[INFO] cloning repository https://github.com/Mimerme/Mimerme [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Mimerme/Mimerme" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] df63a69dd00123b2eb2ab3520f84fe54a79a107d [INFO] testing Mimerme/Mimerme/df63a69dd00123b2eb2ab3520f84fe54a79a107d against master#8c0ec05f7dc9ef185eea9f36c5638e74e43935bf for pr-130285 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Mimerme/Mimerme on toolchain 8c0ec05f7dc9ef185eea9f36c5638e74e43935bf [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Mimerme/Mimerme [INFO] finished tweaking git repo https://github.com/Mimerme/Mimerme [INFO] tweaked toml for git repo https://github.com/Mimerme/Mimerme written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/Mimerme/Mimerme already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded snafu v0.6.0 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded bio-types v0.6.0 [INFO] [stderr] Downloaded snafu-derive v0.6.3 [INFO] [stderr] Downloaded clang-sys v0.29.2 [INFO] [stderr] Downloaded rust-htslib v0.29.0 [INFO] [stderr] Downloaded hts-sys v1.10.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7d12ca7d824c805888e085eb31958ed99bb9ae61170eca2bcd210cb40f5342d7 [INFO] running `Command { std: "docker" "start" "-a" "7d12ca7d824c805888e085eb31958ed99bb9ae61170eca2bcd210cb40f5342d7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7d12ca7d824c805888e085eb31958ed99bb9ae61170eca2bcd210cb40f5342d7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7d12ca7d824c805888e085eb31958ed99bb9ae61170eca2bcd210cb40f5342d7", kill_on_drop: false }` [INFO] [stdout] 7d12ca7d824c805888e085eb31958ed99bb9ae61170eca2bcd210cb40f5342d7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 54377aabef013db5cb9983d57704cfece1b1ab0acbbf296e2ad652d061a91044 [INFO] running `Command { std: "docker" "start" "-a" "54377aabef013db5cb9983d57704cfece1b1ab0acbbf296e2ad652d061a91044", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Compiling version_check v0.9.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling bindgen v0.53.2 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling lazycell v1.2.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling serde v1.0.105 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling smallvec v1.2.0 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling nom v5.1.1 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling unicode-normalization v0.1.12 [INFO] [stderr] Compiling clang-sys v0.29.2 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling itertools v0.8.2 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling url v2.1.1 [INFO] [stderr] Compiling regex v1.3.6 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling serde_derive v1.0.105 [INFO] [stderr] Compiling snafu-derive v0.6.3 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling snafu v0.6.0 [INFO] [stderr] Compiling hts-sys v1.10.2 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling bincode v1.2.1 [INFO] [stderr] Compiling rust-htslib v0.29.0 [INFO] [stderr] Compiling fmmap v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::str::Chars` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::str::Chars; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::iter::Rev` [INFO] [stdout] --> src/main.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use std::iter::Rev; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Aux` [INFO] [stdout] --> src/main.rs:12:45 [INFO] [stdout] | [INFO] [stdout] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar}; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::convert::TryFrom` [INFO] [stdout] --> src/main.