[INFO] fetching crate chemfiles 0.10.41...
[INFO] checking chemfiles-0.10.41 against try#47af3d0de9d26c7deba4cfb203b710cc3f764e91 for pr-130443
[INFO] extracting crate chemfiles 0.10.41 into /workspace/builds/worker-1-tc2/source
[INFO] validating manifest of crates.io crate chemfiles 0.10.41 on toolchain 47af3d0de9d26c7deba4cfb203b710cc3f764e91
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+47af3d0de9d26c7deba4cfb203b710cc3f764e91" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate chemfiles 0.10.41
[INFO] finished tweaking crates.io crate chemfiles 0.10.41
[INFO] tweaked toml for crates.io crate chemfiles 0.10.41 written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] crate crates.io crate chemfiles 0.10.41 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+47af3d0de9d26c7deba4cfb203b710cc3f764e91" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+47af3d0de9d26c7deba4cfb203b710cc3f764e91" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b7afc25b4e113e515619c0120ef97fe70b32ba70ff4eaf3a33af75f81b9854b9
[INFO] running `Command { std: "docker" "start" "-a" "b7afc25b4e113e515619c0120ef97fe70b32ba70ff4eaf3a33af75f81b9854b9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b7afc25b4e113e515619c0120ef97fe70b32ba70ff4eaf3a33af75f81b9854b9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b7afc25b4e113e515619c0120ef97fe70b32ba70ff4eaf3a33af75f81b9854b9", kill_on_drop: false }`
[INFO] [stdout] b7afc25b4e113e515619c0120ef97fe70b32ba70ff4eaf3a33af75f81b9854b9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+47af3d0de9d26c7deba4cfb203b710cc3f764e91" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4db151a2a03d4dd45277ab1bed3d0efd1bfab3d704f674e396b87eea585acb42
[INFO] running `Command { std: "docker" "start" "-a" "4db151a2a03d4dd45277ab1bed3d0efd1bfab3d704f674e396b87eea585acb42", kill_on_drop: false }`
[INFO] [stderr]    Compiling cmake v0.1.48
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling chemfiles-sys v0.10.41
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.41`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-203f72b6fda978fb/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE = None
[INFO] [stderr]   CMAKE = None
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-55679c8e17984035/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/chemfiles-sys-0.10.41/." "-DCHEMFILES_VERSION=0.10.4" "-DCHFL_RUST_PREBUILT_TARGET=x86_64-linux-gnu" "-DCHFL_RUST_PREBUILT_SHA256=2ac97eba5b79f8051cd86184e00379271c72e85d2bbcbcd50626b0ec602a1978" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-55679c8e17984035/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   -- The CXX compiler identification is GNU 11.4.0
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ - skipped
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- trying to download https://github.com/chemfiles/chemfiles-prebuilt/releases/download/v0.10.4/chemfiles-static.v0.10.4.x86_64-linux-gnu.tar.gz
[INFO] [stderr]   -- failed to download prebuilt chemfiles, building from sources
[INFO] [stderr]   -- The C compiler identification is GNU 11.4.0
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc - skipped
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Unpacking zlib sources
[INFO] [stderr]   -- Unpacking lzma sources
[INFO] [stderr]   -- Unpacking bzip2 sources
[INFO] [stderr]   -- Unpacking fmt sources
[INFO] [stderr]   -- Unpacking toml11 sources
[INFO] [stderr]   -- Unpacking tng sources
[INFO] [stderr]   -- Unpacking molfiles sources
[INFO] [stderr]   -- Unpacking mmtf-cpp sources
[INFO] [stderr]   -- Unpacking pugixml sources
[INFO] [stderr]   -- Unpacking gemmi sources
[INFO] [stderr]   -- Configuring done
[INFO] [stderr]   -- Generating done
[INFO] [stderr]   -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-55679c8e17984035/out/build
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-55679c8e17984035/out/build" && MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "cmake" "--build" "." "--target" "install" "--config" "Debug" "--parallel" "8"
[INFO] [stderr]   [  1%] Building CXX object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o
[INFO] [stderr]   [  2%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/check.c.o
[INFO] [stderr]   [  3%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o
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[INFO] [stderr]   [  5%] Building CXX object chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o
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[INFO] [stderr]   [ 18%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/alone_encoder.c.o
[INFO] [stderr]   [ 19%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzclose.c.o
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[INFO] [stderr]   [ 23%] Built target bzip2
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[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning (dev) at chemfiles/CMakeLists.txt:35 (option):
[INFO] [stderr]     Policy CMP0077 is not set: option() honors normal variables.  Run "cmake
[INFO] [stderr]     --help-policy CMP0077" for policy details.  Use the cmake_policy command to
[INFO] [stderr]     set the policy and suppress this warning.
[INFO] [stderr] 
[INFO] [stderr]     For compatibility with older versions of CMake, option is clearing the
[INFO] [stderr]     normal variable 'BUILD_SHARED_LIBS'.
[INFO] [stderr]   This warning is for project developers.  Use -Wno-dev to suppress it.
[INFO] [stderr] 
[INFO] [stderr]   CMake Warning:
[INFO] [stderr]     Manually-specified variables were not used by the project:
[INFO] [stderr] 
[INFO] [stderr]       CMAKE_ASM_COMPILER
[INFO] [stderr]       CMAKE_ASM_FLAGS
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   gmake: warning: -j8 forced in submake: resetting jobserver mode.
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:90: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 1
[INFO] [stderr]   gmake[2]: *** Waiting for unfinished jobs....
