[INFO] fetching crate haddock-restraints 0.5.0...
[INFO] checking haddock-restraints-0.5.0 against master#fd2c811d25ad5773fbd2463e058bf4edf4d44eb2 for pr-130443
[INFO] extracting crate haddock-restraints 0.5.0 into /workspace/builds/worker-0-tc1/source
[INFO] validating manifest of crates.io crate haddock-restraints 0.5.0 on toolchain fd2c811d25ad5773fbd2463e058bf4edf4d44eb2
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+fd2c811d25ad5773fbd2463e058bf4edf4d44eb2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate haddock-restraints 0.5.0
[INFO] finished tweaking crates.io crate haddock-restraints 0.5.0
[INFO] tweaked toml for crates.io crate haddock-restraints 0.5.0 written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] crate crates.io crate haddock-restraints 0.5.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+fd2c811d25ad5773fbd2463e058bf4edf4d44eb2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded prettyplease v0.2.20
[INFO] [stderr]   Downloaded rstar v0.11.0
[INFO] [stderr]   Downloaded doc-cfg v0.1.0
[INFO] [stderr]   Downloaded autotools v0.2.7
[INFO] [stderr]   Downloaded pdbtbx v0.11.0
[INFO] [stderr]   Downloaded freesasa-rs v0.1.3
[INFO] [stderr]   Downloaded freesasa-sys v0.1.12
[INFO] [stderr]   Downloaded pdb-handler v0.1.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+fd2c811d25ad5773fbd2463e058bf4edf4d44eb2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0a504ff86094c1133875fdbfe4c032b1a5385cd1722dfa659e9d7d8acaa6e67b
[INFO] running `Command { std: "docker" "start" "-a" "0a504ff86094c1133875fdbfe4c032b1a5385cd1722dfa659e9d7d8acaa6e67b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0a504ff86094c1133875fdbfe4c032b1a5385cd1722dfa659e9d7d8acaa6e67b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0a504ff86094c1133875fdbfe4c032b1a5385cd1722dfa659e9d7d8acaa6e67b", kill_on_drop: false }`
[INFO] [stdout] 0a504ff86094c1133875fdbfe4c032b1a5385cd1722dfa659e9d7d8acaa6e67b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+fd2c811d25ad5773fbd2463e058bf4edf4d44eb2" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f272ace9df13cf5833cfec682d69758e64642db38119a42d929ffc47531c5e84
[INFO] running `Command { std: "docker" "start" "-a" "f272ace9df13cf5833cfec682d69758e64642db38119a42d929ffc47531c5e84", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.85
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling prettyplease v0.2.20
[INFO] [stderr]    Compiling cc v1.1.10
[INFO] [stderr]    Compiling either v1.12.0
[INFO] [stderr]    Compiling serde v1.0.203
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]     Checking hash32 v0.2.1
[INFO] [stderr]     Checking spin v0.9.8
[INFO] [stderr]     Checking stable_deref_trait v1.2.0
[INFO] [stderr]     Checking miniz_oxide v0.7.3
[INFO] [stderr]    Compiling fs_extra v1.3.0
[INFO] [stderr]    Compiling bindgen v0.69.4
[INFO] [stderr]     Checking bytemuck v1.16.3
[INFO] [stderr]     Checking indexmap v2.2.6
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]     Checking anstyle-parse v0.2.4
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]     Checking safe_arch v0.7.2
[INFO] [stderr]    Compiling heapless v0.7.17
[INFO] [stderr]     Checking anstyle v1.0.7
[INFO] [stderr]     Checking colorchoice v1.0.1
[INFO] [stderr]     Checking anstyle-query v1.0.3
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.0
[INFO] [stderr]    Compiling serde_json v1.0.117
[INFO] [stderr]     Checking flate2 v1.0.30
[INFO] [stderr]     Checking linux-raw-sys v0.4.14
[INFO] [stderr]     Checking anstream v0.6.14
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking log v0.4.22
[INFO] [stderr]     Checking wide v0.7.28
[INFO] [stderr]    Compiling autotools v0.2.7
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]     Checking clap_builder v4.5.2
[INFO] [stderr]    Compiling syn v2.0.66
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]    Compiling doc-cfg v0.1.0
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking rstar v0.11.0
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking is-terminal v0.4.12
[INFO] [stderr]     Checking env_logger v0.10.2
[INFO] [stderr]     Checking ordered-float v4.2.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking fastrand v2.1.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking once_cell v1.19.0
