[INFO] cloning repository https://github.com/ARU-life-sciences/hmm_tblout [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/hmm_tblout" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fhmm_tblout", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fhmm_tblout'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 85b9ca67067878e63880fdaf94f30c0b0686e88b [INFO] testing ARU-life-sciences/hmm_tblout/85b9ca67067878e63880fdaf94f30c0b0686e88b against master#8c0ec05f7dc9ef185eea9f36c5638e74e43935bf for pr-130285 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fhmm_tblout" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/ARU-life-sciences/hmm_tblout on toolchain 8c0ec05f7dc9ef185eea9f36c5638e74e43935bf [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/ARU-life-sciences/hmm_tblout [INFO] finished tweaking git repo https://github.com/ARU-life-sciences/hmm_tblout [INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/hmm_tblout written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/ARU-life-sciences/hmm_tblout already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 69d746257a2c6156e1f27599a3439da1486f70da1ffd9a34db2dd7e25f711f60 [INFO] running `Command { std: "docker" "start" "-a" "69d746257a2c6156e1f27599a3439da1486f70da1ffd9a34db2dd7e25f711f60", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "69d746257a2c6156e1f27599a3439da1486f70da1ffd9a34db2dd7e25f711f60", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "69d746257a2c6156e1f27599a3439da1486f70da1ffd9a34db2dd7e25f711f60", kill_on_drop: false }` [INFO] [stdout] 69d746257a2c6156e1f27599a3439da1486f70da1ffd9a34db2dd7e25f711f60 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a7348fe190f480354a04999449d7a3d84da6c491af50fc1f61038ec3f9ab4d0d [INFO] running `Command { std: "docker" "start" "-a" "a7348fe190f480354a04999449d7a3d84da6c491af50fc1f61038ec3f9ab4d0d", kill_on_drop: false }` [INFO] [stderr] Compiling hmm_tblout v0.2.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.31s [INFO] running `Command { std: "docker" "inspect" "a7348fe190f480354a04999449d7a3d84da6c491af50fc1f61038ec3f9ab4d0d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a7348fe190f480354a04999449d7a3d84da6c491af50fc1f61038ec3f9ab4d0d", kill_on_drop: false }` [INFO] [stdout] a7348fe190f480354a04999449d7a3d84da6c491af50fc1f61038ec3f9ab4d0d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 242973779b38262495f5a113a80064b0377c95bdd5056282b35f8ce7d99e7412 [INFO] running `Command { std: "docker" "start" "-a" "242973779b38262495f5a113a80064b0377c95bdd5056282b35f8ce7d99e7412", kill_on_drop: false }` [INFO] [stderr] Compiling hmm_tblout v0.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: constant `NHMMSCAN_FILE` is never used [INFO] [stdout] --> src/lib.rs:136:11 [INFO] [stdout] | [INFO] [stdout] 136 | const NHMMSCAN_FILE: &str = "# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom ... [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `HMMSCAN_FILE` is never used [INFO] [stdout] --> src/lib.rs:157:11 [INFO] [stdout] | [INFO] [stdout] 157 | const HMMSCAN_FILE: &str = "# --- full sequence ---- --- best 1 domain ... [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `HMMSEARCH_FILE` is never used [INFO] [stdout] --> src/lib.rs:185:11 [INFO] [stdout] | [INFO] [stdout] 185 | const HMMSEARCH_FILE: &str = "# --- full sequence ---- --- best 1 domai... [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.45s [INFO] running `Command { std: "docker" "inspect" "242973779b38262495f5a113a80064b0377c95bdd5056282b35f8ce7d99e7412", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "242973779b38262495f5a113a80064b0377c95bdd5056282b35f8ce7d99e7412", kill_on_drop: false }` [INFO] [stdout] 242973779b38262495f5a113a80064b0377c95bdd5056282b35f8ce7d99e7412 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+8c0ec05f7dc9ef185eea9f36c5638e74e43935bf" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 60c84de8e9c6ca555571172c004fc0dbd91c1e6524c6fe4bc3928cfb41b14433 [INFO] running `Command { std: "docker" "start" "-a" "60c84de8e9c6ca555571172c004fc0dbd91c1e6524c6fe4bc3928cfb41b14433", kill_on_drop: false }` [INFO] [stderr] warning: constant `NHMMSCAN_FILE` is never used [INFO] [stderr] --> src/lib.rs:136:11 [INFO] [stderr] | [INFO] [stderr] 136 | const NHMMSCAN_FILE: &str = "# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom ... [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: constant `HMMSCAN_FILE` is never used [INFO] [stderr] --> src/lib.rs:157:11 [INFO] [stderr] | [INFO] [stderr] 157 | const HMMSCAN_FILE: &str = "# --- full sequence ---- --- best 1 domain ... [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: constant `HMMSEARCH_FILE` is never used [INFO] [stderr] --> src/lib.rs:185:11 [INFO] [stderr] | [INFO] [stderr] 185 | const HMMSEARCH_FILE: &str = "# --- full sequence ---- --- best 1 domai... [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `hmm_tblout` (lib test) generated 3 warnings [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.01s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/hmm_tblout-cdde539c44ddd996) [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test tests::test_jackhmmer_records ... ok [INFO] [stdout] test tests::test_jackhmmer_meta ... ok [INFO] [stdout] test tests::test_phmmer_records ... ok [INFO] [stdout] test tests::test_meta ... ok [INFO] [stdout] test tests::test_whole_file ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests hmm_tblout [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - (line 7) - compile ... FAILED [INFO] [stdout] [INFO] [stderr] error: doctest failed, to rerun pass `--doc` [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/lib.rs - (line 7) stdout ---- [INFO] [stdout] error[E0254]: the name `hmm_tblout` is defined multiple times [INFO] [stdout] --> src/lib.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 3 | extern crate r#hmm_tblout; [INFO] [stdout] | -------------------------- previous import of the extern crate `hmm_tblout` here [INFO] [stdout] 4 | use hmm_tblout; [INFO] [stdout] | ^^^^^^^^^^ `hmm_tblout` reimported here [INFO] [stdout] | [INFO] [stdout] = note: `hmm_tblout` must be defined only once in the type namespace of this module [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0254`. [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/lib.rs - (line 7) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "60c84de8e9c6ca555571172c004fc0dbd91c1e6524c6fe4bc3928cfb41b14433", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "60c84de8e9c6ca555571172c004fc0dbd91c1e6524c6fe4bc3928cfb41b14433", kill_on_drop: false }` [INFO] [stdout] 60c84de8e9c6ca555571172c004fc0dbd91c1e6524c6fe4bc3928cfb41b14433