[INFO] cloning repository https://github.com/David-OConnor/plasmid_check [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/David-OConnor/plasmid_check" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDavid-OConnor%2Fplasmid_check", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDavid-OConnor%2Fplasmid_check'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ec76406307ec5f9691482095fea4adf504569501 [INFO] checking David-OConnor/plasmid_check/ec76406307ec5f9691482095fea4adf504569501 against try#24cd45d7714ba43afd4b8e62fb677b069b21c4a5 for pr-129543 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDavid-OConnor%2Fplasmid_check" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/David-OConnor/plasmid_check on toolchain 24cd45d7714ba43afd4b8e62fb677b069b21c4a5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+24cd45d7714ba43afd4b8e62fb677b069b21c4a5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/David-OConnor/plasmid_check [INFO] finished tweaking git repo https://github.com/David-OConnor/plasmid_check [INFO] tweaked toml for git repo https://github.com/David-OConnor/plasmid_check written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/David-OConnor/plasmid_check already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+24cd45d7714ba43afd4b8e62fb677b069b21c4a5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+24cd45d7714ba43afd4b8e62fb677b069b21c4a5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3c4293e79f469054b2728d3be6fa2eb02eddad50d27e53ff713b4d9e5bd55f75 [INFO] running `Command { std: "docker" "start" "-a" "3c4293e79f469054b2728d3be6fa2eb02eddad50d27e53ff713b4d9e5bd55f75", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3c4293e79f469054b2728d3be6fa2eb02eddad50d27e53ff713b4d9e5bd55f75", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3c4293e79f469054b2728d3be6fa2eb02eddad50d27e53ff713b4d9e5bd55f75", kill_on_drop: false }` [INFO] [stdout] 3c4293e79f469054b2728d3be6fa2eb02eddad50d27e53ff713b4d9e5bd55f75 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+24cd45d7714ba43afd4b8e62fb677b069b21c4a5" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f0dd0de70ec4fb4387cdd9ca9270b288d5534e06300081b5acf2069a8deb22e1 [INFO] running `Command { std: "docker" "start" "-a" "f0dd0de70ec4fb4387cdd9ca9270b288d5534e06300081b5acf2069a8deb22e1", kill_on_drop: false }` [INFO] [stderr] Compiling serde v1.0.207 [INFO] [stderr] Checking smallvec v1.13.2 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Compiling cc v1.1.8 [INFO] [stderr] Compiling syn v2.0.70 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking libloading v0.8.4 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Compiling indexmap v2.2.6 [INFO] [stderr] Checking linux-raw-sys v0.4.14 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking dlib v0.5.2 [INFO] [stderr] Compiling wayland-sys v0.31.3 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling quick-xml v0.34.0 [INFO] [stderr] Checking concurrent-queue v2.5.0 [INFO] [stderr] Compiling wayland-client v0.31.4 [INFO] [stderr] Checking futures-util v0.3.30 [INFO] [stderr] Compiling wayland-backend v0.3.5 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling wayland-scanner v0.31.3 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking event-listener v5.3.1 [INFO] [stderr] Checking ttf-parser v0.24.0 [INFO] [stderr] Checking event-listener v2.5.3 [INFO] [stderr] Compiling io-lifetimes v1.0.11 [INFO] [stderr] Checking event-listener-strategy v0.5.2 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling toml_datetime v0.6.6 [INFO] [stderr] Compiling serde_spanned v0.6.7 [INFO] [stderr] Checking futures-lite v2.3.0 [INFO] [stderr] Compiling toml_edit v0.19.15 [INFO] [stderr] Compiling polling v2.8.0 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling memoffset v0.7.1 [INFO] [stderr] Checking owned_ttf_parser v0.24.0 [INFO] [stderr] Checking fastrand v1.9.0 [INFO] [stderr] Checking waker-fn v1.2.0 [INFO] [stderr] Checking ab_glyph_rasterizer v0.1.8 [INFO] [stderr] Compiling rustix v0.37.27 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling khronos_api v3.1.0 [INFO] [stderr] Checking ab_glyph v0.2.28 [INFO] [stderr] Checking futures-lite v1.13.0 [INFO] [stderr] Compiling zvariant_utils v1.0.1 [INFO] [stderr] Checking async-channel v2.3.1 [INFO] [stderr] Checking parking_lot_core v0.9.10 [INFO] [stderr] Checking async-lock v2.8.0 [INFO] [stderr] Checking piper v0.2.3 [INFO] [stderr] Compiling async-fs v1.6.0 [INFO] [stderr] Compiling async-io v1.13.0 [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Checking linux-raw-sys v0.3.8 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Checking blocking v1.6.1 [INFO] [stderr] Compiling proc-macro-crate v1.3.1 [INFO] [stderr] Checking parking_lot v0.12.3 [INFO] [stderr] Compiling serde_derive v1.0.207 [INFO] [stderr] Compiling tracing-attributes v0.1.27 [INFO] [stderr] Compiling bytemuck_derive v1.7.0 [INFO] [stderr] Compiling thiserror-impl v1.0.61 [INFO] [stderr] Compiling enumflags2_derive v0.7.10 [INFO] [stderr] Checking wayland-protocols v0.31.2 [INFO] [stderr] Checking bytemuck v1.16.1 [INFO] [stderr] Checking tracing v0.1.40 [INFO] [stderr] Compiling zvariant_derive v3.15.2 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Checking polling v3.7.2 [INFO] [stderr] Checking thiserror v1.0.61 [INFO] [stderr] Compiling enumn v0.1.13 [INFO] [stderr] Checking calloop v0.12.4 [INFO] [stderr] Checking socket2 v0.4.10 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling xml-rs v0.8.20 [INFO] [stderr] Checking xcursor v0.3.5 [INFO] [stderr] Compiling smithay-client-toolkit v0.18.1 [INFO] [stderr] Checking xkeysym v0.2.1 [INFO] [stderr] Checking cursor-icon v1.1.0 [INFO] [stderr] Checking sha1 v0.10.6 [INFO] [stderr] Checking wayland-csd-frame v0.3.0 [INFO] [stderr] Checking wayland-cursor v0.31.4 [INFO] [stderr] Compiling openssl-sys v0.9.103 [INFO] [stderr] Compiling gl_generator v0.14.0 [INFO] [stderr] Checking calloop-wayland-source v0.2.0 [INFO] [stderr] Checking nix v0.26.4 [INFO] [stderr] Compiling derivative v2.2.0 [INFO] [stderr] Compiling async-recursion v1.1.1 [INFO] [stderr] Compiling async-trait v0.1.81 [INFO] [stderr] Compiling serde_repr v0.1.19 [INFO] [stderr] Checking async-executor v1.12.0 [INFO] [stderr] Checking async-broadcast v0.5.1 [INFO] [stderr] Checking memmap2 v0.9.4 [INFO] [stderr] Checking xdg-home v1.2.0 [INFO] [stderr] Checking socket2 v0.5.7 [INFO] [stderr] Checking ordered-stream v0.2.0 [INFO] [stderr] Compiling regex v1.10.5 [INFO] [stderr] Checking mio v1.0.2 [INFO] [stderr] Checking x11rb-protocol v0.13.1 [INFO] [stderr] Checking as-raw-xcb-connection v1.0.1 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Checking tokio v1.39.3 [INFO] [stderr] Checking arrayref v0.3.7 [INFO] [stderr] Checking strict-num v0.1.1 [INFO] [stderr] Checking wayland-protocols-wlr v0.2.0 [INFO] [stderr] Checking tiny-skia-path v0.11.4 [INFO] [stderr] Checking x11-dl v2.21.0 [INFO] [stderr] Compiling unicase v2.7.0 [INFO] [stderr] Checking nohash-hasher v0.2.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.17 [INFO] [stderr] Compiling zbus_macros v3.15.2 [INFO] [stderr] Checking arrayvec v0.7.4 [INFO] [stderr] Checking tiny-skia v0.11.4 [INFO] [stderr] Checking enumflags2 v0.7.10 [INFO] [stderr] Checking zvariant v3.15.2 [INFO] [stderr] Checking accesskit v0.12.3 [INFO] [stderr] Checking emath v0.28.1 [INFO] [stderr] Compiling winit v0.29.15 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling openssl v0.10.66 [INFO] [stderr] Checking zbus_names v2.6.1 [INFO] [stderr] Checking raw-window-handle v0.5.2 [INFO] [stderr] Checking ecolor v0.28.1 [INFO] [stderr] Compiling siphasher v0.3.11 [INFO] [stderr] Checking epaint v0.28.1 [INFO] [stderr] Compiling phf_shared v0.10.0 [INFO] [stderr] Checking sctk-adwaita v0.8.3 [INFO] [stderr] Checking http-body v1.0.1 [INFO] [stderr] Checking wayland-protocols-plasma v0.2.0 [INFO] [stderr] Compiling glutin_egl_sys v0.6.0 [INFO] [stderr] Checking tokio-util v0.7.11 [INFO] [stderr] Compiling glutin_glx_sys v0.5.0 [INFO] [stderr] Checking zbus v3.15.2 [INFO] [stderr] Checking xkbcommon-dl v0.4.2 [INFO] [stderr] Checking safe_arch v0.7.2 [INFO] [stderr] Compiling pin-project-internal v1.1.5 [INFO] [stderr] Compiling openssl-macros v0.1.1 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking smol_str v0.2.2 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking try-lock v0.2.5 [INFO] [stderr] Checking raw-window-handle v0.6.2 [INFO] [stderr] Compiling native-tls v0.2.12 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking want v0.3.1 [INFO] [stderr] Checking wide v0.7.26 [INFO] [stderr] Checking egui v0.28.1 [INFO] [stderr] Checking h2 v0.4.6 [INFO] [stderr] Checking pin-project v1.1.5 [INFO] [stderr] Compiling phf_generator