[INFO] fetching crate exon-py 0.11.0... [INFO] checking exon-py-0.11.0 against master#38352b01ae4af9300be03b805d6db68c45e51068 for pr-129864 [INFO] extracting crate exon-py 0.11.0 into /workspace/builds/worker-2-tc1/source [INFO] validating manifest of crates.io crate exon-py 0.11.0 on toolchain 38352b01ae4af9300be03b805d6db68c45e51068 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+38352b01ae4af9300be03b805d6db68c45e51068" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate exon-py 0.11.0 [INFO] finished tweaking crates.io crate exon-py 0.11.0 [INFO] tweaked toml for crates.io crate exon-py 0.11.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+38352b01ae4af9300be03b805d6db68c45e51068" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 395 packages to latest compatible versions [INFO] [stderr] Adding arrow v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-arith v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-array v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-buffer v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-cast v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-csv v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-data v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-ipc v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-json v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-ord v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-row v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-schema v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-select v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding arrow-string v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding base64 v0.21.7 (available: v0.22.1) [INFO] [stderr] Adding bit-vec v0.6.3 (available: v0.8.0) [INFO] [stderr] Adding bitflags v1.3.2 (available: v2.6.0) [INFO] [stderr] Adding brotli v3.5.0 (available: v6.0.0) [INFO] [stderr] Adding brotli-decompressor v2.5.1 (available: v4.0.1) [INFO] [stderr] Adding chrono-tz v0.8.6 (available: v0.10.0) [INFO] [stderr] Adding chrono-tz-build v0.2.1 (available: v0.4.0) [INFO] [stderr] Adding core-foundation v0.9.4 (available: v0.10.0) [INFO] [stderr] Adding dashmap v5.5.3 (available: v6.1.0) [INFO] [stderr] Adding datafusion v36.0.0 (available: v42.0.0) [INFO] [stderr] Adding datafusion-common v36.0.0 (available: v42.0.0) [INFO] [stderr] Adding datafusion-execution v36.0.0 (available: v42.0.0) [INFO] [stderr] Adding datafusion-expr v36.0.0 (available: v42.0.0) [INFO] [stderr] Adding datafusion-functions v36.0.0 (available: v42.0.0) [INFO] [stderr] Adding datafusion-functions-array v36.0.0 (available: v40.0.0) [INFO] [stderr] Adding datafusion-optimizer v36.0.0 (available: v42.0.0) [INFO] [stderr] Adding datafusion-physical-expr v36.0.0 (available: v42.0.0) [INFO] [stderr] Adding datafusion-physical-plan v36.0.0 (available: v42.0.0) [INFO] [stderr] Adding datafusion-sql v36.0.0 (available: v42.0.0) [INFO] [stderr] Adding exon v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-bam v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-bcf v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-bed v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-common v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-fasta v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-fastq v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-fcs v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-genbank v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-gff v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-gtf v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-io v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-mzml v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-sam v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding exon-vcf