[INFO] fetching crate exon-py 0.11.0... [INFO] checking exon-py-0.11.0 against master#ab869e094a907cc5d19b4080f22eccaf347f1f95 for pr-129604 [INFO] extracting crate exon-py 0.11.0 into /workspace/builds/worker-5-tc1/source [INFO] validating manifest of crates.io crate exon-py 0.11.0 on toolchain ab869e094a907cc5d19b4080f22eccaf347f1f95 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate exon-py 0.11.0 [INFO] finished tweaking crates.io crate exon-py 0.11.0 [INFO] tweaked toml for crates.io crate exon-py 0.11.0 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Locking 398 packages to latest compatible versions [INFO] [stderr] Adding addr2line v0.22.0 (latest: v0.24.1) [INFO] [stderr] Adding arrow v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-arith v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-array v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-buffer v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-cast v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-csv v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-data v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-ipc v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-json v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-ord v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-row v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-schema v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-select v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding arrow-string v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding base64 v0.21.7 (latest: v0.22.1) [INFO] [stderr] Adding bit-vec v0.6.3 (latest: v0.8.0) [INFO] [stderr] Adding bitflags v1.3.2 (latest: v2.6.0) [INFO] [stderr] Adding brotli v3.5.0 (latest: v6.0.0) [INFO] [stderr] Adding brotli-decompressor v2.5.1 (latest: v4.0.1) [INFO] [stderr] Adding chrono-tz v0.8.6 (latest: v0.9.0) [INFO] [stderr] Adding chrono-tz-build v0.2.1 (latest: v0.3.0) [INFO] [stderr] Adding core-foundation v0.9.4 (latest: v0.10.0) [INFO] [stderr] Adding dashmap v5.5.3 (latest: v6.0.1) [INFO] [stderr] Adding datafusion v36.0.0 (latest: v41.0.0) [INFO] [stderr] Adding datafusion-common v36.0.0 (latest: v41.0.0) [INFO] [stderr] Adding datafusion-execution v36.0.0 (latest: v41.0.0) [INFO] [stderr] Adding datafusion-expr v36.0.0 (latest: v41.0.0) [INFO] [stderr] Adding datafusion-functions v36.0.0 (latest: v41.0.0) [INFO] [stderr] Adding datafusion-functions-array v36.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-optimizer v36.0.0 (latest: v41.0.0) [INFO] [stderr] Adding datafusion-physical-expr v36.0.0 (latest: v41.0.0) [INFO] [stderr] Adding datafusion-physical-plan v36.0.0 (latest: v41.0.0) [INFO] [stderr] Adding datafusion-sql v36.0.0 (latest: v41.0.0) [INFO] [stderr] Adding exon v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-bam v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-bcf v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-bed v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-common v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-fasta v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-fastq v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-fcs v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-genbank v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-gff v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-gtf v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-io v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-mzml v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-sam