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::convert::TryFrom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `thread` and `time` [INFO] [stdout] --> src/main.rs:15:11 [INFO] [stdout] | [INFO] [stdout] 15 | use std::{thread, time}; [INFO] [stdout] | ^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/main.rs:356:3 [INFO] [stdout] | [INFO] [stdout] 356 | }; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:110:7 [INFO] [stdout] | [INFO] [stdout] 110 | let mut c1 = remaining_query.next().unwrap(); [INFO] [stdout] | ----^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed_pos` [INFO] [stdout] --> src/main.rs:392:7 [INFO] [stdout] | [INFO] [stdout] 392 | let seed_pos = 0; [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:659:6 [INFO] [stdout] | [INFO] [stdout] 659 | let mut sequence = [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:665:11 [INFO] [stdout] | [INFO] [stdout] 665 | let mut sequence = fs::read_to_string(input_file) [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:669:11 [INFO] [stdout] | [INFO] [stdout] 669 | let mut split = sequence.split("\n"); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:792:6 [INFO] [stdout] | [INFO] [stdout] 792 | let mut sequence = [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:796:9 [INFO] [stdout] | [INFO] [stdout] 796 | let mut sequence = fs::read_to_string(input_file) [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:800:9 [INFO] [stdout] | [INFO] [stdout] 800 | let mut split = sequence.split("\n"); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `name` and `id` are never read [INFO] [stdout] --> src/main.rs:62:2 [INFO] [stdout] | [INFO] [stdout] 61 | struct GenRead{ [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] 62 | name: String, [INFO] [stdout] | ^^^^ [INFO] [stdout] 63 | id : u32, [INFO] [stdout] | ^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `print_2d_vec` is never used [INFO] [stdout] --> src/main.rs:193:4 [INFO] [stdout] | [INFO] [stdout] 193 | fn print_2d_vec(matrix : &Vec>){ [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `fitting_alignment` is never used [INFO] [stdout] --> src/main.rs:203:4 [INFO] [stdout] | [INFO] [stdout] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `add` is never used [INFO] [stdout] --> src/main.rs:450:4 [INFO] [stdout] | [INFO] [stdout] 450 | fn add(a : &mut Vec){ [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `gold` is never used [INFO] [stdout] --> src/main.rs:459:4 [INFO] [stdout] | [INFO] [stdout] 459 | fn gold() -> ( [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `CIGAR` should have a snake case name [INFO] [stdout] --> src/main.rs:70:2 [INFO] [stdout] | [INFO] [stdout] 70 | CIGAR : Vec, [INFO] [stdout] | ^^^^^ help: convert the identifier to snake case: `cigar` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:368:2 [INFO] [stdout] | [INFO] [stdout] 368 | file.read_to_end(&mut data); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 368 | let _ = file.read_to_end(&mut data); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `gap` should have an upper case name [INFO] [stdout] --> src/main.rs:384:8 [INFO] [stdout] | [INFO] [stdout] 384 | const gap : usize = 5; [INFO] [stdout] | ^^^ help: convert the identifier to upper case: `GAP` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_upper_case_globals)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `L_col` should have a snake case name [INFO] [stdout] --> src/main.rs:711:10 [INFO] [stdout] | [INFO] [stdout] 711 | let mut L_col = Vec::::new(); [INFO] [stdout] | ^^^^^ help: convert the identifier to snake case: `l_col` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `F_col` should have a snake case name [INFO] [stdout] --> src/main.rs:712:10 [INFO] [stdout] | [INFO] [stdout] 712 | let mut F_col = Vec::::new(); [INFO] [stdout] | ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `F_col_compressed` should have a snake case name [INFO] [stdout] --> src/main.rs:752:10 [INFO] [stdout] | [INFO] [stdout] 752 | let mut F_col_compressed = HashMap::::new(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 25 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 12.36s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: bindgen v0.53.2, nom v5.1.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "54377aabef013db5cb9983d57704cfece1b1ab0acbbf296e2ad652d061a91044", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "54377aabef013db5cb9983d57704cfece1b1ab0acbbf296e2ad652d061a91044", kill_on_drop: false }` [INFO] [stdout] 54377aabef013db5cb9983d57704cfece1b1ab0acbbf296e2ad652d061a91044 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f90999a5d541a4b3a7975c1d8476309d67374fd2bc7dcde7d6a8c517c46268bb [INFO] running `Command { std: "docker" "start" "-a" "f90999a5d541a4b3a7975c1d8476309d67374fd2bc7dcde7d6a8c517c46268bb", kill_on_drop: false }` [INFO] [stderr] Compiling fmmap v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::str::Chars` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::str::Chars; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::iter::Rev` [INFO] [stdout] --> src/main.