[INFO] cloning repository https://github.com/brainstorm/htsget-indexer [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/brainstorm/htsget-indexer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fhtsget-indexer", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fhtsget-indexer'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 182650b6518cdeefad31ab1ca4aa5cb1666e0ab2 [INFO] checking brainstorm/htsget-indexer/182650b6518cdeefad31ab1ca4aa5cb1666e0ab2 against master#ab869e094a907cc5d19b4080f22eccaf347f1f95 for pr-129604 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fhtsget-indexer" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/brainstorm/htsget-indexer on toolchain ab869e094a907cc5d19b4080f22eccaf347f1f95 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/brainstorm/htsget-indexer [INFO] finished tweaking git repo https://github.com/brainstorm/htsget-indexer [INFO] tweaked toml for git repo https://github.com/brainstorm/htsget-indexer written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 107 packages to latest compatible versions [INFO] [stderr] Adding addr2line v0.22.0 (latest: v0.24.1) [INFO] [stderr] Adding bindgen v0.51.1 (latest: v0.70.1) [INFO] [stderr] Adding bitflags v1.3.2 (latest: v2.6.0) [INFO] [stderr] Adding cexpr v0.3.6 (latest: v0.6.0) [INFO] [stderr] Adding cfg-if v0.1.10 (latest: v1.0.0) [INFO] [stderr] Adding clang-sys v0.28.1 (latest: v1.8.1) [INFO] [stderr] Adding clap v2.34.0 (latest: v4.5.16) [INFO] [stderr] Adding derive-new v0.6.0 (latest: v0.7.0) [INFO] [stderr] Adding env_logger v0.6.2 (latest: v0.11.5) [INFO] [stderr] Adding gimli v0.29.0 (latest: v0.31.0) [INFO] [stderr] Adding hermit-abi v0.1.19 (latest: v0.4.0) [INFO] [stderr] Adding humantime v1.3.0 (latest: v2.1.0) [INFO] [stderr] Adding idna v0.5.0 (latest: v1.0.2) [INFO] [stderr] Adding itertools v0.8.2 (latest: v0.13.0) [INFO] [stderr] Adding libloading v0.5.2 (latest: v0.8.5) [INFO] [stderr] Adding miniz_oxide v0.7.4 (latest: v0.8.0) [INFO] [stderr] Adding nom v4.2.3 (latest: v7.1.3) [INFO] [stderr] Adding peeking_take_while v0.1.2 (latest: v1.0.0) [INFO] [stderr] Adding proc-macro2 v0.4.30 (latest: v1.0.86) [INFO] [stderr] Adding quick-error v1.2.3 (latest: v2.0.1) [INFO] [stderr] Adding quote v0.6.13 (latest: v1.0.37) [INFO] [stderr] Adding rust-htslib v0.26.1 (latest: v0.47.0) [INFO] [stderr] Adding rustc-hash v1.1.0 (latest: v2.0.0) [INFO] [stderr] Adding rustc_version v0.1.7 (latest: v0.4.1) [INFO] [stderr] Adding semver v0.1.20 (latest: v1.0.23) [INFO] [stderr] Adding shlex v0.1.1 (latest: v1.3.0) [INFO] [stderr] Adding snafu v0.5.0 (latest: v0.8.4) [INFO] [stderr] Adding snafu v0.6.10 (latest: v0.8.4) [INFO] [stderr] Adding snafu-derive v0.5.0 (latest: v0.8.4) [INFO] [stderr] Adding snafu-derive v0.6.10 (latest: v0.8.4) [INFO] [stderr] Adding strsim v0.8.0 (latest: v0.11.1) [INFO] [stderr] Adding syn v0.15.44 (latest: v2.0.77) [INFO] [stderr] Adding syn v1.0.109 (latest: v2.0.77) [INFO] [stderr] Adding textwrap v0.11.0 (latest: v0.16.1) [INFO] [stderr] Adding unicode-xid v0.1.0 (latest: v0.2.5) [INFO] [stderr] Adding version_check v0.1.5 (latest: v0.9.5) [INFO] [stderr] Adding which v3.1.1 (latest: v6.0.3) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded rust-htslib v0.26.1 [INFO] [stderr] Downloaded snafu v0.5.0 [INFO] [stderr] Downloaded snafu-derive v0.5.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f61c5606544007aed04cc4137f84188710f0a701cc7539587c790e57b12902b6 [INFO] running `Command { std: "docker" "start" "-a" "f61c5606544007aed04cc4137f84188710f0a701cc7539587c790e57b12902b6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f61c5606544007aed04cc4137f84188710f0a701cc7539587c790e57b12902b6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f61c5606544007aed04cc4137f84188710f0a701cc7539587c790e57b12902b6", kill_on_drop: false }` [INFO] [stdout] f61c5606544007aed04cc4137f84188710f0a701cc7539587c790e57b12902b6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cd4a06245f0a72cd6cfab428554f7a6da75535dfb27e35361103fdd87fba2f43 [INFO] running `Command { std: "docker" "start" "-a" "cd4a06245f0a72cd6cfab428554f7a6da75535dfb27e35361103fdd87fba2f43", kill_on_drop: false }` [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling libc v0.2.158 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling unicode-width v0.1.13 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling cc v1.1.15 [INFO] [stderr] Compiling syn v2.0.77 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling clang-sys v0.28.1 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Checking gimli v0.29.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Checking miniz_oxide v0.7.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking object v0.36.4 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling cexpr v0.3.6 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking rustc-demangle v0.1.24 [INFO] [stderr] Compiling serde v1.0.209 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Compiling serde_json v1.0.127 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling backtrace v0.3.73 [INFO] [stderr] Compiling libz-sys v1.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Checking addr2line v0.22.0 [INFO] [stderr] Compiling thiserror-impl v1.0.63 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling serde_derive v1.0.209 [INFO] [stderr] Checking thiserror v1.0.63 [INFO] [stderr] Checking regex v1.10.6 [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Checking snafu v0.5.0 [INFO] [stderr] Checking snafu v0.6.10 [INFO] [stderr] Compiling rust-htslib v0.26.1 [INFO] [stderr] Checking htsget-indexer v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 27.20s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: cexpr v0.3.6, nom v4.2.3 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "cd4a06245f0a72cd6cfab428554f7a6da75535dfb27e35361103fdd87fba2f43", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cd4a06245f0a72cd6cfab428554f7a6da75535dfb27e35361103fdd87fba2f43", kill_on_drop: false }` [INFO] [stdout] cd4a06245f0a72cd6cfab428554f7a6da75535dfb27e35361103fdd87fba2f43