[INFO] fetching crate biodiff 1.2.1...
[INFO] checking biodiff-1.2.1 against master#ab869e094a907cc5d19b4080f22eccaf347f1f95 for pr-129604
[INFO] extracting crate biodiff 1.2.1 into /workspace/builds/worker-7-tc1/source
[INFO] validating manifest of crates.io crate biodiff 1.2.1 on toolchain ab869e094a907cc5d19b4080f22eccaf347f1f95
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate biodiff 1.2.1
[INFO] finished tweaking crates.io crate biodiff 1.2.1
[INFO] tweaked toml for crates.io crate biodiff 1.2.1 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] crate crates.io crate biodiff 1.2.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded trycmd v0.15.1
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[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded biodiff-wfa2-sys v2.3.5
[INFO] [stderr]   Downloaded cursive_core v0.3.7
[INFO] [stderr]   Downloaded serde_json v1.0.115
[INFO] [stderr]   Downloaded bio v1.6.0
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[INFO] [stderr]   Downloaded cursive v0.20.0
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[INFO] [stderr]   Downloaded winapi-util v0.1.6
[INFO] [stderr]   Downloaded rawpointer v0.2.1
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded num-iter v0.1.44
[INFO] [stderr]   Downloaded num v0.4.1
[INFO] [stderr]   Downloaded num_threads v0.1.7
[INFO] [stderr]   Downloaded cursive_buffered_backend v0.6.1
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[INFO] [stderr]   Downloaded dunce v1.0.4
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[INFO] [stderr]   Downloaded humantime-serde v1.1.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 691a5a86be760a70cda3a86cd9f26f64cfc0f2c494c14f8e988da681cd6fbe9b
[INFO] running `Command { std: "docker" "start" "-a" "691a5a86be760a70cda3a86cd9f26f64cfc0f2c494c14f8e988da681cd6fbe9b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "691a5a86be760a70cda3a86cd9f26f64cfc0f2c494c14f8e988da681cd6fbe9b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "691a5a86be760a70cda3a86cd9f26f64cfc0f2c494c14f8e988da681cd6fbe9b", kill_on_drop: false }`
[INFO] [stdout] 691a5a86be760a70cda3a86cd9f26f64cfc0f2c494c14f8e988da681cd6fbe9b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 72e5ec07e199e482cfce861ba781f8abc9fa6b03ee74a27dace267c56c9b312d
[INFO] running `Command { std: "docker" "start" "-a" "72e5ec07e199e482cfce861ba781f8abc9fa6b03ee74a27dace267c56c9b312d", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.79
[INFO] [stderr]    Compiling autocfg v1.2.0
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling serde v1.0.197
[INFO] [stderr]     Checking memchr v2.7.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]    Compiling ident_case v1.0.1
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]     Checking utf8parse v0.2.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.17
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking colorchoice v1.0.0
[INFO] [stderr]     Checking log v0.4.21
[INFO] [stderr]     Checking bytemuck v1.15.0
[INFO] [stderr]     Checking anstyle-query v1.0.2
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[INFO] [stderr]     Checking anstyle v1.0.6
[INFO] [stderr]     Checking anstyle-parse v0.2.3
[INFO] [stderr]     Checking regex-syntax v0.8.3
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]    Compiling rustversion v1.0.15
[INFO] [stderr]    Compiling signal-hook v0.3.17
[INFO] [stderr]    Compiling parking_lot_core v0.9.9
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking anstream v0.6.13
[INFO] [stderr]     Checking hashbrown v0.14.3
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling cc v1.0.92
[INFO] [stderr]     Checking num_threads v0.1.7
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling lock_api v0.4.11
[INFO] [stderr]     Checking stable_deref_trait v1.2.0
[INFO] [stderr]     Checking either v1.10.0
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling thiserror v1.0.58
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]     Checking zerocopy v0.7.32
[INFO] [stderr]     Checking once_cell v1.19.0
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[INFO] [stderr]     Checking getrandom v0.2.14
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[INFO] [stderr]     Checking mio v0.8.11
