[INFO] fetching crate hmm_tblout 0.2.1... [INFO] testing hmm_tblout-0.2.1 against master#8c0ec05f7dc9ef185eea9f36c5638e74e43935bf for pr-130285 [INFO] extracting crate hmm_tblout 0.2.1 into /workspace/builds/worker-5-tc1/source [INFO] validating manifest of crates.io crate hmm_tblout 0.2.1 on toolchain 8c0ec05f7dc9ef185eea9f36c5638e74e43935bf [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hmm_tblout 0.2.1 [INFO] finished tweaking crates.io crate hmm_tblout 0.2.1 [INFO] tweaked toml for crates.io crate hmm_tblout 0.2.1 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] crate crates.io crate hmm_tblout 0.2.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a6e696f2e37eb66ac47ef591960901d720203312d3260dfe59094a482b1264d7 [INFO] running `Command { std: "docker" "start" "-a" "a6e696f2e37eb66ac47ef591960901d720203312d3260dfe59094a482b1264d7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a6e696f2e37eb66ac47ef591960901d720203312d3260dfe59094a482b1264d7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a6e696f2e37eb66ac47ef591960901d720203312d3260dfe59094a482b1264d7", kill_on_drop: false }` [INFO] [stdout] a6e696f2e37eb66ac47ef591960901d720203312d3260dfe59094a482b1264d7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0112efa399c6f0c7763ad4519b495c4f0f2388108ae405ca1067c787738f6a88 [INFO] running `Command { std: "docker" "start" "-a" "0112efa399c6f0c7763ad4519b495c4f0f2388108ae405ca1067c787738f6a88", kill_on_drop: false }` [INFO] [stderr] Compiling hmm_tblout v0.2.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.16s [INFO] running `Command { std: "docker" "inspect" "0112efa399c6f0c7763ad4519b495c4f0f2388108ae405ca1067c787738f6a88", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0112efa399c6f0c7763ad4519b495c4f0f2388108ae405ca1067c787738f6a88", kill_on_drop: false }` [INFO] [stdout] 0112efa399c6f0c7763ad4519b495c4f0f2388108ae405ca1067c787738f6a88 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 29440409284ab9e4d47e9918ab6c9cdab4ab00a5edd8b5a9d257aa5d1da30001 [INFO] running `Command { std: "docker" "start" "-a" "29440409284ab9e4d47e9918ab6c9cdab4ab00a5edd8b5a9d257aa5d1da30001", kill_on_drop: false }` [INFO] [stderr] Compiling hmm_tblout v0.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: constant `NHMMSCAN_FILE` is never used [INFO] [stdout] --> src/lib.rs:136:11 [INFO] [stdout] | [INFO] [stdout] 136 | const NHMMSCAN_FILE: &str = "# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom ... [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `HMMSCAN_FILE` is never used [INFO] [stdout] --> src/lib.rs:157:11 [INFO] [stdout] | [INFO] [stdout] 157 | const HMMSCAN_FILE: &str = "# --- full sequence ---- --- best 1 domain ... [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `HMMSEARCH_FILE` is never used [INFO] [stdout] --> src/lib.rs:185:11 [INFO] [stdout] | [INFO] [stdout] 185 | const HMMSEARCH_FILE: &str = "# --- full sequence ---- --- best 1 domai... [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.30s [INFO] running `Command { std: "docker" "inspect" "29440409284ab9e4d47e9918ab6c9cdab4ab00a5edd8b5a9d257aa5d1da30001", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "29440409284ab9e4d47e9918ab6c9cdab4ab00a5edd8b5a9d257aa5d1da30001", kill_on_drop: false }` [INFO] [stdout] 29440409284ab9e4d47e9918ab6c9cdab4ab00a5edd8b5a9d257aa5d1da30001 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 070060f47a87a581289c71e34ba5a36cc060f798d5fc5af27e79c88a8c0064f7 [INFO] running `Command { std: "docker" "start" "-a" "070060f47a87a581289c71e34ba5a36cc060f798d5fc5af27e79c88a8c0064f7", kill_on_drop: false }` [INFO] [stderr] warning: constant `NHMMSCAN_FILE` is never used [INFO] [stderr] --> src/lib.rs:136:11 [INFO] [stderr] | [INFO] [stderr] 136 | const NHMMSCAN_FILE: &str = "# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom ... [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: constant `HMMSCAN_FILE` is never used [INFO] [stderr] --> src/lib.rs:157:11 [INFO] [stderr] | [INFO] [stderr] 157 | const HMMSCAN_FILE: &str = "# --- full sequence ---- --- best 1 domain ... [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: constant `HMMSEARCH_FILE` is never used [INFO] [stderr] --> src/lib.rs:185:11 [INFO] [stderr] | [INFO] [stderr] 185 | const HMMSEARCH_FILE: &str = "# --- full sequence ---- --- best 1 domai... [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `hmm_tblout` (lib test) generated 3 warnings [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.00s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/hmm_tblout-cdde539c44ddd996) [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test tests::test_jackhmmer_meta ... ok [INFO] [stdout] test tests::test_jackhmmer_records ... ok [INFO] [stdout] test tests::test_meta ... ok [INFO] [stdout] test tests::test_phmmer_records ... ok [INFO] [stdout] test tests::test_whole_file ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests hmm_tblout [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - (line 7) - compile ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/lib.rs - (line 7) stdout ---- [INFO] [stdout] error[E0254]: the name `hmm_tblout` is defined multiple times [INFO] [stdout] --> src/lib.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 3 | extern crate r#hmm_tblout; [INFO] [stdout] | -------------------------- previous import of the extern crate `hmm_tblout` here [INFO] [stdout] 4 | use hmm_tblout; [INFO] [stdout] | ^^^^^^^^^^ `hmm_tblout` reimported here [INFO] [stdout] | [INFO] [stdout] = note: `hmm_tblout` must be defined only once in the type namespace of this module [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0254`. [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/lib.rs - (line 7) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s [INFO] [stdout] [INFO] [stderr] error: doctest failed, to rerun pass `--doc` [INFO] running `Command { std: "docker" "inspect" "070060f47a87a581289c71e34ba5a36cc060f798d5fc5af27e79c88a8c0064f7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "070060f47a87a581289c71e34ba5a36cc060f798d5fc5af27e79c88a8c0064f7", kill_on_drop: false }` [INFO] [stdout] 070060f47a87a581289c71e34ba5a36cc060f798d5fc5af27e79c88a8c0064f7