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]    Compiling link-cplusplus v1.0.9
[INFO] [stderr]     Checking kd-tree v0.6.0
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr]     Checking simba v0.9.0
[INFO] [stderr]     Checking tempfile v3.12.0
[INFO] [stderr]    Compiling darling_core v0.20.10
[INFO] [stderr]    Compiling serde_derive v1.0.203
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling clap_derive v4.5.4
[INFO] [stderr]    Compiling darling_macro v0.20.10
[INFO] [stderr]     Checking clap v4.5.4
[INFO] [stderr]    Compiling darling v0.20.10
[INFO] [stderr]    Compiling serde_with_macros v2.3.3
[INFO] [stderr]     Checking nalgebra v0.33.0
[INFO] [stderr]    Compiling freesasa-sys v0.1.12
[INFO] [stderr]     Checking pdbtbx v0.11.0
[INFO] [stderr]     Checking serde_with v2.3.3
[INFO] [stderr]     Checking pdb-handler v0.1.0
[INFO] [stderr] error: failed to run custom build command for `freesasa-sys v0.1.12`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/freesasa-sys-58069e322b11dcd6/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=build.rs
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa" && "sh" "-c" "exec \"$0\" \"$@\"" "autoreconf" "-i"
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/build" && CC="cc" CFLAGS="-O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64" CXX="c++" CXXFLAGS="-O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64" "sh" "-c" "exec \"$0\" \"$@\"" "/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/configure" "--prefix=/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out" "--disable-shared" "--enable-static" "--disable-json" "--disable-threads" "--disable-xml"
[INFO] [stderr]   checking for a BSD-compatible install... /usr/bin/install -c
[INFO] [stderr]   checking whether build environment is sane... yes
[INFO] [stderr]   checking for a race-free mkdir -p... /usr/bin/mkdir -p
[INFO] [stderr]   checking for gawk... no
[INFO] [stderr]   checking for mawk... mawk
[INFO] [stderr]   checking whether make sets $(MAKE)... yes
[INFO] [stderr]   checking whether make supports nested variables... yes
[INFO] [stderr]   checking for gcc... cc
[INFO] [stderr]   checking whether the C compiler works... yes
[INFO] [stderr]   checking for C compiler default output file name... a.out
[INFO] [stderr]   checking for suffix of executables... 
[INFO] [stderr]   checking whether we are cross compiling... no
[INFO] [stderr]   checking for suffix of object files... o
[INFO] [stderr]   checking whether the compiler supports GNU C... yes
[INFO] [stderr]   checking whether cc accepts -g... yes
[INFO] [stderr]   checking for cc option to enable C11 features... none needed
[INFO] [stderr]   checking whether cc understands -c and -o together... yes
[INFO] [stderr]   checking whether make supports the include directive... yes (GNU style)
[INFO] [stderr]   checking dependency style of cc... gcc3
[INFO] [stderr]   checking whether the compiler supports GNU C++... yes
[INFO] [stderr]   checking whether c++ accepts -g... yes
[INFO] [stderr]   checking for c++ option to enable C++11 features... none needed
[INFO] [stderr]   checking dependency style of c++... gcc3
[INFO] [stderr]   checking for ranlib... ranlib
[INFO] [stderr]   checking for sqrt in -lm... yes
[INFO] [stderr]   checking for dlsym in -ldl... yes
[INFO] [stderr]   checking for stdio.h... yes
[INFO] [stderr]   checking for stdlib.h... yes
[INFO] [stderr]   checking for string.h... yes
[INFO] [stderr]   checking for inttypes.h... yes
[INFO] [stderr]   checking for stdint.h... yes
[INFO] [stderr]   checking for strings.h... yes
[INFO] [stderr]   checking for sys/stat.h... yes
[INFO] [stderr]   checking for sys/types.h... yes
[INFO] [stderr]   checking for unistd.h... yes
[INFO] [stderr]   checking for size_t... yes
[INFO] [stderr]   checking for working alloca.h... yes
[INFO] [stderr]   checking for alloca... yes
[INFO] [stderr]   checking for inttypes.h... (cached) yes
[INFO] [stderr]   checking for libintl.h... yes
[INFO] [stderr]   checking for malloc.h... yes
[INFO] [stderr]   checking for stddef.h... yes
[INFO] [stderr]   checking for stdlib.h... (cached) yes
[INFO] [stderr]   checking for string.h... (cached) yes
