[INFO] fetching crate chemfiles-sys 0.10.41...
[INFO] checking chemfiles-sys-0.10.41 against master#3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777 for pr-132289
[INFO] extracting crate chemfiles-sys 0.10.41 into /workspace/builds/worker-6-tc1/source
[INFO] validating manifest of crates.io crate chemfiles-sys 0.10.41 on toolchain 3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate chemfiles-sys 0.10.41
[INFO] finished tweaking crates.io crate chemfiles-sys 0.10.41
[INFO] tweaked toml for crates.io crate chemfiles-sys 0.10.41 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 3 packages to latest compatible versions
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a2c0927b82a666d2fce0355e5f8094322997288057574d6ee554f37e3977a193
[INFO] running `Command { std: "docker" "start" "-a" "a2c0927b82a666d2fce0355e5f8094322997288057574d6ee554f37e3977a193", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a2c0927b82a666d2fce0355e5f8094322997288057574d6ee554f37e3977a193", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a2c0927b82a666d2fce0355e5f8094322997288057574d6ee554f37e3977a193", kill_on_drop: false }`
[INFO] [stdout] a2c0927b82a666d2fce0355e5f8094322997288057574d6ee554f37e3977a193
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e09f1add7fb164b9693d0d515792d2aa03cad22c9502cdf34b61bfadf266d71d
[INFO] running `Command { std: "docker" "start" "-a" "e09f1add7fb164b9693d0d515792d2aa03cad22c9502cdf34b61bfadf266d71d", kill_on_drop: false }`
[INFO] [stderr]    Compiling cmake v0.1.51
[INFO] [stderr]    Compiling chemfiles-sys v0.10.41 (/opt/rustwide/workdir)
[INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.41 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-73bbba45fa9948c7/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE = None
[INFO] [stderr]   CMAKE = None
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-f9761ea93c891133/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/." "-DCHEMFILES_VERSION=0.10.4" "-DCHFL_RUST_PREBUILT_TARGET=x86_64-linux-gnu" "-DCHFL_RUST_PREBUILT_SHA256=2ac97eba5b79f8051cd86184e00379271c72e85d2bbcbcd50626b0ec602a1978" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-f9761ea93c891133/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   -- The CXX compiler identification is GNU 11.4.0
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ - skipped
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- trying to download https://github.com/chemfiles/chemfiles-prebuilt/releases/download/v0.10.4/chemfiles-static.v0.10.4.x86_64-linux-gnu.tar.gz
[INFO] [stderr]   -- failed to download prebuilt chemfiles, building from sources
[INFO] [stderr]   -- The C compiler identification is GNU 11.4.0
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc - skipped
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Unpacking zlib sources
[INFO] [stderr]   -- Unpacking lzma sources
[INFO] [stderr]   -- Unpacking bzip2 sources
[INFO] [stderr]   -- Unpacking fmt sources
[INFO] [stderr]   -- Unpacking toml11 sources
[INFO] [stderr]   -- Unpacking tng sources
[INFO] [stderr]   -- Unpacking molfiles sources
[INFO] [stderr]   -- Unpacking mmtf-cpp sources
[INFO] [stderr]   -- Unpacking pugixml sources
[INFO] [stderr]   -- Unpacking gemmi sources
[INFO] [stderr]   -- Configuring done
[INFO] [stderr]   -- Generating done
[INFO] [stderr]   -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-f9761ea93c891133/out/build
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-f9761ea93c891133/out/build" && MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "cmake" "--build" "." "--target" "install" "--config" "Debug"
[INFO] [stderr]   [  2%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/blocksort.c.o
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[INFO] [stderr]   [ 70%] Built target fmt
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning (dev) at chemfiles/CMakeLists.txt:35 (option):
[INFO] [stderr]     Policy CMP0077 is not set: option() honors normal variables.  Run "cmake
[INFO] [stderr]     --help-policy CMP0077" for policy details.  Use the cmake_policy command to
[INFO] [stderr]     set the policy and suppress this warning.
[INFO] [stderr] 
[INFO] [stderr]     For compatibility with older versions of CMake, option is clearing the
[INFO] [stderr]     normal variable 'BUILD_SHARED_LIBS'.
[INFO] [stderr]   This warning is for project developers.  Use -Wno-dev to suppress it.
[INFO] [stderr] 
[INFO] [stderr]   CMake Warning:
[INFO] [stderr]     Manually-specified variables were not used by the project:
[INFO] [stderr] 
[INFO] [stderr]       CMAKE_ASM_COMPILER
[INFO] [stderr]       CMAKE_ASM_FLAGS
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:90: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 1
[INFO] [stderr]   gmake[2]: *** Waiting for unfinished jobs....