v0.10.0 [INFO] [stderr] Checking accesskit_consumer v0.16.1 [INFO] [stderr] Compiling glutin v0.31.3 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking futures-channel v0.3.30 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Checking tower-layer v0.3.3 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Checking tower-service v0.3.3 [INFO] [stderr] Checking async-once-cell v0.5.3 [INFO] [stderr] Checking tower v0.4.13 [INFO] [stderr] Checking simba v0.8.1 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking flate2 v1.0.30 [INFO] [stderr] Compiling mime_guess2 v2.0.5 [INFO] [stderr] Checking hyper v1.4.1 [INFO] [stderr] Compiling string_cache_codegen v0.5.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking atspi-common v0.3.0 [INFO] [stderr] Checking smithay-clipboard v0.7.1 [INFO] [stderr] Compiling err-derive v0.3.1 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling toml v0.7.8 [INFO] [stderr] Compiling glutin-winit v0.4.2 [INFO] [stderr] Compiling toml_edit v0.21.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling unicode-xid v0.2.4 [INFO] [stderr] Compiling serde_json v1.0.127 [INFO] [stderr] Checking home v0.5.9 [INFO] [stderr] Checking webbrowser v1.0.1 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Compiling winresource v0.1.17 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Checking dirs-sys v0.4.1 [INFO] [stderr] Compiling synstructure v0.12.6 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking x11rb v0.13.1 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking png v0.17.13 [INFO] [stderr] Compiling proc-macro-crate v3.1.0 [INFO] [stderr] Checking hyper-util v0.1.7 [INFO] [stderr] Checking nalgebra v0.32.6 [INFO] [stderr] Checking tokio-native-tls v0.3.1 [INFO] [stderr] Compiling gb-io v0.7.1 [INFO] [stderr] Checking http-body-util v0.1.2 [INFO] [stderr] Checking atspi-proxies v0.3.0 [INFO] [stderr] Checking arboard v3.4.0 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking web-time v0.2.4 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Compiling virtue v0.0.13 [INFO] [stderr] Checking rustls-pki-types v1.8.0 [INFO] [stderr] Checking glow v0.13.1 [INFO] [stderr] Checking precomputed-hash v0.1.1 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Compiling litrs v0.4.1 [INFO] [stderr] Checking string_cache v0.8.7 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking rustls-pemfile v2.1.3 [INFO] [stderr] Compiling bincode_derive v2.0.0-rc.3 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Compiling document-features v0.2.8 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Compiling num_enum_derive v0.7.3 [INFO] [stderr] Checking hyper-tls v0.6.0 [INFO] [stderr] Checking x11-clipboard v0.9.2 [INFO] [stderr] Checking egui_glow v0.28.1 [INFO] [stderr] Checking image v0.25.1 [INFO] [stderr] Checking directories v5.0.1 [INFO] [stderr] Compiling plascad v0.7.1 (/opt/rustwide/workdir) [INFO] [stderr] Checking atspi-connection v0.3.0 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking serde_urlencoded v0.7.1 [INFO] [stderr] Checking atspi v0.19.0 [INFO] [stderr] Checking accesskit_unix v0.6.2 [INFO] [stderr] Checking serde_bytes v0.11.15 [INFO] [stderr] Checking multimap v0.10.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking ordered-float v4.2.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking sync_wrapper v1.0.1 [INFO] [stderr] Checking sysinfo v0.30.13 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking circular v0.3.0 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking chrono v0.4.38 [INFO] [stderr] Checking reqwest v0.12.7 [INFO] [stderr] Checking egui-file-dialog v0.6.0 [INFO] [stderr] Checking num_enum v0.7.3 [INFO] [stderr] Checking copypasta v0.10.1 [INFO] [stderr] Checking egui_extras v0.28.1 [INFO] [stderr] Checking bincode v2.0.0-rc.3 [INFO] [stderr] Checking quick-xml v0.36.1 [INFO] [stderr] Checking accesskit_winit v0.16.1 [INFO] [stderr] Checking egui-winit v0.28.1 [INFO] [stderr] Checking eframe v0.28.1 [INFO] [stderr] Checking statrs v0.17.1 [INFO] [stderr] Checking bio v2.0.1 [INFO] [stdout] warning: unused imports: `MediaPrepInput` and `MediaPrep` [INFO] [stdout] --> src/main.rs:42:16 [INFO] [stdout] | [INFO] [stdout] 42 | portions::{MediaPrep, MediaPrepInput, PortionsState}, [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `char::MAX` [INFO] [stdout] --> src/external_websites.rs:6:11 [INFO] [stdout] | [INFO] [stdout] 6 | use std::{char::MAX, time::Duration}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Value` [INFO] [stdout] --> src/external_websites.rs:11:24 [INFO] [stdout] | [INFO] [stdout] 11 | use serde_json::{self, Value}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `NaiveDate` [INFO] [stdout] --> src/file_io/genbank.rs:13:24 [INFO] [stdout] | [INFO] [stdout] 13 | use chrono::{Datelike, NaiveDate}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `chrono::NaiveDate` [INFO] [stdout] --> src/file_io/save.