v0.11.1 (available: v0.32.2) [INFO] [stderr] Adding fixedbitset v0.4.2 (available: v0.5.7) [INFO] [stderr] Adding flatbuffers v23.5.26 (available: v24.3.25) [INFO] [stderr] Adding generic-array v0.14.7 (available: v1.1.0) [INFO] [stderr] Adding h2 v0.3.26 (available: v0.4.6) [INFO] [stderr] Adding heck v0.4.1 (available: v0.5.0) [INFO] [stderr] Adding hermit-abi v0.3.9 (available: v0.4.0) [INFO] [stderr] Adding http v0.2.12 (available: v1.1.0) [INFO] [stderr] Adding http-body v0.4.6 (available: v1.0.1) [INFO] [stderr] Adding hyper v0.14.30 (available: v1.4.1) [INFO] [stderr] Adding hyper-rustls v0.24.2 (available: v0.27.3) [INFO] [stderr] Adding idna v0.5.0 (available: v1.0.2) [INFO] [stderr] Adding integer-encoding v3.0.4 (available: v4.0.2) [INFO] [stderr] Adding itertools v0.10.5 (available: v0.13.0) [INFO] [stderr] Adding itertools v0.12.1 (available: v0.13.0) [INFO] [stderr] Adding lexical-core v0.8.5 (available: v1.0.2) [INFO] [stderr] Adding lexical-parse-float v0.8.5 (available: v1.0.2) [INFO] [stderr] Adding lexical-parse-integer v0.8.6 (available: v1.0.2) [INFO] [stderr] Adding lexical-util v0.8.5 (available: v1.0.3) [INFO] [stderr] Adding lexical-write-float v0.8.5 (available: v1.0.2) [INFO] [stderr] Adding lexical-write-integer v0.8.5 (available: v1.0.2) [INFO] [stderr] Adding linux-raw-sys v0.4.14 (available: v0.6.5) [INFO] [stderr] Adding nom v4.2.3 (available: v7.1.3) [INFO] [stderr] Adding noodles v0.65.0 (available: v0.82.0) [INFO] [stderr] Adding noodles-bam v0.56.0 (available: v0.67.0) [INFO] [stderr] Adding noodles-bcf v0.46.0 (available: v0.61.0) [INFO] [stderr] Adding noodles-bed v0.12.0 (available: v0.16.0) [INFO] [stderr] Adding noodles-bgzf v0.26.0 (available: v0.33.0) [INFO] [stderr] Adding noodles-core v0.14.0 (available: v0.15.0) [INFO] [stderr] Adding noodles-cram v0.56.0 (available: v0.68.0) [INFO] [stderr] Adding noodles-csi v0.30.0 (available: v0.38.0) [INFO] [stderr] Adding noodles-fasta v0.33.0 (available: v0.43.0) [INFO] [stderr] Adding noodles-fastq v0.10.0 (available: v0.14.0) [INFO] [stderr] Adding noodles-gff v0.27.0 (available: v0.37.0) [INFO] [stderr] Adding noodles-gtf v0.23.0 (available: v0.32.0) [INFO] [stderr] Adding noodles-sam v0.53.0 (available: v0.64.0) [INFO] [stderr] Adding noodles-tabix v0.36.0 (available: v0.44.0) [INFO] [stderr] Adding noodles-vcf v0.49.0 (available: v0.65.0) [INFO] [stderr] Adding nu-ansi-term v0.46.0 (available: v0.50.1) [INFO] [stderr] Adding object_store v0.9.1 (available: v0.11.0) [INFO] [stderr] Adding ordered-float v2.10.1 (available: v4.3.0) [INFO] [stderr] Adding parquet v50.0.0 (available: v53.0.0) [INFO] [stderr] Adding phf_generator v0.10.0 (available: v0.11.2) [INFO] [stderr] Adding phf_shared v0.10.0 (available: v0.11.2) [INFO] [stderr] Adding pyo3 v0.20.3 (available: v0.22.3) [INFO] [stderr] Adding pyo3-build-config v0.20.3 (available: v0.22.3) [INFO] [stderr] Adding pyo3-ffi v0.20.3 (available: v0.22.3) [INFO] [stderr] Adding pyo3-macros v0.20.3 (available: v0.22.3) [INFO] [stderr] Adding pyo3-macros-backend v0.20.3 (available: v0.22.3) [INFO] [stderr] Adding quick-xml v0.31.0 (available: v0.36.2) [INFO] [stderr] Adding reqwest v0.11.27 (available: v0.12.7) [INFO] [stderr] Adding rustls v0.21.12 (available: v0.23.13) [INFO] [stderr] Adding rustls-native-certs v0.6.3 (available: v0.8.0) [INFO] [stderr] Adding rustls-pemfile v1.0.4 (available: v2.1.3) [INFO] [stderr] Adding rustls-webpki v0.101.7 (available: v0.102.8) [INFO] [stderr] Adding security-framework v2.11.1 (available: v3.0.0) [INFO] [stderr] Adding siphasher v0.3.11 (available: v1.0.1) [INFO] [stderr] Adding snafu v0.7.5 (available: v0.8.5) [INFO] [stderr] Adding snafu-derive v0.7.5 (available: v0.8.5) [INFO] [stderr] Adding sqlparser v0.43.1 (available: v0.51.0) [INFO] [stderr] Adding syn v1.0.109 (available: v2.0.77) [INFO] [stderr] Adding sync_wrapper v0.1.2 (available: v1.0.1) [INFO] [stderr] Adding synstructure v0.12.6 (available: v0.13.1) [INFO] [stderr] Adding system-configuration v0.5.1 (available: v0.6.1) [INFO] [stderr] Adding system-configuration-sys v0.5.0 (available: v0.6.0) [INFO] [stderr] Adding tokio-rustls v0.24.1 (available: v0.26.0) [INFO] [stderr] Adding unicode-width v0.1.14 (available: v0.2.0) [INFO] [stderr] Adding version_check v0.1.5 (available: v0.9.5) [INFO] [stderr] Adding wasi v0.11.0+wasi-snapshot-preview1 (available: v0.13.2+wasi-0.2.1) [INFO] [stderr] Adding windows-core v0.52.0 (available: v0.58.0) [INFO] [stderr] Adding windows-sys v0.48.0 (available: v0.59.0) [INFO] [stderr] Adding windows-sys v0.52.0 (available: v0.59.0) [INFO] [stderr] Adding windows-targets v0.48.5 (available: v0.52.6) [INFO] [stderr] Adding windows_aarch64_gnullvm v0.48.5 (available: v0.52.6) [INFO] [stderr] Adding windows_aarch64_msvc v0.48.5 (available: v0.52.6) [INFO] [stderr] Adding windows_i686_gnu v0.48.5 (available: v0.52.6) [INFO] [stderr] Adding windows_i686_msvc v0.48.5 (available: v0.52.6) [INFO] [stderr] Adding windows_x86_64_gnu v0.48.5 (available: v0.52.6) [INFO] [stderr] Adding windows_x86_64_gnullvm v0.48.5 (available: v0.52.6) [INFO] [stderr] Adding windows_x86_64_msvc v0.48.5 (available: v0.52.6) [INFO] [stderr] Adding winreg v0.50.0 (available: v0.52.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+38352b01ae4af9300be03b805d6db68c45e51068" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-macros v0.20.3 [INFO] [stderr] Downloaded snafu v0.7.5 [INFO] [stderr] Downloaded exon-bed v0.11.1 [INFO] [stderr] Downloaded exon-fastq v0.11.1 [INFO] [stderr] Downloaded exon-gff v0.11.1 [INFO] [stderr] Downloaded exon-fasta v0.11.1 [INFO] [stderr] Downloaded pyo3-build-config v0.20.3 [INFO] [stderr] Downloaded exon-bam v0.11.1 [INFO] [stderr] Downloaded gb-io v0.7.1 [INFO] [stderr] Downloaded exon-genbank v0.11.1 [INFO] [stderr] Downloaded blake2 v0.10.6 [INFO] [stderr] Downloaded err-derive v0.3.1 [INFO] [stderr] Downloaded nom v4.2.3 [INFO] [stderr] Downloaded arrow-array v50.0.0 [INFO] [stderr] Downloaded datafusion-optimizer v36.0.0 [INFO] [stderr] Downloaded lexical-parse-float v0.8.5 [INFO] [stderr] Downloaded libdeflate-sys v1.21.0 [INFO] [stderr] Downloaded datafusion-physical-expr v36.0.0 [INFO] [stderr] Downloaded datafusion-physical-plan v36.0.0 [INFO] [stderr] Downloaded parquet v50.0.0 [INFO] [stderr] Downloaded exon-bcf v0.11.1 [INFO] [stderr] Downloaded datafusion-functions-array v36.0.0 [INFO] [stderr] Downloaded exon-common v0.11.1 [INFO] [stderr] Downloaded noodles-bcf v0.46.0 [INFO] [stderr] Downloaded exon v0.11.1 [INFO] [stderr] Downloaded datafusion v36.0.0 [INFO] [stderr] Downloaded pyo3 v0.20.3 [INFO] [stderr] Downloaded datafusion-expr v36.0.0 [INFO] [stderr] Downloaded sqlparser v0.43.1 [INFO] [stderr] Downloaded object_store v0.9.1 [INFO] [stderr] Downloaded noodles-cram v0.56.0 [INFO] [stderr] Downloaded datafusion-common v36.0.0 [INFO] [stderr] Downloaded parse-zoneinfo v0.3.1 [INFO] [stderr] Downloaded lexical-write-float v0.8.5 [INFO] [stderr] Downloaded noodles-sam v0.53.0 [INFO] [stderr] Downloaded arrow v50.0.0 [INFO] [stderr] Downloaded datafusion-sql v36.0.0 [INFO] [stderr] Downloaded arrow-cast v50.0.0 [INFO] [stderr] Downloaded noodles-vcf v0.49.0 [INFO] [stderr] Downloaded arrow-ipc v50.0.0 [INFO] [stderr] Downloaded arrow-buffer v50.0.0 [INFO] [stderr] Downloaded noodles-bam v0.56.0 [INFO] [stderr] Downloaded lexical-util v0.8.5 [INFO] [stderr] Downloaded lexical-write-integer v0.8.5 [INFO] [stderr] Downloaded pyo3-ffi v0.20.3 [INFO] [stderr] Downloaded arrow-arith v50.0.0 [INFO] [stderr] Downloaded arrow-csv v50.0.0 [INFO] [stderr] Downloaded arrow-json v50.0.0 [INFO] [stderr] Downloaded