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use std::iter::Rev; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Aux` [INFO] [stdout] --> src/main.rs:12:45 [INFO] [stdout] | [INFO] [stdout] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar}; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::convert::TryFrom` [INFO] [stdout] --> src/main.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::convert::TryFrom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `thread` and `time` [INFO] [stdout] --> src/main.rs:15:11 [INFO] [stdout] | [INFO] [stdout] 15 | use std::{thread, time}; [INFO] [stdout] | ^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/main.rs:356:3 [INFO] [stdout] | [INFO] [stdout] 356 | }; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:110:7 [INFO] [stdout] | [INFO] [stdout] 110 | let mut c1 = remaining_query.next().unwrap(); [INFO] [stdout] | ----^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed_pos` [INFO] [stdout] --> src/main.rs:392:7 [INFO] [stdout] | [INFO] [stdout] 392 | let seed_pos = 0; [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seqs` [INFO] [stdout] --> src/main.rs:516:16 [INFO] [stdout] | [INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold(); [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seqs` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `quals` [INFO] [stdout] --> src/main.rs:516:22 [INFO] [stdout] | [INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_quals` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `cigars` [INFO] [stdout] --> src/main.rs:516:29 [INFO] [stdout] | [INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold(); [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_cigars` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `name` [INFO] [stdout] --> src/main.rs:532:17 [INFO] [stdout] | [INFO] [stdout] 532 | for name in names.iter() { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sam` [INFO] [stdout] --> src/main.rs:548:13 [INFO] [stdout] | [INFO] [stdout] 548 | let mut sam = Writer::from_path("test123.sam", &header, Format::SAM); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_sam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:548:9 [INFO] [stdout] | [INFO] [stdout] 548 | let mut sam = Writer::from_path("test123.sam", &header, Format::SAM); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:659:6 [INFO] [stdout] | [INFO] [stdout] 659 | let mut sequence = [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:665:11 [INFO] [stdout] | [INFO] [stdout] 665 | let mut sequence = fs::read_to_string(input_file) [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:669:11 [INFO] [stdout] | [INFO] [stdout] 669 | let mut split = sequence.split("\n"); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:792:6 [INFO] [stdout] | [INFO] [stdout] 792 | let mut sequence = [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:796:9 [INFO] [stdout] | [INFO] [stdout] 796 | let mut sequence = fs::read_to_string(input_file) [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:800:9 [INFO] [stdout] | [INFO] [stdout] 800 | let mut split = sequence.split("\n"); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `name` and `id` are never read [INFO] [stdout] --> src/main.rs:62:2 [INFO] [stdout] | [INFO] [stdout] 61 | struct GenRead{ [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] 62 | name: String, [INFO] [stdout] | ^^^^ [INFO] [stdout] 63 | id : u32, [INFO] [stdout] | ^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `print_2d_vec` is never used [INFO] [stdout] --> src/main.rs:193:4 [INFO] [stdout] | [INFO] [stdout] 193 | fn print_2d_vec(matrix : &Vec>){ [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `fitting_alignment` is never used [INFO] [stdout] --> src/main.rs:203:4 [INFO] [stdout] | [INFO] [stdout] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `CIGAR` should have a snake case name [INFO] [stdout] --> src/main.rs:70:2 [INFO] [stdout] | [INFO] [stdout] 70 | CIGAR : Vec, [INFO] [stdout] | ^^^^^ help: convert the identifier to snake case: `cigar` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:368:2 [INFO] [stdout] | [INFO] [stdout] 368 | file.read_to_end(&mut data); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 368 | let _ = file.read_to_end(&mut data); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `gap` should have an upper case name [INFO] [stdout] --> src/main.rs:384:8 [INFO] [stdout] | [INFO] [stdout] 384 | const gap : usize = 5; [INFO] [stdout] | ^^^ help: convert the identifier to upper case: `GAP` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_upper_case_globals)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `L_col` should have a snake case name [INFO] [stdout] --> src/main.rs:711:10 [INFO] [stdout] | [INFO] [stdout] 711 | let mut L_col = Vec::::new(); [INFO] [stdout] | ^^^^^ help: convert the identifier to snake case: `l_col` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `F_col` should have a snake case name [INFO] [stdout] --> src/main.rs:712:10 [INFO] [stdout] | [INFO] [stdout] 712 | let mut F_col = Vec::::new(); [INFO] [stdout] | ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `F_col_compressed` should have a snake case name [INFO] [stdout] --> src/main.rs:752:10 [INFO] [stdout] | [INFO] [stdout] 752 | let mut F_col_compressed = HashMap::::new(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 29 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.40s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: bindgen v0.53.2, nom v5.1.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "f90999a5d541a4b3a7975c1d8476309d67374fd2bc7dcde7d6a8c517c46268bb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f90999a5d541a4b3a7975c1d8476309d67374fd2bc7dcde7d6a8c517c46268bb", kill_on_drop: false }` [INFO] [stdout] f90999a5d541a4b3a7975c1d8476309d67374fd2bc7dcde7d6a8c517c46268bb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] bb5497232ff94b831d170afe96063de59118537685b49027a5e28ae124aecf35 [INFO] running `Command { std: "docker" "start" "-a" "bb5497232ff94b831d170afe96063de59118537685b49027a5e28ae124aecf35", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `std::str::Chars` [INFO] [stderr] --> src/main.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | use std::str::Chars; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::iter::Rev` [INFO] [stderr] --> src/main.rs:9:5 [INFO] [stderr] | [INFO] [stderr] 9 | use std::iter::Rev; [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `Aux` [INFO] [stderr] --> src/main.rs:12:45 [INFO] [stderr] | [INFO] [stderr] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar}; [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::convert::TryFrom` [INFO] [stderr] --> src/main.rs:14:5 [INFO] [stderr] | [INFO] [stderr] 14 | use std::convert::TryFrom; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `thread` and `time` [INFO] [stderr] --> src/main.rs:15:11 [INFO] [stderr] | [INFO] [stderr] 15 | use std::{thread, time}; [INFO] [stderr] | ^^^^^^ ^^^^ [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/main.rs:356:3 [INFO] [stderr] | [INFO] [stderr] 356 | }; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:110:7 [INFO] [stderr] | [INFO] [stderr] 110 | let mut c1 = remaining_query.next().unwrap(); [INFO] [stderr] | ----^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `seed_pos` [INFO] [stderr] --> src/main.rs:392:7 [INFO] [stderr] | [INFO] [stderr] 392 | let seed_pos = 0; [INFO] [stderr] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `seqs` [INFO] [stderr] --> src/main.rs:516:16 [INFO] [stderr] | [INFO] [stderr] 516 | let (names, _, seqs, quals, cigars) = gold(); [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seqs` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `quals` [INFO] [stderr] --> src/main.rs:516:22 [INFO] [stderr] | [INFO] [stderr] 516 | let (names, _, seqs, quals, cigars) = gold(); [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_quals` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `cigars` [INFO] [stderr] --> src/main.rs:516:29 [INFO] [stderr] | [INFO] [stderr] 516 | let (names, _, seqs, quals, cigars) = gold(); [INFO] [stderr] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_cigars` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `name` [INFO] [stderr] --> src/main.rs:532:17 [INFO] [stderr] | [INFO] [stderr] 532 | for name in names.