs:177:76 [INFO] [stderr] 5: 0x5c37fc22a283 - core::fmt::write::h8ea7001525e04e92 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/core/src/fmt/mod.rs:1189:21 [INFO] [stderr] 6: 0x5c37fc202ed3 - std::io::Write::write_fmt::h9a3a3a90a20c720b [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/io/mod.rs:1884:15 [INFO] [stderr] 7: 0x5c37fc206392 - std::sys::backtrace::BacktraceLock::print::h524f4afae71bff25 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 8: 0x5c37fc20758c - std::panicking::default_hook::{{closure}}::hbf0efdb45c0ec2fa [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:268:22 [INFO] [stderr] 9: 0x5c37fc2073d2 - std::panicking::default_hook::hd8655fd75a36fb4e [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:295:9 [INFO] [stderr] 10: 0x5c37fc207bc7 - std::panicking::rust_panic_with_hook::hfd3e39fd18e5a522 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:801:13 [INFO] [stderr] 11: 0x5c37fc207a5a - std::panicking::begin_panic_handler::{{closure}}::h541106c2fc98c78e [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:674:13 [INFO] [stderr] 12: 0x5c37fc206a29 - std::sys::backtrace::__rust_end_short_backtrace::hd41b812be983a407 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/sys/backtrace.rs:170:18 [INFO] [stderr] 13: 0x5c37fc2076ec - rust_begin_unwind [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:665:5 [INFO] [stderr] 14: 0x5c37fc2290d0 - core::panicking::panic_fmt::h6d97ef49812eecdc [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/core/src/panicking.rs:76:14 [INFO] [stderr] 15: 0x5c37fc19b332 - cmake::fail::hee6dbfdb1f51fa3c [INFO] [stderr] 16: 0x5c37fc19ab09 - cmake::run::h1ace0534397f863e [INFO] [stderr] 17: 0x5c37fc196d0a - cmake::Config::build::h361f7378870c3042 [INFO] [stderr] 18: 0x5c37fc185349 - build_script_build::main::h94a154057b119aef [INFO] [stderr] 19: 0x5c37fc183d33 - core::ops::function::FnOnce::call_once::hb7ed0c1eb429fb94 [INFO] [stderr] 20: 0x5c37fc183c26 - std::sys::backtrace::__rust_begin_short_backtrace::hdc832b4551e7f67b [INFO] [stderr] 21: 0x5c37fc183b89 - std::rt::lang_start::{{closure}}::h0cc9eca2178babc4 [INFO] [stderr] 22: 0x5c37fc1fe967 - core::ops::function::impls:: for &F>::call_once::h85d3b6433c6201ad [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 23: 0x5c37fc1fe967 - std::panicking::try::do_call::h1e58a303c26811b2 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:557:40 [INFO] [stderr] 24: 0x5c37fc1fe967 - std::panicking::try::hf884ee642c4250a3 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:520:19 [INFO] [stderr] 25: 0x5c37fc1fe967 - std::panic::catch_unwind::h16d69298af9a3692 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panic.rs:358:14 [INFO] [stderr] 26: 0x5c37fc1fe967 - std::rt::lang_start_internal::{{closure}}::h5a8a6f94cdf753a6 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/rt.rs:174:48 [INFO] [stderr] 27: 0x5c37fc1fe967 - std::panicking::try::do_call::hf6ee2fe994f58e18 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:557:40 [INFO] [stderr] 28: 0x5c37fc1fe967 - std::panicking::try::hc1282bf2eeca2940 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:520:19 [INFO] [stderr] 29: 0x5c37fc1fe967 - std::panic::catch_unwind::h212572842a792e2c [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panic.rs:358:14 [INFO] [stderr] 30: 0x5c37fc1fe967 - std::rt::lang_start_internal::h9681d29d05b11740 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/rt.rs:174:20 [INFO] [stderr] 31: 0x5c37fc183b67 - std::rt::lang_start::h981e4cdeaf75deda [INFO] [stderr] 32: 0x5c37fc1856d5 - main [INFO] [stderr] 33: 0x7367e0d76d90 - [INFO] [stderr] 34: 0x7367e0d76e40 - __libc_start_main [INFO] [stderr] 35: 0x5c37fc183995 - _start [INFO] [stderr] 36: 0x0 - [INFO] running `Command { std: "docker" "inspect" "269e452ae0a794fc6a5381de624c424f8cbad1056a732ad3eeb4b6bb0b5500ed", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "269e452ae0a794fc6a5381de624c424f8cbad1056a732ad3eeb4b6bb0b5500ed", kill_on_drop: false }` [INFO] [stdout] 269e452ae0a794fc6a5381de624c424f8cbad1056a732ad3eeb4b6bb0b5500ed