arrow-ord v50.0.0 [INFO] [stderr] Downloaded arrow-data v50.0.0 [INFO] [stderr] Downloaded arrow-schema v50.0.0 [INFO] [stderr] Downloaded arrow-select v50.0.0 [INFO] [stderr] Downloaded thrift v0.17.0 [INFO] [stderr] Downloaded noodles-bed v0.12.0 [INFO] [stderr] Downloaded libdeflater v1.21.0 [INFO] [stderr] Downloaded snafu-derive v0.7.5 [INFO] [stderr] Downloaded exon-mzml v0.11.1 [INFO] [stderr] Downloaded datafusion-functions v36.0.0 [INFO] [stderr] Downloaded datafusion-execution v36.0.0 [INFO] [stderr] Downloaded exon-vcf v0.11.1 [INFO] [stderr] Downloaded lexical-core v0.8.5 [INFO] [stderr] Downloaded noodles-csi v0.30.0 [INFO] [stderr] Downloaded noodles-tabix v0.36.0 [INFO] [stderr] Downloaded noodles v0.65.0 [INFO] [stderr] Downloaded noodles-bgzf v0.26.0 [INFO] [stderr] Downloaded exon-gtf v0.11.1 [INFO] [stderr] Downloaded exon-sam v0.11.1 [INFO] [stderr] Downloaded arrow-row v50.0.0 [INFO] [stderr] Downloaded arrow-string v50.0.0 [INFO] [stderr] Downloaded num v0.4.3 [INFO] [stderr] Downloaded noodles-fasta v0.33.0 [INFO] [stderr] Downloaded noodles-gff v0.27.0 [INFO] [stderr] Downloaded lexical-parse-integer v0.8.6 [INFO] [stderr] Downloaded noodles-gtf v0.23.0 [INFO] [stderr] Downloaded integer-encoding v3.0.4 [INFO] [stderr] Downloaded sqlparser_derive v0.2.2 [INFO] [stderr] Downloaded zstd-safe v7.2.1 [INFO] [stderr] Downloaded noodles-fastq v0.10.0 [INFO] [stderr] Downloaded pyo3-macros-backend v0.20.3 [INFO] [stderr] Downloaded circular v0.3.0 [INFO] [stderr] Downloaded version_check v0.1.5 [INFO] [stderr] Downloaded exon-io v0.11.1 [INFO] [stderr] Downloaded noodles-core v0.14.0 [INFO] [stderr] Downloaded exon-fcs v0.11.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+38352b01ae4af9300be03b805d6db68c45e51068" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e662dde81a1accf7de223d8783728c8ea22f3a47bd0283c2d421044e4f6b1c5e [INFO] running `Command { std: "docker" "start" "-a" "e662dde81a1accf7de223d8783728c8ea22f3a47bd0283c2d421044e4f6b1c5e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e662dde81a1accf7de223d8783728c8ea22f3a47bd0283c2d421044e4f6b1c5e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e662dde81a1accf7de223d8783728c8ea22f3a47bd0283c2d421044e4f6b1c5e", kill_on_drop: false }` [INFO] [stdout] e662dde81a1accf7de223d8783728c8ea22f3a47bd0283c2d421044e4f6b1c5e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+38352b01ae4af9300be03b805d6db68c45e51068" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b6461a34a3c2af3ae37352e0081988b6b3c21e35be4e12388d7aecde0c087156 [INFO] running `Command { std: "docker" "start" "-a" "b6461a34a3c2af3ae37352e0081988b6b3c21e35be4e12388d7aecde0c087156", kill_on_drop: false }` [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Compiling libc v0.2.159 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Checking tokio v1.40.0 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling siphasher v0.3.11 [INFO] [stderr] Checking serde v1.0.210 [INFO] [stderr] Checking tracing-core v0.1.32 [INFO] [stderr] Checking futures-util v0.3.30 [INFO] [stderr] Compiling phf_shared v0.11.2 [INFO] [stderr] Checking bitflags v2.6.0 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Compiling cc v1.1.21 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Checking tracing v0.1.40 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Checking indexmap v2.5.0 [INFO] [stderr] Checking num-bigint v0.4.6 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling phf v0.11.2 [INFO] [stderr] Checking num-iter v0.1.45 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Compiling ring v0.17.8 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Compiling phf_generator v0.11.2 [INFO] [stderr] Compiling phf_codegen v0.11.2 [INFO] [stderr] Checking lexical-util v0.8.5 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking chrono v0.4.38 [INFO] [stderr] Checking half v2.4.1 [INFO] [stderr] Checking futures-executor v0.3.30 [INFO] [stderr] Checking num v0.4.3 [INFO] [stderr] Checking futures v0.3.30 [INFO] [stderr] Compiling rustls v0.21.12 [INFO] [stderr] Compiling target-lexicon v0.12.16 [INFO] [stderr] Checking arrow-buffer v50.0.0 [INFO] [stderr] Checking arrow-schema v50.0.0 [INFO] [stderr] Checking lexical-parse-integer v0.8.6 [INFO] [stderr] Checking arrow-data v50.0.0 [INFO] [stderr] Compiling pyo3-build-config v0.20.3 [INFO] [stderr] Checking lexical-write-integer v0.8.5 [INFO] [stderr] Checking lexical-parse-float v0.8.5 [INFO] [stderr] Checking lexical-write-float v0.8.5 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking tokio-util v0.7.12 [INFO] [stderr] Compiling regex v1.10.6 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Checking lexical-core v0.8.5 [INFO] [stderr] Compiling zstd-sys v2.0.13+zstd.1.5.6 [INFO] [stderr] Compiling parse-zoneinfo v0.3.1 [INFO] [stderr] Checking h2 v0.3.26 [INFO] [stderr] Checking serde_json v1.0.128 [INFO] [stderr] Compiling chrono-tz-build v0.2.1 [INFO] [stderr] Compiling pyo3-ffi v0.20.3 [INFO] [stderr] Compiling flatbuffers v23.5.26 [INFO] [stderr] Compiling chrono-tz v0.8.6 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling zstd-safe v7.2.1 [INFO] [stderr] Checking serde_urlencoded v0.7.1 [INFO] [stderr] Checking twox-hash v1.6.3 [INFO] [stderr] Checking sct v0.7.1 [INFO] [stderr] Checking rustls-webpki v0.101.7 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking comfy-table v7.1.1 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Checking alloc-no-stdlib v2.0.4 [INFO] [stderr] Checking alloc-stdlib v0.2.2 [INFO] [stderr] Checking lz4_flex v0.11.3 [INFO] [stderr] Compiling pyo3 v0.20.3 [INFO] [stderr] Compiling pyo3-macros-backend v0.20.3 [INFO] [stderr] Checking hyper v0.14.30 [INFO] [stderr] Checking quick-xml v0.31.0 [INFO] [stderr] Checking md-5 v0.10.6 [INFO] [stderr] Checking itertools v0.12.1 [INFO] [stderr] Checking tokio-rustls v0.24.1 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking brotli-decompressor v2.5.1 [INFO] [stderr] Checking ordered-float v2.10.1 [INFO] [stderr] Compiling snafu-derive v0.7.5 [INFO] [stderr] Checking integer-encoding v3.0.4 [INFO] [stderr] Checking unindent v0.2.3 [INFO] [stderr] Checking thrift v0.17.0 [INFO] [stderr] Checking arrow-array v50.0.0 [INFO] [stderr] Checking hyper-rustls v0.24.2 [INFO] [stderr] Checking brotli v3.5.0 [INFO] [stderr] Checking reqwest v0.11.27 [INFO] [stderr] Compiling sqlparser_derive v0.2.2 [INFO] [stderr] Compiling seq-macro v0.3.5 [INFO] [stderr] Compiling pyo3-macros v0.20.3 [INFO] [stderr] Checking sqlparser v0.43.1 [INFO] [stderr] Compiling libdeflate-sys v1.21.0 [INFO] [stderr] Checking uuid v1.10.0 [INFO] [stderr] Checking num_cpus v1.16.0 [INFO] [stderr] Compiling rustix v0.38.37 [INFO] [stderr] Checking snafu v0.7.5 [INFO] [stderr] Checking linux-raw-sys v0.4.14 [INFO] [stderr] Checking object_store v0.9.1 [INFO] [stderr] Checking arrow-select v50.0.0 [INFO] [stderr] Checking arrow-arith v50.0.0 [INFO] [stderr] Checking arrow-cast v50.0.0 [INFO] [stderr] Checking arrow-string v50.0.0 [INFO] [stderr] Checking arrow-ord v50.0.0 [INFO] [stderr] Checking arrow-ipc v50.0.0 [INFO] [stderr] Checking arrow-csv v50.0.0 [INFO] [stderr] Checking arrow-json v50.0.0 [INFO] [stderr] Checking arrow-row v50.0.0 [INFO] [stderr] Checking zstd v0.13.2 [INFO] [stderr] Checking dashmap v5.5.3 [INFO] [stderr] Checking noodles-core v0.14.0 [INFO] [stderr] Compiling blake3 v1.5.4 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Checking libdeflater v1.21.0 [INFO] [stderr] Checking arrayvec v0.7.6 [INFO] [stderr] Checking arrayref v0.3.9 [INFO] [stderr] Checking noodles-bgzf v0.26.0 [INFO] [stderr] Checking