[INFO] [stderr]   checking for strings.h... (cached) yes
[INFO] [stderr]   checking for sys/time.h... yes
[INFO] [stderr]   checking for unistd.h... (cached) yes
[INFO] [stderr]   checking for dlfcn.h... yes
[INFO] [stderr]   checking for inline... inline
[INFO] [stderr]   checking for size_t... (cached) yes
[INFO] [stderr]   checking for C/C++ restrict keyword... __restrict__
[INFO] [stderr]   checking for int16_t... yes
[INFO] [stderr]   checking for int32_t... yes
[INFO] [stderr]   checking for int8_t... yes
[INFO] [stderr]   checking for uint16_t... yes
[INFO] [stderr]   checking for uint32_t... yes
[INFO] [stderr]   checking for uint64_t... yes
[INFO] [stderr]   checking for uint8_t... yes
[INFO] [stderr]   checking for inline... (cached) inline
[INFO] [stderr]   checking build system type... x86_64-pc-linux-gnu
[INFO] [stderr]   checking host system type... x86_64-pc-linux-gnu
[INFO] [stderr]   checking for GNU libc compatible malloc... yes
[INFO] [stderr]   checking for GNU libc compatible realloc... yes
[INFO] [stderr]   checking for memset... yes
[INFO] [stderr]   checking for mkdir... yes
[INFO] [stderr]   checking for sqrt... yes
[INFO] [stderr]   checking for strchr... yes
[INFO] [stderr]   checking for strdup... yes
[INFO] [stderr]   checking for strerror... yes
[INFO] [stderr]   checking for strncasecmp... yes
[INFO] [stderr]   checking for getopt_long... yes
[INFO] [stderr]   checking for getline... yes
[INFO] [stderr]   checking whether c++ supports C++14 features with -std=gnu++14... yes
[INFO] [stderr]   Building without thread support
[INFO] [stderr]   configure: Building without support for XML output.
[INFO] [stderr]   configure: Building without support for JSON output.
[INFO] [stderr]   checking that generated files are newer than configure... done
[INFO] [stderr]   configure: creating ./config.status
[INFO] [stderr]   config.status: creating Makefile
[INFO] [stderr]   config.status: creating src/Makefile
[INFO] [stderr]   config.status: creating doc/Makefile
[INFO] [stderr]   config.status: creating doc/Doxyfile
[INFO] [stderr]   config.status: creating doc/man/freesasa.1
[INFO] [stderr]   config.status: creating tests/Makefile
[INFO] [stderr]   config.status: creating share/Makefile
[INFO] [stderr]   config.status: creating tests/test-cli
[INFO] [stderr]   config.status: creating config.h
[INFO] [stderr]   config.status: executing depfiles commands
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/build" && MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "sh" "-c" "exec \"$0\" \"$@\"" "make" "install" "-j16"
[INFO] [stderr]   Making install in src
[INFO] [stderr]   make[1]: Entering directory '/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/build/src'
[INFO] [stderr]   c++ -std=gnu++14 -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/   -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/main.cc
[INFO] [stderr]   c++ -std=gnu++14 -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/   -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT cif.o -MD -MP -MF .deps/cif.Tpo -c -o cif.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/cif.cc
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT classifier.o -MD -MP -MF .deps/classifier.Tpo -c -o classifier.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/classifier.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT classifier_protor.o -MD -MP -MF .deps/classifier_protor.Tpo -c -o classifier_protor.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/classifier_protor.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT classifier_oons.o -MD -MP -MF .deps/classifier_oons.Tpo -c -o classifier_oons.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/classifier_oons.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT classifier_naccess.o -MD -MP -MF .deps/classifier_naccess.Tpo -c -o classifier_naccess.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/classifier_naccess.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT coord.o -MD -MP -MF .deps/coord.Tpo -c -o coord.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/coord.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT pdb.o -MD -MP -MF .deps/pdb.Tpo -c -o pdb.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/pdb.