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_name` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `sam` [INFO] [stderr] --> src/main.rs:548:13 [INFO] [stderr] | [INFO] [stderr] 548 | let mut sam = Writer::from_path("test123.sam", &header, Format::SAM); [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_sam` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:548:9 [INFO] [stderr] | [INFO] [stderr] 548 | let mut sam = Writer::from_path("test123.sam", &header, Format::SAM); [INFO] [stderr] | ----^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:659:6 [INFO] [stderr] | [INFO] [stderr] 659 | let mut sequence = [INFO] [stderr] | ----^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:665:11 [INFO] [stderr] | [INFO] [stderr] 665 | let mut sequence = fs::read_to_string(input_file) [INFO] [stderr] | ----^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:669:11 [INFO] [stderr] | [INFO] [stderr] 669 | let mut split = sequence.split("\n"); [INFO] [stderr] | ----^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:792:6 [INFO] [stderr] | [INFO] [stderr] 792 | let mut sequence = [INFO] [stderr] | ----^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:796:9 [INFO] [stderr] | [INFO] [stderr] 796 | let mut sequence = fs::read_to_string(input_file) [INFO] [stderr] | ----^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:800:9 [INFO] [stderr] | [INFO] [stderr] 800 | let mut split = sequence.split("\n"); [INFO] [stderr] | ----^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: fields `name` and `id` are never read [INFO] [stderr] --> src/main.rs:62:2 [INFO] [stderr] | [INFO] [stderr] 61 | struct GenRead{ [INFO] [stderr] | ------- fields in this struct [INFO] [stderr] 62 | name: String, [INFO] [stderr] | ^^^^ [INFO] [stderr] 63 | id : u32, [INFO] [stderr] | ^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function `print_2d_vec` is never used [INFO] [stderr] --> src/main.rs:193:4 [INFO] [stderr] | [INFO] [stderr] 193 | fn print_2d_vec(matrix : &Vec>){ [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `fitting_alignment` is never used [INFO] [stderr] --> src/main.rs:203:4 [INFO] [stderr] | [INFO] [stderr] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: structure field `CIGAR` should have a snake case name [INFO] [stderr] --> src/main.rs:70:2 [INFO] [stderr] | [INFO] [stderr] 70 | CIGAR : Vec, [INFO] [stderr] | ^^^^^ help: convert the identifier to snake case: `cigar` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:368:2 [INFO] [stderr] | [INFO] [stderr] 368 | file.read_to_end(&mut data); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] help: use `let _ = ...` to ignore the resulting value [INFO] [stderr] | [INFO] [stderr] 368 | let _ = file.read_to_end(&mut data); [INFO] [stderr] | +++++++ [INFO] [stderr] [INFO] [stderr] warning: constant `gap` should have an upper case name [INFO] [stderr] --> src/main.rs:384:8 [INFO] [stderr] | [INFO] [stderr] 384 | const gap : usize = 5; [INFO] [stderr] | ^^^ help: convert the identifier to upper case: `GAP` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_upper_case_globals)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `L_col` should have a snake case name [INFO] [stderr] --> src/main.rs:711:10 [INFO] [stderr] | [INFO] [stderr] 711 | let mut L_col = Vec::::new(); [INFO] [stderr] | ^^^^^ help: convert the identifier to snake case: `l_col` [INFO] [stderr] [INFO] [stderr] warning: variable `F_col` should have a snake case name [INFO] [stderr] --> src/main.rs:712:10 [INFO] [stderr] | [INFO] [stderr] 712 | let mut F_col = Vec::::new(); [INFO] [stderr] | ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col` [INFO] [stderr] [INFO] [stderr] warning: variable `F_col_compressed` should have a snake case name [INFO] [stderr] --> src/main.rs:752:10 [INFO] [stderr] | [INFO] [stderr] 752 | let mut F_col_compressed = HashMap::::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed` [INFO] [stderr] [INFO] [stderr] warning: `fmmap` (bin "fmmap" test) generated 29 warnings (run `cargo fix --bin "fmmap" --tests` to apply 13 suggestions) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: bindgen v0.53.2, nom v5.1.