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | use chrono::NaiveDate; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Reference` [INFO] [stdout] --> src/file_io/save.rs:30:61 [INFO] [stdout] | [INFO] [stdout] 30 | sequence::{Feature, Metadata, Nucleotide, ReadingFrame, Reference, Seq, SeqTopology}, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `PRIMER_REV_COLOR` and `util::RangeIncl` [INFO] [stdout] --> src/gui/circle.rs:22:40 [INFO] [stdout] | [INFO] [stdout] 22 | COL_SPACING, PRIMER_FWD_COLOR, PRIMER_REV_COLOR, ROW_SPACING, SPLIT_SCREEN_MAX_HEIGHT, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 27 | util::RangeIncl, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Sense` [INFO] [stdout] --> src/gui/feature_table.rs:4:65 [INFO] [stdout] | [INFO] [stdout] 4 | Color32, ComboBox, CursorIcon, Frame, RichText, ScrollArea, Sense, Stroke, TextEdit, Ui, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `MediaPrepInput` and `MediaPrep` [INFO] [stdout] --> src/main.rs:42:16 [INFO] [stdout] | [INFO] [stdout] 42 | portions::{MediaPrep, MediaPrepInput, PortionsState}, [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PdbSearchResult` [INFO] [stdout] --> src/gui/protein.rs:13:81 [INFO] [stdout] | [INFO] [stdout] 13 | load_pdb_data, load_pdb_structure, open_pdb, open_pdb_3d_view, PdbData, PdbSearchResult, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `char::MAX` [INFO] [stdout] --> src/external_websites.rs:6:11 [INFO] [stdout] | [INFO] [stdout] 6 | use std::{char::MAX, time::Duration}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Value` [INFO] [stdout] --> src/external_websites.rs:11:24 [INFO] [stdout] | [INFO] [stdout] 11 | use serde_json::{self, Value}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `NaiveDate` [INFO] [stdout] --> src/file_io/genbank.rs:13:24 [INFO] [stdout] | [INFO] [stdout] 13 | use chrono::{Datelike, NaiveDate}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PdbSearchResult` [INFO] [stdout] --> src/protein.rs:8:34 [INFO] [stdout] | [INFO] [stdout] 8 | external_websites::{PdbData, PdbSearchResult}, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `primer::PrimerDirection` and `seq_complement` [INFO] [stdout] --> src/restriction_enzyme.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | primer::PrimerDirection, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 11 | sequence::{ [INFO] [stdout] 12 | seq_complement, Nucleotide, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `chrono::NaiveDate` [INFO] [stdout] --> src/sequence.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use chrono::NaiveDate; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `protein::WATER_WEIGHT` [INFO] [stdout] --> src/sequence.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | protein::WATER_WEIGHT, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `chrono::NaiveDate` [INFO] [stdout] --> src/file_io/save.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | use chrono::NaiveDate; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Reference` [INFO] [stdout] --> src/file_io/save.rs:30:61 [INFO] [stdout] | [INFO] [stdout] 30 | sequence::{Feature, Metadata, Nucleotide, ReadingFrame, Reference, Seq, SeqTopology}, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `PRIMER_REV_COLOR` and `util::RangeIncl` [INFO] [stdout] --> src/gui/circle.rs:22:40 [INFO] [stdout] | [INFO] [stdout] 22 | COL_SPACING, PRIMER_FWD_COLOR, PRIMER_REV_COLOR, ROW_SPACING, SPLIT_SCREEN_MAX_HEIGHT, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 27 | util::RangeIncl, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Sense` [INFO] [stdout] --> src/gui/feature_table.rs:4:65 [INFO] [stdout] | [INFO] [stdout] 4 | Color32, ComboBox, CursorIcon, Frame, RichText, ScrollArea, Sense, Stroke, TextEdit, Ui, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PdbSearchResult` [INFO] [stdout] --> src/gui/protein.rs:13:81 [INFO] [stdout] | [INFO] [stdout] 13 | load_pdb_data, load_pdb_structure, open_pdb, open_pdb_3d_view, PdbData, PdbSearchResult, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PdbSearchResult` [INFO] [stdout] --> src/protein.rs:8:34 [INFO] [stdout] | [INFO] [stdout] 8 | external_websites::{PdbData, PdbSearchResult}, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `primer::PrimerDirection` and `seq_complement` [INFO] [stdout] --> src/restriction_enzyme.