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT log.o -MD -MP -MF .deps/log.Tpo -c -o log.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/log.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT sasa_lr.o -MD -MP -MF .deps/sasa_lr.Tpo -c -o sasa_lr.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/sasa_lr.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT sasa_sr.o -MD -MP -MF .deps/sasa_sr.Tpo -c -o sasa_sr.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/sasa_sr.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT structure.o -MD -MP -MF .deps/structure.Tpo -c -o structure.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/structure.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT node.o -MD -MP -MF .deps/node.Tpo -c -o node.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/node.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT freesasa.o -MD -MP -MF .deps/freesasa.Tpo -c -o freesasa.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/freesasa.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT nb.o -MD -MP -MF .deps/nb.Tpo -c -o nb.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/nb.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT util.o -MD -MP -MF .deps/util.Tpo -c -o util.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/util.c
[INFO] [stderr]   mv -f .deps/classifier_oons.Tpo .deps/classifier_oons.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT rsa.o -MD -MP -MF .deps/rsa.Tpo -c -o rsa.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/rsa.c
[INFO] [stderr]   mv -f .deps/classifier_naccess.Tpo .deps/classifier_naccess.Po
[INFO] [stderr]   mv -f .deps/classifier_protor.Tpo .deps/classifier_protor.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT selection.o -MD -MP -MF .deps/selection.Tpo -c -o selection.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/selection.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT lexer.o -MD -MP -MF .deps/lexer.Tpo -c -o lexer.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/lexer.c
[INFO] [stderr]   mv -f .deps/util.Tpo .deps/util.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT parser.o -MD -MP -MF .deps/parser.Tpo -c -o parser.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/parser.c
[INFO] [stderr]   mv -f .deps/log.Tpo .deps/log.Po
[INFO] [stderr]   mv -f .deps/freesasa.Tpo .deps/freesasa.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT example.o -MD -MP -MF .deps/example.Tpo -c -o example.o /opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/freesasa/src/example.c
[INFO] [stderr]   mv -f .deps/pdb.Tpo .deps/pdb.Po
[INFO] [stderr]   mv -f .deps/sasa_sr.Tpo .deps/sasa_sr.Po
[INFO] [stderr]   mv -f .deps/sasa_lr.Tpo .deps/sasa_lr.Po
[INFO] [stderr]   mv -f .deps/coord.Tpo .deps/coord.Po
[INFO] [stderr]   mv -f .deps/node.Tpo .deps/node.Po
[INFO] [stderr]   mv -f .deps/rsa.Tpo .deps/rsa.Po
[INFO] [stderr]   mv -f .deps/nb.Tpo .deps/nb.Po
[INFO] [stderr]   mv -f .deps/classifier.Tpo .deps/classifier.Po
[INFO] [stderr]   mv -f .deps/example.Tpo .deps/example.Po
[INFO] [stderr]   mv -f .deps/parser.Tpo .deps/parser.Po
[INFO] [stderr]   mv -f .deps/structure.Tpo .deps/structure.Po
[INFO] [stderr]   mv -f .deps/selection.Tpo .deps/selection.Po
[INFO] [stderr]   mv -f .deps/lexer.Tpo .deps/lexer.Po
[INFO] [stderr]   rm -f libfreesasa.a
[INFO] [stderr]   ar cru libfreesasa.a classifier.o classifier_protor.o classifier_oons.o classifier_naccess.o coord.o pdb.o log.o sasa_lr.o sasa_sr.o structure.o node.o freesasa.o nb.o util.o rsa.o selection.o lexer.o parser.o   
[INFO] [stderr]   ranlib libfreesasa.a
[INFO] [stderr]   cc   -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64   -o example example.o libfreesasa.a   -ldl -lm 
[INFO] [stderr]   mv -f .deps/main.Tpo .deps/main.Po
[INFO] [stderr]   mv -f .deps/cif.Tpo .deps/cif.Po
[INFO] [stderr]   c++ -std=gnu++14  -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64   -o freesasa main.o cif.o -lc++ libfreesasa.a   -ldl -lm 
[INFO] [stderr]   make[1]: Leaving directory '/opt/rustwide/target/debug/build/freesasa-sys-b36524801e8fd66d/out/build/src'
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   configure.ac:42: warning: The macro `AC_PROG_CC_C99' is obsolete.