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:146: chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 1
[INFO] [stderr]   gmake[1]: *** [CMakeFiles/Makefile2:214: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2
[INFO] [stderr]   gmake: *** [Makefile:136: all] Error 2
[INFO] [stderr]   thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.51/src/lib.rs:1100:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 2
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5f644fe35fba - std::backtrace_rs::backtrace::libunwind::trace::hc8717ea3ff88efc7
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5
[INFO] [stderr]      1:     0x5f644fe35fba - std::backtrace_rs::backtrace::trace_unsynchronized::h4cb12a240f50bc9d
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x5f644fe35fba - std::sys::backtrace::_print_fmt::hfb8f4575e12be528
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x5f644fe35fba - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h7767b02c5430d02b
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x5f644fe59333 - core::fmt::rt::Argument::fmt::h8658c1a0a94d2676
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/core/src/fmt/rt.rs:177:76
[INFO] [stderr]      5:     0x5f644fe59333 - core::fmt::write::hd9cf23088539bf85
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/core/src/fmt/mod.rs:1190:21
[INFO] [stderr]      6:     0x5f644fe32953 - std::io::Write::write_fmt::h516df85bf7181425
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/io/mod.rs:1839:15
[INFO] [stderr]      7:     0x5f644fe35e02 - std::sys::backtrace::BacktraceLock::print::h5907c3622e037863
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      8:     0x5f644fe36ffc - std::panicking::default_hook::{{closure}}::h13cd352e0714d74b
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/panicking.rs:268:22
[INFO] [stderr]      9:     0x5f644fe36e42 - std::panicking::default_hook::ha087b22e6b135389
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/panicking.rs:295:9
[INFO] [stderr]     10:     0x5f644fe375f7 - std::panicking::rust_panic_with_hook::ha12d21b564771d78
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/panicking.rs:801:13
[INFO] [stderr]     11:     0x5f644fe3748a - std::panicking::begin_panic_handler::{{closure}}::h29f91f01f78dfedc
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/panicking.rs:674:13
[INFO] [stderr]     12:     0x5f644fe36499 - std::sys::backtrace::__rust_end_short_backtrace::h1e39edc6648a642b
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/sys/backtrace.rs:170:18
[INFO] [stderr]     13:     0x5f644fe3711c - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/panicking.rs:665:5
[INFO] [stderr]     14:     0x5f644fe580e0 - core::panicking::panic_fmt::hea12f2402e677eaa
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/core/src/panicking.rs:75:14
[INFO] [stderr]     15:     0x5f644fdb5bf2 - cmake::fail::h6b3ac289eb1c7dee
[INFO] [stderr]     16:     0x5f644fdb53c9 - cmake::run::h321d5ec9f2c653b1
[INFO] [stderr]     17:     0x5f644fdb1dbf - cmake::Config::build::h078b621758c742c0
[INFO] [stderr]     18:     0x5f644fda5cd6 - build_script_build::build_chemfiles::h9398d4f786701a16
[INFO] [stderr]     19:     0x5f644fda5173 - build_script_build::main::haa1c738f1475691d
[INFO] [stderr]     20:     0x5f644fda34c3 - core::ops::function::FnOnce::call_once::h3005fa5d132095a4
[INFO] [stderr]     21:     0x5f644fda3436 - std::sys::backtrace::__rust_begin_short_backtrace::hd9a79dd55e5b4240
[INFO] [stderr]     22:     0x5f644fda3399 - std::rt::lang_start::{{closure}}::h0a3d713f3b795bef
[INFO] [stderr]     23:     0x5f644fe2ed77 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hdcc69c5250d896c3
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/core/src/ops/function.rs:284:13
[INFO] [stderr]     24:     0x5f644fe2ed77 - std::panicking::try::do_call::h8e74087e18c529fb
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/panicking.rs:557:40
[INFO] [stderr]     25:     0x5f644fe2ed77 - std::panicking::try::hafe5958fa1de7ce5
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/panicking.rs:520:19
[INFO] [stderr]     26:     0x5f644fe2ed77 - std::panic::catch_unwind::he7dd6e3079677b88
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/panic.rs:358:14
[INFO] [stderr]     27:     0x5f644fe2ed77 - std::rt::lang_start_internal::{{closure}}::h3deb900feda3337f
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/rt.rs:174:48
[INFO] [stderr]     28:     0x5f644fe2ed77 - std::panicking::try::do_call::h320a9b5b747cda95
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/panicking.rs:557:40
[INFO] [stderr]     29:     0x5f644fe2ed77 - std::panicking::try::h91bf02fd4fee4183
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/panicking.rs:520:19
[INFO] [stderr]     30:     0x5f644fe2ed77 - std::panic::catch_unwind::h19dd28683f4d8ff7
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/panic.rs:358:14
[INFO] [stderr]     31:     0x5f644fe2ed77 - std::rt::lang_start_internal::h02315d8cca736b32
[INFO] [stderr]                                  at /rustc/3f1be1ec7ec3d8e80beb381ee82164a0aa3ca777/library/std/src/rt.rs:174:20
[INFO] [stderr]     32:     0x5f644fda3377 - std::rt::lang_start::h3a282913d97250f4
[INFO] [stderr]     33:     0x5f644fda67c5 - main
[INFO] [stderr]     34:     0x7a59b9c6ad90 - <unknown>
[INFO] [stderr]     35:     0x7a59b9c6ae40 - __libc_start_main
[INFO] [stderr]     36:     0x5f644fda31a5 - _start
[INFO] [stderr]     37:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "e09f1add7fb164b9693d0d515792d2aa03cad22c9502cdf34b61bfadf266d71d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e09f1add7fb164b9693d0d515792d2aa03cad22c9502cdf34b61bfadf266d71d", kill_on_drop: false }`
[INFO] [stdout] e09f1add7fb164b9693d0d515792d2aa03cad22c9502cdf34b61bfadf266d71d