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/fmmap-2d0b6a462ada21e7) [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test test_borrow ... ok [INFO] [stderr] [E::hts_open_format] Failed to open file "yeet.sam" : Read-only file system [INFO] [stdout] test test_fitting_alignment2 ... ok [INFO] [stderr] [E::hts_open_format] Failed to open file "test123.sam" : Read-only file system [INFO] [stdout] test test_write_sam2 ... ok [INFO] [stdout] test test_write_sam ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_write_sam stdout ---- [INFO] [stdout] thread 'test_write_sam' panicked at src/main.rs:530:14: [INFO] [stdout] Error opening file. [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5bceb124c22a - std::backtrace_rs::backtrace::libunwind::trace::hb26ad70b37260289 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5 [INFO] [stdout] 1: 0x5bceb124c22a - std::backtrace_rs::backtrace::trace_unsynchronized::h2c0187153633e231 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x5bceb124c22a - std::sys::backtrace::_print_fmt::ha9596eb1af5e3a29 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x5bceb124c22a - ::fmt::h8f2981dcab006960 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x5bceb127253b - core::fmt::rt::Argument::fmt::h1029a118dbae0125 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/core/src/fmt/rt.rs:177:76 [INFO] [stdout] 5: 0x5bceb127253b - core::fmt::write::h25ada94a2189c1b9 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/core/src/fmt/mod.rs:1178:21 [INFO] [stdout] 6: 0x5bceb1248f23 - std::io::Write::write_fmt::h6ca394d5de12dd64 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/io/mod.rs:1823:15 [INFO] [stdout] 7: 0x5bceb124c072 - std::sys::backtrace::BacktraceLock::print::hc25a90d456c1b686 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 8: 0x5bceb124d9a5 - std::panicking::default_hook::{{closure}}::h73dd81cb71929aa4 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/panicking.rs:268:22 [INFO] [stdout] 9: 0x5bceb124d798 - std::panicking::default_hook::h0e337668e919fc53 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/panicking.rs:292:9 [INFO] [stdout] 10: 0x5bceb11b7899 - as core::ops::function::Fn>::call::h0a5b2697e83d3de2 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/alloc/src/boxed.rs:2243:9 [INFO] [stdout] 11: 0x5bceb11b7899 - test::test_main::{{closure}}::ha5c571fce018b26f [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/test/src/lib.rs:132:21 [INFO] [stdout] 12: 0x5bceb124e0b8 - as core::ops::function::Fn>::call::h41d416f4073097a8 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/alloc/src/boxed.rs:2243:9 [INFO] [stdout] 13: 0x5bceb124e0b8 - std::panicking::rust_panic_with_hook::h442c26b690a626f4 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/panicking.rs:809:13 [INFO] [stdout] 14: 0x5bceb124de87 - std::panicking::begin_panic_handler::{{closure}}::h7cfa3ab758eb5a73 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/panicking.rs:674:13 [INFO] [stdout] 15: 0x5bceb124c709 - std::sys::backtrace::__rust_end_short_backtrace::hf609a1dcd6f8b9f9 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/sys/backtrace.rs:170:18 [INFO] [stdout] 16: 0x5bceb124db14 - rust_begin_unwind [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/panicking.rs:665:5 [INFO] [stdout] 17: 0x5bceb1270f43 - core::panicking::panic_fmt::he4002baf06927918 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/core/src/panicking.rs:74:14 [INFO] [stdout] 18: 0x5bceb1270f0b - core::panicking::panic_display::haabd6b6701022131 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/core/src/panicking.rs:264:5 [INFO] [stdout] 19: 0x5bceb1270f0b - core::option::expect_failed::h7adb6a1f0ac66dec [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/core/src/option.rs:2024:5 [INFO] [stdout] 20: 0x5bceb117c479 - core::option::Option::expect::h149bc3ea1a36702d [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/core/src/option.rs:928:21 [INFO] [stdout] 21: 0x5bceb117950a - fmmap::test_write_sam::h9d7eacc38e2aa841 [INFO] [stdout] at /opt/rustwide/workdir/src/main.rs:519:27 [INFO] [stdout] 22: 0x5bceb11791e7 - fmmap::test_write_sam::{{closure}}::h26ee3cab5f423a2e [INFO] [stdout] at /opt/rustwide/workdir/src/main.rs:514:20 [INFO] [stdout] 23: 0x5bceb117acc6 - core::ops::function::FnOnce::call_once::hba47c1ad06c088e3 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x5bceb11bc20b - core::ops::function::FnOnce::call_once::he9dcba90b82d8683 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x5bceb11bc20b - test::__rust_begin_short_backtrace::hd3c7d260f12c8c4c [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/test/src/lib.rs:620:18 [INFO] [stdout] 26: 0x5bceb11bba88 - test::run_test_in_process::{{closure}}::h2a83a0a65ed3c222 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/test/src/lib.rs:643:60 [INFO] [stdout] 27: 0x5bceb11bba88 - as core::ops::function::FnOnce<()>>::call_once::h86af6a43b3d339fd [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x5bceb11bba88 - std::panicking::try::do_call::h06bb3a6ef41e33d4 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/panicking.rs:557:40 [INFO] [stdout] 29: 0x5bceb11bba88 - std::panicking::try::hbe4ce21e81168e19 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/panicking.rs:520:19 [INFO] [stdout] 30: 0x5bceb11bba88 - std::panic::catch_unwind::h9216a5b93914ba30 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/panic.rs:345:14 [INFO] [stdout] 31: 0x5bceb11bba88 - test::run_test_in_process::hd5f710dbb42ac3ac [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/test/src/lib.rs:643:27 [INFO] [stdout] 32: 0x5bceb11bba88 - test::run_test::{{closure}}::ha3c5aa83f018eb90 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/test/src/lib.rs:564:43 [INFO] [stdout] 33: 0x5bceb117fd84 - test::run_test::{{closure}}::h106c33754fb7ad93 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/test/src/lib.rs:594:41 [INFO] [stdout] 34: 0x5bceb117fd84 - std::sys::backtrace::__rust_begin_short_backtrace::h72b607f200d489e1 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/sys/backtrace.rs:154:18 [INFO] [stdout] 35: 0x5bceb11834d2 - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h4c13dee51575b1d5 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/thread/mod.rs:522:17 [INFO] [stdout] 36: 0x5bceb11834d2 - as core::ops::function::FnOnce<()>>::call_once::hc15ba15cced82411 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x5bceb11834d2 - std::panicking::try::do_call::ha2b96a5442f2b7a6 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/panicking.rs:557:40 [INFO] [stdout] 38: 0x5bceb11834d2 - std::panicking::try::h3249b845d1609c7f [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/panicking.rs:520:19 [INFO] [stdout] 39: 0x5bceb11834d2 - std::panic::catch_unwind::hb1234c1714481772 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/panic.rs:345:14 [INFO] [stdout] 40: 0x5bceb11834d2 - std::thread::Builder::spawn_unchecked_::{{closure}}::hf2ecca2087a712d7 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/thread/mod.rs:521:30 [INFO] [stdout] 41: 0x5bceb11834d2 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h33604033fff0c135 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x5bceb125214b - as core::ops::function::FnOnce>::call_once::hed0705102829bfb8 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/alloc/src/boxed.rs:2229:9 [INFO] [stdout] 43: 0x5bceb125214b - as core::ops::function::FnOnce>::call_once::h88dbb0360840e1a3 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/alloc/src/boxed.rs:2229:9 [INFO] [stdout] 44: 0x5bceb125214b - std::sys::pal::unix::thread::Thread::new::thread_start::hed3d760d9bfb1ad1 [INFO] [stdout] at /rustc/8c0ec05f7dc9ef185eea9f36c5638e74e43935bf/library/std/src/sys/pal/unix/thread.rs:105:17 [INFO] [stdout] 45: 0x7b8b0c4b7ac3 - [INFO] [stdout] 46: 0x7b8b0c548a04 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_write_sam [INFO] [stdout] [INFO] [stdout] test result: FAILED. 3 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--bin fmmap` [INFO] running `Command { std: "docker" "inspect" "bb5497232ff94b831d170afe96063de59118537685b49027a5e28ae124aecf35", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bb5497232ff94b831d170afe96063de59118537685b49027a5e28ae124aecf35", kill_on_drop: false }` [INFO] [stdout] bb5497232ff94b831d170afe96063de59118537685b49027a5e28ae124aecf35