constant_time_eq v0.3.1 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking arrow v50.0.0 [INFO] [stderr] Checking noodles-csi v0.30.0 [INFO] [stderr] Checking blake2 v0.10.6 [INFO] [stderr] Checking http-body-util v0.1.2 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Checking bytes-utils v0.1.4 [INFO] [stderr] Checking glob v0.3.1 [INFO] [stderr] Checking noodles-tabix v0.36.0 [INFO] [stderr] Checking aws-smithy-types v1.2.6 [INFO] [stderr] Checking tempfile v3.12.0 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking aws-smithy-async v1.2.1 [INFO] [stderr] Checking bstr v1.10.0 [INFO] [stderr] Checking async-compression v0.4.12 [INFO] [stderr] Checking noodles-vcf v0.49.0 [INFO] [stderr] Checking noodles-gff v0.27.0 [INFO] [stderr] Checking noodles-gtf v0.23.0 [INFO] [stderr] Checking noodles-fasta v0.33.0 [INFO] [stderr] Checking noodles-sam v0.53.0 [INFO] [stderr] Checking aws-smithy-runtime-api v1.7.2 [INFO] [stderr] Checking noodles-bed v0.12.0 [INFO] [stderr] Checking noodles-fastq v0.10.0 [INFO] [stderr] Checking parquet v50.0.0 [INFO] [stderr] Compiling phf_shared v0.10.0 [INFO] [stderr] Checking aws-smithy-json v0.60.7 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling phf_generator v0.10.0 [INFO] [stderr] Compiling string_cache_codegen v0.5.2 [INFO] [stderr] Compiling err-derive v0.3.1 [INFO] [stderr] Compiling unicode-xid v0.2.6 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Checking aws-smithy-query v0.60.7 [INFO] [stderr] Compiling synstructure v0.12.6 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking aws-smithy-http v0.60.11 [INFO] [stderr] Checking aws-credential-types v1.2.1 [INFO] [stderr] Checking precomputed-hash v0.1.1 [INFO] [stderr] Compiling gb-io v0.7.1 [INFO] [stderr] Checking new_debug_unreachable v1.0.6 [INFO] [stderr] Checking aws-smithy-runtime v1.7.1 [INFO] [stderr] Checking aws-types v1.3.3 [INFO] [stderr] Checking aws-sigv4 v1.2.4 [INFO] [stderr] Checking string_cache v0.8.7 [INFO] [stderr] Checking serde_bytes v0.11.15 [INFO] [stderr] Checking noodles-bcf v0.46.0 [INFO] [stderr] Checking circular v0.3.0 [INFO] [stderr] Checking noodles-bam v0.56.0 [INFO] [stderr] Checking nu-ansi-term v0.46.0 [INFO] [stderr] Checking sharded-slab v0.1.7 [INFO] [stderr] Checking tracing-log v0.2.0 [INFO] [stderr] Checking tracing-subscriber v0.3.18 [INFO] [stderr] Checking noodles v0.65.0 [INFO] [stderr] Checking aws-runtime v1.4.3 [INFO] [stderr] Checking aws-sdk-ssooidc v1.44.0 [INFO] [stderr] Checking aws-sdk-sts v1.43.0 [INFO] [stderr] Checking aws-sdk-sso v1.43.0 [INFO] [stderr] Checking datafusion-common v36.0.0 [INFO] [stderr] Checking aws-config v1.5.6 [INFO] [stderr] Checking datafusion-expr v36.0.0 [INFO] [stderr] Checking exon-io v0.11.1 [INFO] [stderr] Checking datafusion-execution v36.0.0 [INFO] [stderr] Checking datafusion-sql v36.0.0 [INFO] [stderr] Checking datafusion-physical-expr v36.0.0 [INFO] [stderr] Checking datafusion-functions-array v36.0.0 [INFO] [stderr] Checking datafusion-functions v36.0.0 [INFO] [stderr] Checking datafusion-physical-plan v36.0.0 [INFO] [stderr] Checking datafusion-optimizer v36.0.0 [INFO] [stderr] Checking datafusion v36.0.0 [INFO] [stderr] Checking exon-common v0.11.1 [INFO] [stderr] Checking exon-sam v0.11.1 [INFO] [stderr] Checking exon-vcf v0.11.1 [INFO] [stderr] Checking exon-genbank v0.11.1 [INFO] [stderr] Checking exon-gtf v0.11.1 [INFO] [stderr] Checking exon-bed v0.11.1 [INFO] [stderr] Checking exon-mzml v0.11.1 [INFO] [stderr] Checking exon-fasta v0.11.1 [INFO] [stderr] Checking exon-fcs v0.11.1 [INFO] [stderr] Checking exon-gff v0.11.1 [INFO] [stderr] Checking exon-fastq v0.11.1 [INFO] [stderr] Checking exon-bcf v0.11.1 [INFO] [stderr] Checking exon-bam v0.11.1 [INFO] [stderr] Checking exon v0.11.1 [INFO] [stderr] Checking exon-py v0.11.