v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding exon-vcf v0.11.1 (latest: v0.31.0) [INFO] [stderr] Adding fixedbitset v0.4.2 (latest: v0.5.7) [INFO] [stderr] Adding flatbuffers v23.5.26 (latest: v24.3.25) [INFO] [stderr] Adding generic-array v0.14.7 (latest: v1.1.0) [INFO] [stderr] Adding gimli v0.29.0 (latest: v0.31.0) [INFO] [stderr] Adding h2 v0.3.26 (latest: v0.4.6) [INFO] [stderr] Adding heck v0.4.1 (latest: v0.5.0) [INFO] [stderr] Adding hermit-abi v0.3.9 (latest: v0.4.0) [INFO] [stderr] Adding http v0.2.12 (latest: v1.1.0) [INFO] [stderr] Adding http-body v0.4.6 (latest: v1.0.1) [INFO] [stderr] Adding hyper v0.14.30 (latest: v1.4.1) [INFO] [stderr] Adding hyper-rustls v0.24.2 (latest: v0.27.2) [INFO] [stderr] Adding idna v0.5.0 (latest: v1.0.2) [INFO] [stderr] Adding integer-encoding v3.0.4 (latest: v4.0.2) [INFO] [stderr] Adding itertools v0.10.5 (latest: v0.13.0) [INFO] [stderr] Adding itertools v0.12.1 (latest: v0.13.0) [INFO] [stderr] Adding linux-raw-sys v0.4.14 (latest: v0.6.5) [INFO] [stderr] Adding miniz_oxide v0.7.4 (latest: v0.8.0) [INFO] [stderr] Adding nom v4.2.3 (latest: v7.1.3) [INFO] [stderr] Adding noodles v0.65.0 (latest: v0.79.0) [INFO] [stderr] Adding noodles-bam v0.56.0 (latest: v0.66.0) [INFO] [stderr] Adding noodles-bcf v0.46.0 (latest: v0.59.0) [INFO] [stderr] Adding noodles-bed v0.12.0 (latest: v0.15.0) [INFO] [stderr] Adding noodles-bgzf v0.26.0 (latest: v0.32.0) [INFO] [stderr] Adding noodles-core v0.14.0 (latest: v0.15.0) [INFO] [stderr] Adding noodles-cram v0.56.0 (latest: v0.67.0) [INFO] [stderr] Adding noodles-csi v0.30.0 (latest: v0.37.0) [INFO] [stderr] Adding noodles-fasta v0.33.0 (latest: v0.42.0) [INFO] [stderr] Adding noodles-fastq v0.10.0 (latest: v0.14.0) [INFO] [stderr] Adding noodles-gff v0.27.0 (latest: v0.35.0) [INFO] [stderr] Adding noodles-gtf v0.23.0 (latest: v0.30.0) [INFO] [stderr] Adding noodles-sam v0.53.0 (latest: v0.63.0) [INFO] [stderr] Adding noodles-tabix v0.36.0 (latest: v0.43.0) [INFO] [stderr] Adding noodles-vcf v0.49.0 (latest: v0.62.0) [INFO] [stderr] Adding nu-ansi-term v0.46.0 (latest: v0.50.1) [INFO] [stderr] Adding object_store v0.9.1 (latest: v0.11.0) [INFO] [stderr] Adding ordered-float v2.10.1 (latest: v4.2.2) [INFO] [stderr] Adding parquet v50.0.0 (latest: v52.2.0) [INFO] [stderr] Adding phf_generator v0.10.0 (latest: v0.11.2) [INFO] [stderr] Adding phf_shared v0.10.0 (latest: v0.11.2) [INFO] [stderr] Adding pyo3 v0.20.3 (latest: v0.22.2) [INFO] [stderr] Adding pyo3-build-config v0.20.3 (latest: v0.22.2) [INFO] [stderr] Adding pyo3-ffi v0.20.3 (latest: v0.22.2) [INFO] [stderr] Adding pyo3-macros v0.20.3 (latest: v0.22.2) [INFO] [stderr] Adding pyo3-macros-backend v0.20.3 (latest: v0.22.2) [INFO] [stderr] Adding quick-xml v0.31.0 (latest: v0.36.1) [INFO] [stderr] Adding reqwest v0.11.27 (latest: v0.12.7) [INFO] [stderr] Adding rustls v0.21.12 (latest: v0.23.12) [INFO] [stderr] Adding rustls-native-certs v0.6.3 (latest: v0.8.0) [INFO] [stderr] Adding rustls-pemfile v1.0.4 (latest: v2.1.3) [INFO] [stderr] Adding rustls-webpki v0.101.7 (latest: v0.102.7) [INFO] [stderr] Adding siphasher v0.3.11 (latest: v1.0.1) [INFO] [stderr] Adding snafu v0.7.5 (latest: v0.8.4) [INFO] [stderr] Adding snafu-derive v0.7.5 (latest: v0.8.4) [INFO] [stderr] Adding sqlparser v0.43.1 (latest: v0.50.0) [INFO] [stderr] Adding syn v1.0.109 (latest: v2.0.77) [INFO] [stderr] Adding sync_wrapper v0.1.2 (latest: v1.0.1) [INFO] [stderr] Adding synstructure v0.12.6 (latest: v0.13.1) [INFO] [stderr] Adding system-configuration v0.5.1 (latest: v0.6.1) [INFO] [stderr] Adding