[INFO] [stderr]   gmake[1]: *** [CMakeFiles/Makefile2:214: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2
[INFO] [stderr]   gmake: *** [Makefile:136: all] Error 2
[INFO] [stderr]   thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.48/src/lib.rs:975:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 2
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5e43688bdc2a - std::backtrace_rs::backtrace::libunwind::trace::h1a1e572723065690
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5
[INFO] [stderr]      1:     0x5e43688bdc2a - std::backtrace_rs::backtrace::trace_unsynchronized::h1276564cb74b63a1
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x5e43688bdc2a - std::sys::backtrace::_print_fmt::h84871980db6e0e53
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x5e43688bdc2a - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h4088fd32dca526b7
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x5e43688e0b1b - core::fmt::rt::Argument::fmt::h56a71fe22ed738aa
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/core/src/fmt/rt.rs:177:76
[INFO] [stderr]      5:     0x5e43688e0b1b - core::fmt::write::h194fcda28a99c511
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/core/src/fmt/mod.rs:1186:21
[INFO] [stderr]      6:     0x5e43688ba743 - std::io::Write::write_fmt::h6dcab05f9fb3320d
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/io/mod.rs:1823:15
[INFO] [stderr]      7:     0x5e43688bda72 - std::sys::backtrace::BacktraceLock::print::h587b834c61bc676c
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      8:     0x5e43688bef57 - std::panicking::default_hook::{{closure}}::h1647900569bd226e
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/panicking.rs:268:22
[INFO] [stderr]      9:     0x5e43688bed86 - std::panicking::default_hook::h465fda42c5bc2837
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/panicking.rs:295:9
[INFO] [stderr]     10:     0x5e43688bf597 - std::panicking::rust_panic_with_hook::hc56ab325220cbe2c
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/panicking.rs:801:13
[INFO] [stderr]     11:     0x5e43688bf437 - std::panicking::begin_panic_handler::{{closure}}::h316d6705fe04cd83
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/panicking.rs:674:13
[INFO] [stderr]     12:     0x5e43688be109 - std::sys::backtrace::__rust_end_short_backtrace::h8a1797ffc3892a9a
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/sys/backtrace.rs:170:18
[INFO] [stderr]     13:     0x5e43688bf0c4 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/panicking.rs:665:5
[INFO] [stderr]     14:     0x5e43688df983 - core::panicking::panic_fmt::h80cb49115195fc7a
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/core/src/panicking.rs:74:14
[INFO] [stderr]     15:     0x5e4368850db2 - cmake::fail::he83a94dcf580908f
[INFO] [stderr]     16:     0x5e43688504e9 - cmake::run::hdbcb1c72f1fa65a5
[INFO] [stderr]     17:     0x5e436884d6c8 - cmake::Config::build::h791a07a11a8df9bc
[INFO] [stderr]     18:     0x5e436884689e - build_script_build::build_chemfiles::h85a9a326d49f856e
[INFO] [stderr]     19:     0x5e4368845d43 - build_script_build::main::h5508738851c7c732
[INFO] [stderr]     20:     0x5e4368843ff3 - core::ops::function::FnOnce::call_once::hb78af8b25d82d008
[INFO] [stderr]     21:     0x5e4368843f16 - std::sys::backtrace::__rust_begin_short_backtrace::hd11ce93414c46816
[INFO] [stderr]     22:     0x5e4368843e79 - std::rt::lang_start::{{closure}}::he9f5d239f3a5cbf7
[INFO] [stderr]     23:     0x5e43688b6950 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hf344da535fe78f77
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/core/src/ops/function.rs:284:13
[INFO] [stderr]     24:     0x5e43688b6950 - std::panicking::try::do_call::h2fbf0504fe70cb61
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/panicking.rs:557:40
[INFO] [stderr]     25:     0x5e43688b6950 - std::panicking::try::h5063802c35bb4ab7
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/panicking.rs:520:19
[INFO] [stderr]     26:     0x5e43688b6950 - std::panic::catch_unwind::h0b208b69c0a4c4fc
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/panic.rs:348:14
[INFO] [stderr]     27:     0x5e43688b6950 - std::rt::lang_start_internal::{{closure}}::ha9b70365f04a863f
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/rt.rs:143:48
[INFO] [stderr]     28:     0x5e43688b6950 - std::panicking::try::do_call::h0081cede6293561d
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/panicking.rs:557:40
[INFO] [stderr]     29:     0x5e43688b6950 - std::panicking::try::h5d6b53913d4208f1
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/panicking.rs:520:19
[INFO] [stderr]     30:     0x5e43688b6950 - std::panic::catch_unwind::h02006366d4ca7362
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/panic.rs:348:14
[INFO] [stderr]     31:     0x5e43688b6950 - std::rt::lang_start_internal::hbb04572074a32f7c
[INFO] [stderr]                                  at /rustc/47af3d0de9d26c7deba4cfb203b710cc3f764e91/library/std/src/rt.rs:143:20
[INFO] [stderr]     32:     0x5e4368843e57 - std::rt::lang_start::hf0bd13c495336fbc
[INFO] [stderr]     33:     0x5e4368847385 - main
[INFO] [stderr]     34:     0x71e86dcffd90 - <unknown>
[INFO] [stderr]     35:     0x71e86dcffe40 - __libc_start_main
[INFO] [stderr]     36:     0x5e4368843c85 - _start
[INFO] [stderr]     37:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "4db151a2a03d4dd45277ab1bed3d0efd1bfab3d704f674e396b87eea585acb42", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4db151a2a03d4dd45277ab1bed3d0efd1bfab3d704f674e396b87eea585acb42", kill_on_drop: false }`
[INFO] [stdout] 4db151a2a03d4dd45277ab1bed3d0efd1bfab3d704f674e396b87eea585acb42