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item [INFO] [stdout] --> src/datasources/fastq.rs:36:1 [INFO] [stdout] | [INFO] [stdout] 36 | #[pymethods] [INFO] [stdout] | -^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | `PyClassImplCollector` is not local [INFO] [stdout] | `PyClassNewTextSignature` is not local [INFO] [stdout] | move the `impl` block outside of this function `trampoline` and up 4 bodies [INFO] [stdout] 37 | impl FASTQReadOptions { [INFO] [stdout] | ---------------- [INFO] [stdout] | | [INFO] [stdout] | `FASTQReadOptions` is not local [INFO] [stdout] | `FASTQReadOptions` is not local [INFO] [stdout] | [INFO] [stdout] = note: the attribute macro `pymethods` defines the non-local `impl`, and may need to be changed [INFO] [stdout] = note: the attribute macro `pymethods` may come from an old version of the `pyo3_macros` crate, try updating your dependency with `cargo update -p pyo3_macros` [INFO] [stdout] = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl` [INFO] [stdout] = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue [INFO] [stdout] = note: `#[warn(non_local_definitions)]` on by default [INFO] [stdout] = note: this warning originates in the attribute macro `pymethods` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item [INFO] [stdout] --> src/file_compression_type.rs:28:1 [INFO] [stdout] | [INFO] [stdout] 28 | #[pymethods] [INFO] [stdout] | -^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | `PyClassImplCollector` is not local [INFO] [stdout] | `PyClassNewTextSignature` is not local [INFO] [stdout] | move the `impl` block outside of this function `trampoline` and up 4 bodies [INFO] [stdout] 29 | impl FileCompressionType { [INFO] [stdout] | ------------------- [INFO] [stdout] | | [INFO] [stdout] | `FileCompressionType` is not local [INFO] [stdout] | `FileCompressionType` is not local [INFO] [stdout] | [INFO] [stdout] = note: the attribute macro `pymethods` defines the non-local `impl`, and may need to be changed [INFO] [stdout] = note: the attribute macro `pymethods` may come from an old version of the `pyo3_macros` crate, try updating your dependency with `cargo update -p pyo3_macros` [INFO] [stdout] = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl` [INFO] [stdout] = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue [INFO] [stdout] = note: this warning originates in the attribute macro `pymethods` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item [INFO] [stdout] --> src/session_context.rs:52:1 [INFO] [stdout] | [INFO] [stdout] 52 | #[pymethods] [INFO] [stdout] | -^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | `PyClassImplCollector` is not local [INFO] [stdout] | `PyClassNewTextSignature` is not local [INFO] [stdout] | move the `impl` block outside of this function `trampoline` and up 4 bodies [INFO] [stdout] 53 | impl ExonSessionContext { [INFO] [stdout] | ------------------ [INFO] [stdout] | | [INFO] [stdout] | `ExonSessionContext` is not local [INFO] [stdout] | `ExonSessionContext` is not local [INFO] [stdout] | [INFO] [stdout] = note: the attribute macro `pymethods` defines the non-local `impl`, and may need to be changed [INFO] [stdout] = note: the attribute macro `pymethods` may come from an old version of the `pyo3_macros` crate, try updating your dependency with `cargo update -p pyo3_macros` [INFO] [stdout] = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl` [INFO] [stdout] = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue [INFO] [stdout] = note: this warning originates in the attribute macro `pymethods` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item [INFO] [stdout] --> src/datasources/fastq.rs:36:1 [INFO] [stdout] | [INFO] [stdout] 36 | #[pymethods] [INFO] [stdout] | -^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | `PyClassImplCollector` is