system-configuration-sys v0.5.0 (latest: v0.6.0) [INFO] [stderr] Adding tokio-rustls v0.24.1 (latest: v0.26.0) [INFO] [stderr] Adding version_check v0.1.5 (latest: v0.9.5) [INFO] [stderr] Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.2+wasi-0.2.1) [INFO] [stderr] Adding windows-core v0.52.0 (latest: v0.58.0) [INFO] [stderr] Adding windows-sys v0.48.0 (latest: v0.59.0) [INFO] [stderr] Adding windows-sys v0.52.0 (latest: v0.59.0) [INFO] [stderr] Adding windows-targets v0.48.5 (latest: v0.52.6) [INFO] [stderr] Adding windows_aarch64_gnullvm v0.48.5 (latest: v0.52.6) [INFO] [stderr] Adding windows_aarch64_msvc v0.48.5 (latest: v0.52.6) [INFO] [stderr] Adding windows_i686_gnu v0.48.5 (latest: v0.52.6) [INFO] [stderr] Adding windows_i686_msvc v0.48.5 (latest: v0.52.6) [INFO] [stderr] Adding windows_x86_64_gnu v0.48.5 (latest: v0.52.6) [INFO] [stderr] Adding windows_x86_64_gnullvm v0.48.5 (latest: v0.52.6) [INFO] [stderr] Adding windows_x86_64_msvc v0.48.5 (latest: v0.52.6) [INFO] [stderr] Adding winreg v0.50.0 (latest: v0.52.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded libdeflater v1.21.0 [INFO] [stderr] Downloaded noodles-core v0.14.0 [INFO] [stderr] Downloaded exon-bcf v0.11.1 [INFO] [stderr] Downloaded datafusion-functions v36.0.0 [INFO] [stderr] Downloaded datafusion-functions-array v36.0.0 [INFO] [stderr] Downloaded exon-vcf v0.11.1 [INFO] [stderr] Downloaded noodles-tabix v0.36.0 [INFO] [stderr] Downloaded circular v0.3.0 [INFO] [stderr] Downloaded exon-bam v0.11.1 [INFO] [stderr] Downloaded noodles-fastq v0.10.0 [INFO] [stderr] Downloaded err-derive v0.3.1 [INFO] [stderr] Downloaded noodles-fasta v0.33.0 [INFO] [stderr] Downloaded gb-io v0.7.1 [INFO] [stderr] Downloaded exon-genbank v0.11.1 [INFO] [stderr] Downloaded arrow-data v50.0.0 [INFO] [stderr] Downloaded arrow v50.0.0 [INFO] [stderr] Downloaded arrow-ipc v50.0.0 [INFO] [stderr] Downloaded datafusion-sql v36.0.0 [INFO] [stderr] Downloaded nom v4.2.3 [INFO] [stderr] Downloaded datafusion-optimizer v36.0.0 [INFO] [stderr] Downloaded arrow-array v50.0.0 [INFO] [stderr] Downloaded datafusion-expr v36.0.0 [INFO] [stderr] Downloaded libdeflate-sys v1.21.0 [INFO] [stderr] Downloaded sqlparser v0.43.1 [INFO] [stderr] Downloaded noodles-cram v0.56.0 [INFO] [stderr] Downloaded datafusion-common v36.0.0 [INFO] [stderr] Downloaded noodles-sam v0.53.0 [INFO] [stderr] Downloaded datafusion-physical-expr v36.0.0 [INFO] [stderr] Downloaded datafusion-physical-plan v36.0.0 [INFO] [stderr] Downloaded noodles-vcf v0.49.0 [INFO] [stderr] Downloaded arrow-cast v50.0.0 [INFO] [stderr] Downloaded noodles-bcf v0.46.0 [INFO] [stderr] Downloaded noodles-bam v0.56.0 [INFO] [stderr] Downloaded parquet v50.0.0 [INFO] [stderr] Downloaded datafusion v36.0.0 [INFO] [stderr] Downloaded exon v0.11.1 [INFO] [stderr] Downloaded arrow-csv v50.0.0 [INFO] [stderr] Downloaded arrow-json v50.0.0 [INFO] [stderr] Downloaded arrow-ord v50.0.0 [INFO] [stderr] Downloaded arrow-buffer v50.0.0 [INFO] [stderr] Downloaded arrow-select v50.0.0 [INFO] [stderr] Downloaded noodles-gff v0.27.0 [INFO] [stderr] Downloaded noodles-csi v0.30.0 [INFO] [stderr] Downloaded object_store v0.9.1 [INFO] [stderr] Downloaded exon-sam v0.11.1 [INFO] [stderr] Downloaded datafusion-execution v36.0.0 [INFO] [stderr] Downloaded arrow-arith v50.0.0 [INFO] [stderr] Downloaded arrow-string v50.0.0 [INFO] [stderr] Downloaded flatbuffers v23.5.26 [INFO] [stderr] Downloaded arrow-schema v50.0.0 [INFO] [stderr] Downloaded noodles-bgzf v0.26.0 [INFO] [stderr] Downloaded noodles-gtf v0.23.0 [INFO] [stderr] Downloaded exon-bed v0.11.1 [INFO] [stderr] Downloaded exon-fastq v0.11.1 [INFO] [stderr] Downloaded string_cache v0.8.7 [INFO] [stderr] Downloaded exon-gtf v0.11.1 [INFO] [stderr] Downloaded exon-mzml v0.11.1 [INFO] [stderr] Downloaded arrow-row v50.0.0 [INFO] [stderr] Downloaded noodles-bed v0.12.0 [INFO] [stderr] Downloaded string_cache_codegen v0.5.2 [INFO] [stderr] Downloaded exon-io v0.11.1 [INFO] [stderr] Downloaded exon-common v0.11.1 [INFO] [stderr] Downloaded noodles v0.65.0 [INFO] [stderr] Downloaded exon-fasta v0.11.1 [INFO] [stderr] Downloaded exon-gff v0.11.1 [INFO] [stderr] Downloaded exon-fcs v0.11.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] fffc543fe246203ec8d675c9e211c30c5598eb55976a39f65295a849121db864 [INFO] running `Command { std: "docker" "start" "-a" "fffc543fe246203ec8d675c9e211c30c5598eb55976a39f65295a849121db864", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fffc543fe246203ec8d675c9e211c30c5598eb55976a39f65295a849121db864", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fffc543fe246203ec8d675c9e211c30c5598eb55976a39f65295a849121db864", kill_on_drop: false }` [INFO] [stdout] fffc543fe246203ec8d675c9e211c30c5598eb55976a39f65295a849121db864 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4c9c66203293cc1a604a8811faa03110d36eac3108b564f518287d46b31ceee5 [INFO] running `Command { std: "docker" "start" "-a" "4c9c66203293cc1a604a8811faa03110d36eac3108b564f518287d46b31ceee5", kill_on_drop: false }` [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Compiling libc v0.2.158 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Checking parking_lot_core v0.9.10 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling phf v0.11.2 [INFO] [stderr] Checking lexical-util v0.8.5 [INFO] [stderr] Compiling target-lexicon v0.12.16 [INFO] [stderr] Checking flate2 v1.0.33 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Checking arrow-schema v50.0.0 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling flatbuffers v23.5.26 [INFO] [stderr] Checking parking_lot v0.12.3 [INFO] [stderr] Compiling zstd-safe v7.2.1 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Checking serde_urlencoded v0.7.1 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Checking tokio v1.40.0 [INFO] [stderr] Checking alloc-no-stdlib v2.0.4 [INFO] [stderr] Compiling portable-atomic v1.7.0 [INFO] [stderr] Checking futures-util v0.3.30 [INFO] [stderr] Checking lexical-write-integer v0.8.5 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Checking lexical-parse-integer v0.8.6 [INFO] [stderr] Checking serde_json v1.0.127 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Checking lexical-write-float v0.8.5 [INFO] [stderr] Compiling pyo3-build-config v0.20.3 [INFO] [stderr] Checking lexical-parse-float v0.8.5 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling cc v1.1.15 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking indexmap v2.5.0 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking chrono v0.4.38 [INFO] [stderr] Checking half v2.4.