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | primer::PrimerDirection, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 11 | sequence::{ [INFO] [stdout] 12 | seq_complement, Nucleotide, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `chrono::NaiveDate` [INFO] [stdout] --> src/sequence.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use chrono::NaiveDate; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `protein::WATER_WEIGHT` [INFO] [stdout] --> src/sequence.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | protein::WATER_WEIGHT, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `chrono::NaiveDate::from_ymd`: use `from_ymd_opt()` instead [INFO] [stdout] --> src/gui/metadata.rs:90:39 [INFO] [stdout] | [INFO] [stdout] 90 | let date = NaiveDate::from_ymd(date.0, date.1.into(), date.2.into()); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Datelike` [INFO] [stdout] --> src/file_io/genbank.rs:13:14 [INFO] [stdout] | [INFO] [stdout] 13 | use chrono::{Datelike, NaiveDate}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/gui/sequence.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated associated function `chrono::NaiveDate::from_ymd`: use `from_ymd_opt()` instead [INFO] [stdout] --> src/gui/metadata.rs:90:39 [INFO] [stdout] | [INFO] [stdout] 90 | let date = NaiveDate::from_ymd(date.0, date.1.into(), date.2.into()); [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq_range` [INFO] [stdout] --> src/gui/circle.rs:536:17 [INFO] [stdout] | [INFO] [stdout] 536 | let seq_range = &prim_match.range; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seq_range` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pasted_text` [INFO] [stdout] --> src/gui/input.rs:124:30 [INFO] [stdout] | [INFO] [stdout] 124 | Event::Paste(pasted_text) => {} [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_pasted_text` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/metadata.rs:156:17 [INFO] [stdout] | [INFO] [stdout] 156 | let response = ui.add( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/gui/seq_view.rs:197:21 [INFO] [stdout] | [INFO] [stdout] 197 | let mut result = pixel_to_seq_i(pos_relative, &data.row_ranges); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `note` [INFO] [stdout] --> src/gui/sequence.rs:60:9 [INFO] [stdout] | [INFO] [stdout] 60 | for note in &feature.notes { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_note` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Datelike` [INFO] [stdout] --> src/file_io/genbank.rs:13:14 [INFO] [stdout] | [INFO] [stdout] 13 | use chrono::{Datelike, NaiveDate}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/gui/sequence.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq_len` [INFO] [stdout] --> src/gui/sequence.rs:65:46 [INFO] [stdout] | [INFO] [stdout] 65 | fn primer_text(i: usize, primers: &[Primer], seq_len: usize, ui: &mut Ui) { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seq_len` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> src/gui/mod.rs:309:13 [INFO] [stdout] | [INFO] [stdout] 309 | _ => (), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> src/gui/mod.rs:309:13 [INFO] [stdout] | [INFO] [stdout] 298 | Page::Sequence => sequence::seq_page(state, ui), [INFO] [stdout] | -------------- matches some of the same values [INFO] [stdout] 299 | Page::Map => circle::circle_page(state, ui), [INFO] [stdout] | --------- matches some of the same values [INFO] [stdout] 300 | Page::Features => feature_table::features_page(state, ui), [INFO] [stdout] | -------------- matches some of the same values [INFO] [stdout] 301 | Page::Primers => primer_details(state, ui), [INFO] [stdout] | ------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 309 | _ => (), [INFO] [stdout] | ^ ...and 5 other patterns collectively make this unreachable [INFO] [stdout] = note: `#[warn(unreachable_patterns)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/primer.rs:468:25 [INFO] [stdout] | [INFO] [stdout] 468 | Self::Only5(mut v) => Some(v), [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/primer.rs:477:25 [INFO] [stdout] | [INFO] [stdout] 477 | Self::Only3(mut v) => Some(v), [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/protein.rs:141:26 [INFO] [stdout] | [INFO] [stdout] 141 | pub fn tango_aggregation(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/protein.rs:145:18 [INFO] [stdout] | [INFO] [stdout] 145 | pub fn aggrescan(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/sequence.rs:135:13 [INFO] [stdout] | [INFO] [stdout] 135 | let mut offset = self.offset(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/tags.rs:32:25 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `lib` [INFO] [stdout] --> src/tags.rs:32:45 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_lib` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/tags.rs:33:9 [INFO] [stdout] | [INFO] [stdout] 33 | let mut result = Vec::new(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `data` [INFO] [stdout] --> src/main.rs:83:24 [INFO] [stdout] | [INFO] [stdout] 83 | fn check_seq_integrity(data: &PlasmidData) {} [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_data` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `data` [INFO] [stdout] --> src/main.rs:85:25 [INFO] [stdout] | [INFO] [stdout] 85 | fn check_toxic_proteins(data: &PlasmidData) {} [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_data` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `frame` [INFO] [stdout] --> src/main.rs:94:41 [INFO] [stdout] | [INFO] [stdout] 94 | fn update(&mut self, ctx: &Context, frame: &mut eframe::Frame) { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_frame` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `PlasmidData` is never constructed [INFO] [stdout] --> src/main.rs:76:8 [INFO] [stdout] | [INFO] [stdout] 76 | struct PlasmidData { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_seq_integrity` is never used [INFO] [stdout] --> src/main.rs:83:4 [INFO] [stdout] | [INFO] [stdout] 83 | fn check_seq_integrity(data: &PlasmidData) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_toxic_proteins` is never used [INFO] [stdout] --> src/main.rs:85:4 [INFO] [stdout] | [INFO] [stdout] 85 | fn check_toxic_proteins(data: &PlasmidData) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_all` is never used [INFO] [stdout] --> src/main.rs:87:4 [INFO] [stdout] | [INFO] [stdout] 87 | fn check_all(data: &PlasmidData) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `tag_matches` is never read [INFO] [stdout] --> src/main.rs:376:5 [INFO] [stdout] | [INFO] [stdout] 373 | struct StateVolatile { [INFO] [stdout] | ------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 376 | tag_matches: Vec, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `StateVolatile` has a derived impl for the trait `Default`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `codons` is never used [INFO] [stdout] --> src/amino_acids.rs:157:12 [INFO] [stdout] | [INFO] [stdout] 39 | impl AminoAcid { [INFO] [stdout] | -------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 157 | pub fn codons(&self) -> Vec> { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `query_id`, `result_type`, and `total_count` are never read [INFO] [stdout] --> src/external_websites.rs:167:5 [INFO] [stdout] | [INFO] [stdout] 166 | struct PdbSearchResults { [INFO] [stdout] | ---------------- fields in this struct [INFO] [stdout] 167 | query_id: String, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 168 | result_type: String, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] 169 | total_count: u32, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `PdbSearchResults` has derived impls for the traits `Default` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `PRIMER_REV_COLOR` is never used [INFO] [stdout] --> src/gui/mod.rs:66:11 [INFO] [stdout] | [INFO] [stdout] 66 | pub const PRIMER_REV_COLOR: Color32 = Color32::from_rgb(0, 255, 0); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `MAX_ARC_FILL` is never used [INFO] [stdout] --> src/gui/circle.rs:74:7 [INFO] [stdout] | [INFO] [stdout] 74 | const MAX_ARC_FILL: f32 = 230.; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `val_5p` and `val_3p` are never used [INFO] [stdout] --> src/primer.rs:466:12 [INFO] [stdout] | [INFO] [stdout] 447 | impl TuneSetting { [INFO] [stdout] | ---------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 466 | pub fn val_5p(&self) -> Option { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 475 | pub fn val_3p(&self) -> Option { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `tango_aggregation` is never used [INFO] [stdout] --> src/protein.rs:141:8 [INFO] [stdout] | [INFO] [stdout] 141 | pub fn tango_aggregation(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `aggrescan` is never used [INFO] [stdout] --> src/protein.rs:145:8 [INFO] [stdout] | [INFO] [stdout] 145 | pub fn aggrescan(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `NucleotideGeneral` is never used [INFO] [stdout] --> src/restriction_enzyme.rs:20:10 [INFO] [stdout] | [INFO] [stdout] 20 | pub enum NucleotideGeneral { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `NucleotideGeneral` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `a_max` and `molar_density` are never used [INFO] [stdout] --> src/sequence.rs:80:12 [INFO] [stdout] | [INFO] [stdout] 41 | impl Nucleotide { [INFO] [stdout] | --------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 80 | pub fn a_max(&self) -> f32 { [INFO] [stdout] | ^^^^^ [INFO] [stdout] ... [INFO] [stdout] 92 | pub fn molar_density(&self) -> f32 { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `lib_index` and `seq` are never read [INFO] [stdout] --> src/tags.rs:8:9 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct TagMatch { [INFO] [stdout] | -------- fields in this struct [INFO] [stdout] 8 | pub lib_index: usize, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 11 | pub seq: RangeInclusive, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Tag` is never constructed [INFO] [stdout] --> src/tags.rs:14:12 [INFO] [stdout] | [INFO] [stdout] 14 | pub struct Tag { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/tags.rs:21:12 [INFO] [stdout] | [INFO] [stdout] 20 | impl Tag { [INFO] [stdout] | -------- associated function in this implementation [INFO] [stdout] 21 | pub fn new(name: &str) -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `find_tag_matches` is never used [INFO] [stdout] --> src/tags.rs:32:8 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `load_tag_library` is never used [INFO] [stdout] --> src/tags.rs:39:8 [INFO] [stdout] | [INFO] [stdout] 39 | pub fn load_tag_library() -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Host` is never used [INFO] [stdout] --> src/toxic_proteins.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | enum Host { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `get_toxic_seqs` is never used [INFO] [stdout] --> src/toxic_proteins.rs:11:4 [INFO] [stdout] | [INFO] [stdout] 11 | fn get_toxic_seqs() -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `FEATURE_ANNOTATION_MATCH_THRESH` is never used [INFO] [stdout] --> src/util.rs:11:7 [INFO] [stdout] | [INFO] [stdout] 11 | const FEATURE_ANNOTATION_MATCH_THRESH: f32 = 0.95; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 56 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq_range` [INFO] [stdout] --> src/gui/circle.rs:536:17 [INFO] [stdout] | [INFO] [stdout] 536 | let seq_range = &prim_match.range; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seq_range` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pasted_text` [INFO] [stdout] --> src/gui/input.rs:124:30 [INFO] [stdout] | [INFO] [stdout] 124 | Event::Paste(pasted_text) => {} [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_pasted_text` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/metadata.rs:156:17 [INFO] [stdout] | [INFO] [stdout] 156 | let response = ui.add( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/gui/seq_view.rs:197:21 [INFO] [stdout] | [INFO] [stdout] 197 | let mut result = pixel_to_seq_i(pos_relative, &data.row_ranges); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `note` [INFO] [stdout] --> src/gui/sequence.rs:60:9 [INFO] [stdout] | [INFO] [stdout] 60 | for note in &feature.notes { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_note` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq_len` [INFO] [stdout] --> src/gui/sequence.rs:65:46 [INFO] [stdout] | [INFO] [stdout] 65 | fn primer_text(i: usize, primers: &[Primer], seq_len: usize, ui: &mut