[INFO] cloning repository https://github.com/TyberiusPrime/snpdiffrs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TyberiusPrime/snpdiffrs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fsnpdiffrs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fsnpdiffrs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c1960fd64fbb0824326f892fc54635e315fb8e0c
[INFO] checking TyberiusPrime/snpdiffrs/c1960fd64fbb0824326f892fc54635e315fb8e0c against master#ab869e094a907cc5d19b4080f22eccaf347f1f95 for pr-129604
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fsnpdiffrs" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/TyberiusPrime/snpdiffrs on toolchain ab869e094a907cc5d19b4080f22eccaf347f1f95
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-7-tc1/source/.cargo/config
[INFO] started tweaking git repo https://github.com/TyberiusPrime/snpdiffrs
[INFO] finished tweaking git repo https://github.com/TyberiusPrime/snpdiffrs
[INFO] tweaked toml for git repo https://github.com/TyberiusPrime/snpdiffrs written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/TyberiusPrime/snpdiffrs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/rust-bio/rust-htslib/`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htslib.git`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded zstd v0.5.4+zstd.1.4.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded zstd-safe v2.0.6+zstd.1.4.7
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.5.8
[INFO] [stderr]   Downloaded progressing v3.0.2
[INFO] [stderr]   Downloaded noisy_float v0.1.12
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded ndarray-stats v0.3.0
[INFO] [stderr]   Downloaded lzzzz v0.8.0
[INFO] [stderr]   Downloaded ndarray v0.15.1
[INFO] [stderr]   Downloaded lzma-sys v0.1.16
[INFO] [stderr]   Downloaded libz-sys v1.1.1
[INFO] [stderr]   Downloaded zstd-sys v1.4.18+zstd.1.4.7
[INFO] [stderr]   Downloaded curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]   Downloaded openssl-src v111.10.2+1.1.1g
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 1e1464bfc6ccaf6afad289e492f25df608c0aea69af2d6b1105b264e9256c095
[INFO] running `Command { std: "docker" "start" "-a" "1e1464bfc6ccaf6afad289e492f25df608c0aea69af2d6b1105b264e9256c095", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1e1464bfc6ccaf6afad289e492f25df608c0aea69af2d6b1105b264e9256c095", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1e1464bfc6ccaf6afad289e492f25df608c0aea69af2d6b1105b264e9256c095", kill_on_drop: false }`
[INFO] [stdout] 1e1464bfc6ccaf6afad289e492f25df608c0aea69af2d6b1105b264e9256c095
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+ab869e094a907cc5d19b4080f22eccaf347f1f95" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c789c9d5efcd72b32445a048431fed321a0a69d1125575a1a58c15cbb5894257
[INFO] running `Command { std: "docker" "start" "-a" "c789c9d5efcd72b32445a048431fed321a0a69d1125575a1a58c15cbb5894257", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.77
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling proc-macro2 v1.0.19
[INFO] [stderr]    Compiling syn v1.0.39
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling serde_derive v1.0.115
[INFO] [stderr]    Compiling memoffset v0.5.5
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling either v1.6.0
[INFO] [stderr]    Compiling serde v1.0.115
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling typenum v1.13.0
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling generic-array v0.14.4
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking crossbeam-channel v0.4.4
[INFO] [stderr]    Compiling hashbrown v0.8.2
[INFO] [stderr]    Compiling cc v1.0.67
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling slog v2.5.2
[INFO] [stderr]    Compiling rayon-core v1.8.1
[INFO] [stderr]     Checking tinyvec v0.3.4
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]     Checking unicode-normalization v0.1.13
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking aho-corasick v0.7.13
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking dirs-sys v0.3.5
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking crossbeam-deque v0.7.3
[INFO] [stderr]    Compiling indexmap v1.5.2
[INFO] [stderr]    Compiling openssl-src v111.10.2+1.1.1g
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]     Checking regex-syntax v0.6.18
[INFO] [stderr]    Compiling zstd-safe v2.0.6+zstd.1.4.7
[INFO] [stderr]     Checking ppv-lite86 v0.2.9
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking dirs v2.0.2
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling libz-sys v1.1.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling zstd-sys v1.4.18+zstd.1.4.7
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling hts-sys v1.10.3 (https://github.com/rust-bio/rust-htslib/#fa07d5ec)
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]    Compiling lzzzz v0.8.0
[INFO] [stderr]     Checking time v0.1.44
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]    Compiling rayon v1.4.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling nix v0.18.0
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]     Checking chrono v0.4.15
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking thiserror v1.0.20
[INFO] [stderr]     Checking term v0.6.1
[INFO] [stderr]     Checking block-buffer v0.9.0
[INFO] [stderr]     Checking digest v0.9.0
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking matrixmultiply v0.3.0
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]     Checking noisy_float v0.1.12
[INFO] [stderr]     Checking approx v0.4.0
[INFO] [stderr]     Checking crossbeam-queue v0.2.3
[INFO] [stderr]     Checking cpuid-bool v0.1.2
[INFO] [stderr]     Checking take_mut v0.2.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking sha2 v0.9.3
[INFO] [stderr]     Checking slog-async v2.5.0
[INFO] [stderr]     Checking crossbeam v0.7.3
[INFO] [stderr]     Checking slog-term v2.6.0
[INFO] [stderr]     Checking progressing v3.0.2
[INFO] [stderr]     Checking threadpool v1.8.1
[INFO] [stderr]     Checking ndarray-stats v0.3.0
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking rle_vec v0.4.1
[INFO] [stderr]     Checking safe-transmute v0.11.1
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking ndarray v0.15.1
[INFO] [stderr]     Checking bincode v1.3.2
[INFO] [stderr]     Checking toml v0.5.6
[INFO] [stderr]     Checking zstd v0.5.4+zstd.1.4.7
[INFO] [stderr]     Checking rust-htslib v0.32.1-alpha.0 (https://github.com/rust-bio/rust-htslib/#fa07d5ec)
[INFO] [stderr]     Checking snpdiffrs v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 06s
[INFO] running `Command { std: "docker" "inspect" "c789c9d5efcd72b32445a048431fed321a0a69d1125575a1a58c15cbb5894257", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c789c9d5efcd72b32445a048431fed321a0a69d1125575a1a58c15cbb5894257", kill_on_drop: false }`
[INFO] [stdout] c789c9d5efcd72b32445a048431fed321a0a69d1125575a1a58c15cbb5894257