[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ae36c59429e1ac7bc38bf4a4e6f3f2942bf58526 [INFO] checking 38/pyd4/ae36c59429e1ac7bc38bf4a4e6f3f2942bf58526 against master#ff1737bb00913444173658b4e0b274fd79aabf66 for pr-132712-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain ff1737bb00913444173658b4e0b274fd79aabf66 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ff1737bb00913444173658b4e0b274fd79aabf66" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ff1737bb00913444173658b4e0b274fd79aabf66" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/38/d4-format.git` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-derive-backend v0.12.4 [INFO] [stderr] Downloaded pyo3cls v0.12.4 [INFO] [stderr] Downloaded pyo3 v0.12.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+ff1737bb00913444173658b4e0b274fd79aabf66" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9337d9bb72363057ee2da6935b8e9ddfb11d159d4440bf17721256469f60f74f [INFO] running `Command { std: "docker" "start" "-a" "9337d9bb72363057ee2da6935b8e9ddfb11d159d4440bf17721256469f60f74f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9337d9bb72363057ee2da6935b8e9ddfb11d159d4440bf17721256469f60f74f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9337d9bb72363057ee2da6935b8e9ddfb11d159d4440bf17721256469f60f74f", kill_on_drop: false }` [INFO] [stdout] 9337d9bb72363057ee2da6935b8e9ddfb11d159d4440bf17721256469f60f74f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+ff1737bb00913444173658b4e0b274fd79aabf66" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7e6a322175a581b44f737270a50858b779cbd4089d0d17c18037c68a209d312e [INFO] running `Command { std: "docker" "start" "-a" "7e6a322175a581b44f737270a50858b779cbd4089d0d17c18037c68a209d312e", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling serde v1.0.127 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Checking instant v0.1.10 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Checking smallvec v1.6.1 [INFO] [stderr] Compiling inventory v0.1.10 [INFO] [stderr] Compiling serde_derive v1.0.127 [INFO] [stderr] Compiling serde_json v1.0.66 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Checking crossbeam-deque v0.8.1 [INFO] [stderr] Compiling unindent v0.1.7 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Compiling pyo3 v0.12.4 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Checking d4-framefile v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] Compiling pyo3-derive-backend v0.12.4 [INFO] [stderr] Compiling ctor v0.1.20 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Compiling pyo3cls v0.12.4 [INFO] [stderr] Compiling d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-e056a0bebe45ecda/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-679dba12c25ffcd6/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-679dba12c25ffcd6/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5: [INFO] [stderr] assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success() [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x582afb6a231a - std::backtrace_rs::backtrace::libunwind::trace::h4a182ed5026c4960 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5 [INFO] [stderr] 1: 0x582afb6a231a - std::backtrace_rs::backtrace::trace_unsynchronized::hd36eaf0d0af663ac [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x582afb6a231a - std::sys::backtrace::_print_fmt::h5bc686de8bf76aa3 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x582afb6a231a - ::fmt::hd8bd9250b5d34cf2 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x582afb6cb253 - core::fmt::rt::Argument::fmt::h479db8f948910918 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/core/src/fmt/rt.rs:177:76 [INFO] [stderr] 5: 0x582afb6cb253 - core::fmt::write::h8ea7001525e04e92 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/core/src/fmt/mod.rs:1189:21 [INFO] [stderr] 6: 0x582afb69ee03 - std::io::Write::write_fmt::h9a3a3a90a20c720b [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/io/mod.rs:1884:15 [INFO] [stderr] 7: 0x582afb6a2162 - std::sys::backtrace::BacktraceLock::print::h524f4afae71bff25 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 8: 0x582afb6a36dd - std::panicking::default_hook::{{closure}}::hbf0efdb45c0ec2fa [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:268:22 [INFO] [stderr] 9: 0x582afb6a3523 - std::panicking::default_hook::hd8655fd75a36fb4e [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:295:9 [INFO] [stderr] 10: 0x582afb6a3d17 - std::panicking::rust_panic_with_hook::hfd3e39fd18e5a522 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:801:13 [INFO] [stderr] 11: 0x582afb6a3b76 - std::panicking::begin_panic_handler::{{closure}}::h541106c2fc98c78e [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:667:13 [INFO] [stderr] 12: 0x582afb6a27f9 - std::sys::backtrace::__rust_end_short_backtrace::hd41b812be983a407 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/sys/backtrace.rs:170:18 [INFO] [stderr] 13: 0x582afb6a383c - rust_begin_unwind [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:665:5 [INFO] [stderr] 14: 0x582afb6c95a0 - core::panicking::panic_fmt::h6d97ef49812eecdc [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/core/src/panicking.rs:76:14 [INFO] [stderr] 15: 0x582afb6c962c - core::panicking::panic::h19ce288d8a8a80d7 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/core/src/panicking.rs:148:5 [INFO] [stderr] 16: 0x582afb2e6435 - build_script_build::build_own_htslib::h9387396bcb79b602 [INFO] [stderr] 17: 0x582afb2e68e1 - build_script_build::main::h85d3bec4ce3b001d [INFO] [stderr] 18: 0x582afb2e38b3 - core::ops::function::FnOnce::call_once::h371ccdebebd3328b [INFO] [stderr] 19: 0x582afb2e3596 - std::sys::backtrace::__rust_begin_short_backtrace::h3ca98d68e45fc4e9 [INFO] [stderr] 20: 0x582afb2e3579 - std::rt::lang_start::{{closure}}::h8797a7197940676f [INFO] [stderr] 21: 0x582afb69ac07 - core::ops::function::impls:: for &F>::call_once::h85d3b6433c6201ad [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 22: 0x582afb69ac07 - std::panicking::try::do_call::h1e58a303c26811b2 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:557:40 [INFO] [stderr] 23: 0x582afb69ac07 - std::panicking::try::hf884ee642c4250a3 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:520:19 [INFO] [stderr] 24: 0x582afb69ac07 - std::panic::catch_unwind::h16d69298af9a3692 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panic.rs:358:14 [INFO] [stderr] 25: 0x582afb69ac07 - std::rt::lang_start_internal::{{closure}}::h5a8a6f94cdf753a6 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/rt.rs:174:48 [INFO] [stderr] 26: 0x582afb69ac07 - std::panicking::try::do_call::hf6ee2fe994f58e18 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:557:40 [INFO] [stderr] 27: 0x582afb69ac07 - std::panicking::try::hc1282bf2eeca2940 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panicking.rs:520:19 [INFO] [stderr] 28: 0x582afb69ac07 - std::panic::catch_unwind::h212572842a792e2c [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/panic.rs:358:14 [INFO] [stderr] 29: 0x582afb69ac07 - std::rt::lang_start_internal::h9681d29d05b11740 [INFO] [stderr] at /rustc/ff1737bb00913444173658b4e0b274fd79aabf66/library/std/src/rt.rs:174:20 [INFO] [stderr] 30: 0x582afb2e3557 - std::rt::lang_start::h04cca723a071621a [INFO] [stderr] 31: 0x582afb2e6ef5 - main [INFO] [stderr] 32: 0x71fda2e2dd90 - [INFO] [stderr] 33: 0x71fda2e2de40 - __libc_start_main [INFO] [stderr] 34: 0x582afb2e2c45 - _start [INFO] [stderr] 35: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "7e6a322175a581b44f737270a50858b779cbd4089d0d17c18037c68a209d312e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7e6a322175a581b44f737270a50858b779cbd4089d0d17c18037c68a209d312e", kill_on_drop: false }` [INFO] [stdout] 7e6a322175a581b44f737270a50858b779cbd4089d0d17c18037c68a209d312e