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]     Checking owning_ref v0.4.1
[INFO] [stderr]    Compiling syn v2.0.58
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking crossbeam-channel v0.5.12
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling rustfft v6.2.0
[INFO] [stderr]     Checking indexmap v2.2.6
[INFO] [stderr]     Checking ryu v1.0.17
[INFO] [stderr]     Checking xi-unicode v0.3.0
[INFO] [stderr]     Checking strength_reduce v0.2.4
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]     Checking unicode-segmentation v1.11.0
[INFO] [stderr]    Compiling rustix v0.38.32
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]     Checking unicode-width v0.1.11
[INFO] [stderr]     Checking signal-hook-mio v0.2.3
[INFO] [stderr]     Checking parking_lot v0.12.1
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling biodiff-wfa2-sys v2.3.5
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking linux-raw-sys v0.4.13
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.5
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking clap_lex v0.7.0
[INFO] [stderr]     Checking bitflags v2.5.0
[INFO] [stderr]    Compiling serde_json v1.0.115
[INFO] [stderr]     Checking option-ext v0.2.0
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking crossbeam-deque v0.8.5
[INFO] [stderr]     Checking num-iter v0.1.44
[INFO] [stderr]     Checking primal-check v0.3.3
[INFO] [stderr]     Checking transpose v0.2.3
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking clap_builder v4.5.2
[INFO] [stderr]     Checking dirs-sys v0.4.1
[INFO] [stderr]     Checking crossterm v0.25.0
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking itertools v0.11.0
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[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking bytecount v0.6.7
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking num v0.4.1
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[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking fastrand v2.0.2
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[INFO] [stderr]     Checking os_pipe v1.1.5
[INFO] [stderr]     Checking wait-timeout v0.2.0
[INFO] [stderr]     Checking content_inspector v0.2.4
[INFO] [stderr]     Checking snapbox-macros v0.3.8
[INFO] [stderr]     Checking normalize-line-endings v0.3.0
[INFO] [stderr]     Checking winnow v0.6.6
[INFO] [stderr]     Checking dunce v1.0.4
[INFO] [stderr]     Checking similar v2.5.0
[INFO] [stderr]     Checking glob v0.3.1
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]     Checking shlex v1.3.0
[INFO] [stderr]    Compiling darling_core v0.20.8
[INFO] [stderr]     Checking tempfile v3.10.1
[INFO] [stderr]     Checking regex v1.10.4
[INFO] [stderr]     Checking snapbox v0.5.9
[INFO] [stderr]     Checking hexagex v0.2.3
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling serde_derive v1.0.197
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.58
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling clap_derive v4.5.4
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]    Compiling darling_macro v0.20.8
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]    Compiling darling v0.20.8
[INFO] [stderr]    Compiling enumset_derive v0.8.1
[INFO] [stderr]     Checking clap v4.5.4
[INFO] [stderr]     Checking enumset v1.1.3
[INFO] [stderr]     Checking cursive_core v0.3.7
[INFO] [stderr]     Checking realfft v3.3.0
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking cursive_buffered_backend v0.6.1
[INFO] [stderr]     Checking cursive v0.20.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking toml_datetime v0.6.5
[INFO] [stderr]     Checking serde_spanned v0.6.5
[INFO] [stderr]     Checking humantime-serde v1.1.1
[INFO] [stderr]     Checking toml_edit v0.22.12
[INFO] [stderr]     Checking trycmd v0.15.1
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking biodiff v1.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 51.14s
[INFO] running `Command { std: "docker" "inspect" "72e5ec07e199e482cfce861ba781f8abc9fa6b03ee74a27dace267c56c9b312d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "72e5ec07e199e482cfce861ba781f8abc9fa6b03ee74a27dace267c56c9b312d", kill_on_drop: false }`
[INFO] [stdout] 72e5ec07e199e482cfce861ba781f8abc9fa6b03ee74a27dace267c56c9b312d