[INFO] [stderr]   configure.ac:42: You should run autoupdate.
[INFO] [stderr]   ./lib/autoconf/c.m4:1659: AC_PROG_CC_C99 is expanded from...
[INFO] [stderr]   configure.ac:42: the top level
[INFO] [stderr]   configure.ac:123: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete
[INFO] [stderr]   ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from...
[INFO] [stderr]   ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from...
[INFO] [stderr]   configure.ac:123: the top level
[INFO] [stderr]   configure.ac:16: installing './compile'
[INFO] [stderr]   configure.ac:46: installing './config.guess'
[INFO] [stderr]   configure.ac:46: installing './config.sub'
[INFO] [stderr]   configure.ac:6: installing './install-sh'
[INFO] [stderr]   configure.ac:6: installing './missing'
[INFO] [stderr]   src/Makefile.am: installing './depcomp'
[INFO] [stderr]   parallel-tests: installing './test-driver'
[INFO] [stderr]   configure: WARNING: unrecognized options: --disable-shared, --enable-static
[INFO] [stderr]   configure: WARNING: unrecognized options: --disable-shared, --enable-static
[INFO] [stderr]   make: warning: -j16 forced in submake: resetting jobserver mode.
[INFO] [stderr]   ar: `u' modifier ignored since `D' is the default (see `U')
[INFO] [stderr]   /usr/bin/ld: cannot find -lc++: No such file or directory
[INFO] [stderr]   collect2: error: ld returned 1 exit status
[INFO] [stderr]   make[1]: *** [Makefile:521: freesasa] Error 1
[INFO] [stderr]   make: *** [Makefile:391: install-recursive] Error 1
[INFO] [stderr]   thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/autotools-0.2.7/src/lib.rs:790:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 2
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x64beaf505c5a - std::backtrace_rs::backtrace::libunwind::trace::h7d463d46f41c1625
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5
[INFO] [stderr]      1:     0x64beaf505c5a - std::backtrace_rs::backtrace::trace_unsynchronized::h476f8f3b73852bd8
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x64beaf505c5a - std::sys::backtrace::_print_fmt::h1442fc2d80f84a69
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x64beaf505c5a - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hfeba7cbf44c2b035
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x64beaf52f1bb - core::fmt::rt::Argument::fmt::ha5da46916c25e7eb
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/core/src/fmt/rt.rs:177:76
[INFO] [stderr]      5:     0x64beaf52f1bb - core::fmt::write::hcf1a9b5a168bab42
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/core/src/fmt/mod.rs:1186:21
[INFO] [stderr]      6:     0x64beaf502243 - std::io::Write::write_fmt::h343cbf8f0f760140
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/io/mod.rs:1823:15
[INFO] [stderr]      7:     0x64beaf505aa2 - std::sys::backtrace::BacktraceLock::print::h0ae6c23bbfb5f51d
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      8:     0x64beaf506f87 - std::panicking::default_hook::{{closure}}::h8b07c33038b0c409
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/panicking.rs:268:22
[INFO] [stderr]      9:     0x64beaf506db6 - std::panicking::default_hook::hb2958c2545ef77af
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/panicking.rs:295:9
[INFO] [stderr]     10:     0x64beaf5075c7 - std::panicking::rust_panic_with_hook::h7dbaabf3e609e10d
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/panicking.rs:801:13