not local [INFO] [stdout] | `PyClassNewTextSignature` is not local [INFO] [stdout] | move the `impl` block outside of this function `trampoline` and up 4 bodies [INFO] [stdout] 37 | impl FASTQReadOptions { [INFO] [stdout] | ---------------- [INFO] [stdout] | | [INFO] [stdout] | `FASTQReadOptions` is not local [INFO] [stdout] | `FASTQReadOptions` is not local [INFO] [stdout] | [INFO] [stdout] = note: the attribute macro `pymethods` defines the non-local `impl`, and may need to be changed [INFO] [stdout] = note: the attribute macro `pymethods` may come from an old version of the `pyo3_macros` crate, try updating your dependency with `cargo update -p pyo3_macros` [INFO] [stdout] = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl` [INFO] [stdout] = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue [INFO] [stdout] = note: `#[warn(non_local_definitions)]` on by default [INFO] [stdout] = note: this warning originates in the attribute macro `pymethods` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item [INFO] [stdout] --> src/file_compression_type.rs:28:1 [INFO] [stdout] | [INFO] [stdout] 28 | #[pymethods] [INFO] [stdout] | -^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | `PyClassImplCollector` is not local [INFO] [stdout] | `PyClassNewTextSignature` is not local [INFO] [stdout] | move the `impl` block outside of this function `trampoline` and up 4 bodies [INFO] [stdout] 29 | impl FileCompressionType { [INFO] [stdout] | ------------------- [INFO] [stdout] | | [INFO] [stdout] | `FileCompressionType` is not local [INFO] [stdout] | `FileCompressionType` is not local [INFO] [stdout] | [INFO] [stdout] = note: the attribute macro `pymethods` defines the non-local `impl`, and may need to be changed [INFO] [stdout] = note: the attribute macro `pymethods` may come from an old version of the `pyo3_macros` crate, try updating your dependency with `cargo update -p pyo3_macros` [INFO] [stdout] = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl` [INFO] [stdout] = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue [INFO] [stdout] = note: this warning originates in the attribute macro `pymethods` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item [INFO] [stdout] --> src/session_context.rs:52:1 [INFO] [stdout] | [INFO] [stdout] 52 | #[pymethods] [INFO] [stdout] | -^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | `PyClassImplCollector` is not local [INFO] [stdout] | `PyClassNewTextSignature` is not local [INFO] [stdout] | move the `impl` block outside of this function `trampoline` and up 4 bodies [INFO] [stdout] 53 | impl ExonSessionContext { [INFO] [stdout] | ------------------ [INFO] [stdout] | | [INFO] [stdout] | `ExonSessionContext` is not local [INFO] [stdout] | `ExonSessionContext` is not local [INFO] [stdout] | [INFO] [stdout] = note: the attribute macro `pymethods` defines the non-local `impl`, and may need to be changed [INFO] [stdout] = note: the attribute macro `pymethods` may come from an old version of the `pyo3_macros` crate, try updating your dependency with `cargo update -p pyo3_macros` [INFO] [stdout] = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl` [INFO] [stdout] = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue [INFO] [stdout] = note: this warning originates in the attribute macro `pymethods` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 08s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v4.2.3 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2` [INFO] running `Command { std: "docker" "inspect" "b6461a34a3c2af3ae37352e0081988b6b3c21e35be4e12388d7aecde0c087156", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b6461a34a3c2af3ae37352e0081988b6b3c21e35be4e12388d7aecde0c087156", kill_on_drop: false }` [INFO] [stdout] b6461a34a3c2af3ae37352e0081988b6b3c21e35be4e12388d7aecde0c087156