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Checking lexical-core v0.8.5 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Checking num-bigint v0.4.6 [INFO] [stderr] Checking num-iter v0.1.45 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Checking alloc-stdlib v0.2.2 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking lz4_flex v0.11.3 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking md-5 v0.10.6 [INFO] [stderr] Checking itertools v0.12.1 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking brotli-decompressor v2.5.1 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling pyo3-macros-backend v0.20.3 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking comfy-table v7.1.1 [INFO] [stderr] Checking ordered-float v2.10.1 [INFO] [stderr] Checking num v0.4.3 [INFO] [stderr] Compiling phf_generator v0.11.2 [INFO] [stderr] Checking arrow-buffer v50.0.0 [INFO] [stderr] Checking integer-encoding v3.0.4 [INFO] [stderr] Compiling phf_codegen v0.11.2 [INFO] [stderr] Compiling ring v0.17.8 [INFO] [stderr] Compiling zstd-sys v2.0.13+zstd.1.5.6 [INFO] [stderr] Checking unindent v0.2.3 [INFO] [stderr] Checking sha2 v0.10.8 [INFO] [stderr] Compiling sqlparser_derive v0.2.2 [INFO] [stderr] Compiling pyo3-ffi v0.20.3 [INFO] [stderr] Compiling regex v1.10.6 [INFO] [stderr] Compiling pyo3 v0.20.3 [INFO] [stderr] Checking brotli v3.5.0 [INFO] [stderr] Checking futures-executor v0.3.30 [INFO] [stderr] Checking thrift v0.17.0 [INFO] [stderr] Compiling seq-macro v0.3.5 [INFO] [stderr] Checking futures v0.3.30 [INFO] [stderr] Compiling libdeflate-sys v1.21.0 [INFO] [stderr] Checking arrow-data v50.0.0 [INFO] [stderr] Compiling parse-zoneinfo v0.3.1 [INFO] [stderr] Checking uuid v1.10.0 [INFO] [stderr] Checking sqlparser v0.43.1 [INFO] [stderr] Checking num_cpus v1.16.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling rustix v0.38.35 [INFO] [stderr] Compiling chrono-tz-build v0.2.1 [INFO] [stderr] Checking linux-raw-sys v0.4.14 [INFO] [stderr] Checking dashmap v5.5.3 [INFO] [stderr] Checking noodles-core v0.14.0 [INFO] [stderr] Compiling blake3 v1.5.4 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Checking constant_time_eq v0.3.1 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking blake2 v0.10.6 [INFO] [stderr] Checking crossbeam-channel v0.5.13 [INFO] [stderr] Compiling chrono-tz v0.8.6 [INFO] [stderr] Checking unicode-segmentation v1.11.0 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Checking http-body-util v0.1.2 [INFO] [stderr] Checking bytes-utils v0.1.4 [INFO] [stderr] Checking tokio-util v0.7.11 [INFO] [stderr] Checking quick-xml v0.31.0 [INFO] [stderr] Checking glob v0.3.1 [INFO] [stderr] Checking aws-smithy-types v1.2.4 [INFO] [stderr] Checking aws-smithy-async v1.2.1 [INFO] [stderr] Checking h2 v0.3.26 [INFO] [stderr] Checking bstr v1.10.0 [INFO] [stderr] Checking noodles-fastq v0.10.0 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking noodles-bed v0.12.0 [INFO] [stderr] Checking hmac v0.12.1 [INFO] [stderr] Compiling phf_shared v0.10.0 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling phf_generator v0.10.0 [INFO] [stderr] Checking aws-smithy-runtime-api v1.7.2 [INFO] [stderr] Checking aws-smithy-json v0.60.7 [INFO] [stderr] Compiling string_cache_codegen v0.5.2 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling err-derive v0.3.1 [INFO] [stderr] Compiling synstructure v0.12.6 [INFO] [stderr] Checking aws-smithy-query v0.60.7 [INFO] [stderr] Compiling pyo3-macros v0.20.3 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking precomputed-hash v0.1.1 [INFO] [stderr] Compiling gb-io v0.7.1 [INFO] [stderr] Checking new_debug_unreachable v1.0.6 [INFO] [stderr] Checking tempfile v3.12.0 [INFO] [stderr] Checking string_cache v0.8.7 [INFO] [stderr] Checking serde_bytes v0.11.15 [INFO] [stderr] Checking circular v0.3.0 [INFO] [stderr] Checking tracing-subscriber v0.3.18 [INFO] [stderr] Checking aws-smithy-http v0.60.10 [INFO] [stderr] Checking aws-credential-types v1.2.1 [INFO] [stderr] Compiling snafu-derive v0.7.5 [INFO] [stderr] Compiling rustls v0.21.12 [INFO] [stderr] Checking aws-types v1.3.3 [INFO] [stderr] Checking libdeflater v1.21.0 [INFO] [stderr] Checking aws-sigv4 v1.2.3 [INFO] [stderr] Checking noodles-bgzf v0.26.0 [INFO] [stderr] Checking noodles-csi v0.30.0 [INFO] [stderr] Checking noodles-fasta v0.33.0 [INFO] [stderr] Checking sct v0.7.1 [INFO] [stderr] Checking rustls-webpki v0.101.7 [INFO] [stderr] Checking hyper v0.14.30 [INFO] [stderr] Checking noodles-tabix v0.36.0 [INFO] [stderr] Checking noodles-sam v0.53.0 [INFO] [stderr] Checking noodles-gff v0.27.0 [INFO] [stderr] Checking noodles-gtf v0.23.0 [INFO] [stderr] Checking snafu v0.7.5 [INFO] [stderr] Checking noodles-vcf v0.49.0 [INFO] [stderr] Checking zstd v0.13.2 [INFO] [stderr] Checking noodles-bam v0.56.0 [INFO] [stderr] Checking async-compression v0.4.12 [INFO] [stderr] Checking arrow-array v50.0.0 [INFO] [stderr] Checking tokio-rustls v0.24.1 [INFO] [stderr] Checking noodles-bcf v0.46.0 [INFO] [stderr] Checking hyper-rustls v0.24.2 [INFO] [stderr] Checking arrow-select v50.0.0 [INFO] [stderr] Checking arrow-row v50.0.0 [INFO] [stderr] Checking arrow-arith v50.0.0 [INFO] [stderr] Checking noodles v0.65.0 [INFO] [stderr] Checking reqwest v0.11.27 [INFO] [stderr] Checking aws-smithy-runtime v1.7.1 [INFO] [stderr] Checking arrow-cast v50.0.0 [INFO] [stderr] Checking arrow-ord v50.0.0 [INFO] [stderr] Checking arrow-string v50.0.0 [INFO] [stderr] Checking arrow-ipc v50.0.0 [INFO] [stderr] Checking arrow-json v50.0.0 [INFO] [stderr] Checking arrow-csv v50.0.0 [INFO] [stderr] Checking object_store v0.9.1 [INFO] [stderr] Checking aws-runtime v1.4.2 [INFO] [stderr] Checking arrow v50.0.0 [INFO] [stderr] Checking aws-sdk-sso v1.40.0 [INFO] [stderr] Checking aws-sdk-ssooidc v1.41.0 [INFO] [stderr] Checking aws-sdk-sts v1.40.0 [INFO] [stderr] Checking aws-config v1.5.5 [INFO] [stderr] Checking parquet v50.0.0 [INFO] [stderr] Checking exon-io v0.11.1 [INFO] [stderr] Checking datafusion-common v36.0.0 [INFO] [stderr] Checking datafusion-expr v36.0.0 [INFO] [stderr] Checking datafusion-execution v36.0.0 [INFO] [stderr] Checking datafusion-sql v36.0.0 [INFO] [stderr] Checking datafusion-physical-expr v36.0.0 [INFO] [stderr] Checking datafusion-functions-array v36.0.0 [INFO] [stderr] Checking datafusion-functions v36.0.0 [INFO] [stderr] Checking datafusion-physical-plan v36.0.0 [INFO] [stderr] Checking datafusion-optimizer v36.0.0 [INFO] [stderr] Checking datafusion v36.0.0 [INFO] [stderr] Checking exon-common v0.11.1 [INFO] [stderr] Checking exon-sam v0.11.1 [INFO] [stderr] Checking exon-vcf v0.11.1 [INFO] [stderr] Checking exon-fastq v0.11.1 [INFO] [stderr] Checking exon-genbank v0.11.1 [INFO] [stderr] Checking exon-bed v0.11.1 [INFO] [stderr] Checking exon-fasta v0.11.1 [INFO] [stderr] Checking exon-fcs v0.11.1 [INFO] [stderr] Checking exon-mzml v0.11.1 [INFO] [stderr] Checking exon-gff v0.11.1 [INFO] [stderr] Checking exon-gtf v0.11.1 [INFO] [stderr] Checking exon-bcf v0.11.1 [INFO] [stderr] Checking exon-bam v0.11.1 [INFO] [stderr] Checking exon v0.11.1 [INFO] [stderr] Checking exon-py v0.11.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 30s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v4.2.3 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3` [INFO] running `Command { std: "docker" "inspect" "4c9c66203293cc1a604a8811faa03110d36eac3108b564f518287d46b31ceee5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4c9c66203293cc1a604a8811faa03110d36eac3108b564f518287d46b31ceee5", kill_on_drop: false }` [INFO] [stdout] 4c9c66203293cc1a604a8811faa03110d36eac3108b564f518287d46b31ceee5