[INFO] [stderr]     11:     0x64beaf507467 - std::panicking::begin_panic_handler::{{closure}}::h1b159749db0a4fbc
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/panicking.rs:674:13
[INFO] [stderr]     12:     0x64beaf506139 - std::sys::backtrace::__rust_end_short_backtrace::hd4f2aecc8171f6c9
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/sys/backtrace.rs:170:18
[INFO] [stderr]     13:     0x64beaf5070f4 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/panicking.rs:665:5
[INFO] [stderr]     14:     0x64beaf52d523 - core::panicking::panic_fmt::hbd7893aa48b90018
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/core/src/panicking.rs:74:14
[INFO] [stderr]     15:     0x64beaf48e682 - autotools::fail::h4488c36ec8a27153
[INFO] [stderr]     16:     0x64beaf48c955 - autotools::Config::build::h0938212495a8a18e
[INFO] [stderr]     17:     0x64beaef5fa8e - build_script_build::main::h55877776154542d0
[INFO] [stderr]     18:     0x64beaef573c3 - core::ops::function::FnOnce::call_once::hf6148a1c38e3a9c3
[INFO] [stderr]     19:     0x64beaef56906 - std::sys::backtrace::__rust_begin_short_backtrace::hed86e7d35301f464
[INFO] [stderr]     20:     0x64beaef567e9 - std::rt::lang_start::{{closure}}::hff3241da73a13a36
[INFO] [stderr]     21:     0x64beaf4fe090 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hfad295795d7a894f
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/core/src/ops/function.rs:284:13
[INFO] [stderr]     22:     0x64beaf4fe090 - std::panicking::try::do_call::hc9dff1cc4e54de5a
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/panicking.rs:557:40
[INFO] [stderr]     23:     0x64beaf4fe090 - std::panicking::try::h812dea15f7b65398
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/panicking.rs:520:19
[INFO] [stderr]     24:     0x64beaf4fe090 - std::panic::catch_unwind::h2981155ef2c37051
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/panic.rs:348:14
[INFO] [stderr]     25:     0x64beaf4fe090 - std::rt::lang_start_internal::{{closure}}::h4314f9f12a96aa2f
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/rt.rs:143:48
[INFO] [stderr]     26:     0x64beaf4fe090 - std::panicking::try::do_call::ha990fc313fde27df
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/panicking.rs:557:40
[INFO] [stderr]     27:     0x64beaf4fe090 - std::panicking::try::he56b3ad7c18dbde8
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/panicking.rs:520:19
[INFO] [stderr]     28:     0x64beaf4fe090 - std::panic::catch_unwind::hd440ffabd1849607
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/panic.rs:348:14
[INFO] [stderr]     29:     0x64beaf4fe090 - std::rt::lang_start_internal::h4f26667a84827d07
[INFO] [stderr]                                  at /rustc/fd2c811d25ad5773fbd2463e058bf4edf4d44eb2/library/std/src/rt.rs:143:20
[INFO] [stderr]     30:     0x64beaef567c7 - std::rt::lang_start::hc4653aa3973fc62e
[INFO] [stderr]     31:     0x64beaef60335 - main
[INFO] [stderr]     32:     0x7ac416564d90 - <unknown>
[INFO] [stderr]     33:     0x7ac416564e40 - __libc_start_main
[INFO] [stderr]     34:     0x64beaef55d15 - _start
[INFO] [stderr]     35:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "f272ace9df13cf5833cfec682d69758e64642db38119a42d929ffc47531c5e84", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f272ace9df13cf5833cfec682d69758e64642db38119a42d929ffc47531c5e84", kill_on_drop: false }`
[INFO] [stdout] f272ace9df13cf5833cfec682d69758e64642db38119a42d929ffc47531c5e84