Ui) { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seq_len` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> src/gui/mod.rs:309:13 [INFO] [stdout] | [INFO] [stdout] 309 | _ => (), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> src/gui/mod.rs:309:13 [INFO] [stdout] | [INFO] [stdout] 298 | Page::Sequence => sequence::seq_page(state, ui), [INFO] [stdout] | -------------- matches some of the same values [INFO] [stdout] 299 | Page::Map => circle::circle_page(state, ui), [INFO] [stdout] | --------- matches some of the same values [INFO] [stdout] 300 | Page::Features => feature_table::features_page(state, ui), [INFO] [stdout] | -------------- matches some of the same values [INFO] [stdout] 301 | Page::Primers => primer_details(state, ui), [INFO] [stdout] | ------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 309 | _ => (), [INFO] [stdout] | ^ ...and 5 other patterns collectively make this unreachable [INFO] [stdout] = note: `#[warn(unreachable_patterns)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/primer.rs:468:25 [INFO] [stdout] | [INFO] [stdout] 468 | Self::Only5(mut v) => Some(v), [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/primer.rs:477:25 [INFO] [stdout] | [INFO] [stdout] 477 | Self::Only3(mut v) => Some(v), [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/protein.rs:141:26 [INFO] [stdout] | [INFO] [stdout] 141 | pub fn tango_aggregation(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/protein.rs:145:18 [INFO] [stdout] | [INFO] [stdout] 145 | pub fn aggrescan(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/sequence.rs:135:13 [INFO] [stdout] | [INFO] [stdout] 135 | let mut offset = self.offset(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/tags.rs:32:25 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `lib` [INFO] [stdout] --> src/tags.rs:32:45 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_lib` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/tags.rs:33:9 [INFO] [stdout] | [INFO] [stdout] 33 | let mut result = Vec::new(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `data` [INFO] [stdout] --> src/main.rs:83:24 [INFO] [stdout] | [INFO] [stdout] 83 | fn check_seq_integrity(data: &PlasmidData) {} [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_data` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `data` [INFO] [stdout] --> src/main.rs:85:25 [INFO] [stdout] | [INFO] [stdout] 85 | fn check_toxic_proteins(data: &PlasmidData) {} [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_data` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `frame` [INFO] [stdout] --> src/main.rs:94:41 [INFO] [stdout] | [INFO] [stdout] 94 | fn update(&mut self, ctx: &Context, frame: &mut eframe::Frame) { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_frame` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `PlasmidData` is never constructed [INFO] [stdout] --> src/main.rs:76:8 [INFO] [stdout] | [INFO] [stdout] 76 | struct PlasmidData { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_seq_integrity` is never used [INFO] [stdout] --> src/main.rs:83:4 [INFO] [stdout] | [INFO] [stdout] 83 | fn check_seq_integrity(data: &PlasmidData) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_toxic_proteins` is never used [INFO] [stdout] --> src/main.rs:85:4 [INFO] [stdout] | [INFO] [stdout] 85 | fn check_toxic_proteins(data: &PlasmidData) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_all` is never used [INFO] [stdout] --> src/main.rs:87:4 [INFO] [stdout] | [INFO] [stdout] 87 | fn check_all(data: &PlasmidData) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `tag_matches` is never read [INFO] [stdout] --> src/main.rs:376:5 [INFO] [stdout] | [INFO] [stdout] 373 | struct StateVolatile { [INFO] [stdout] | ------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 376 | tag_matches: Vec, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `StateVolatile` has a derived impl for the trait `Default`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `codons` is never used [INFO] [stdout] --> src/amino_acids.rs:157:12 [INFO] [stdout] | [INFO] [stdout] 39 | impl AminoAcid { [INFO] [stdout] | -------------- method in this implementation [INFO] [stdout] ... [INFO] [stdout] 157 | pub fn codons(&self) -> Vec> { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `query_id`, `result_type`, and `total_count` are never read [INFO] [stdout] --> src/external_websites.rs:167:5 [INFO] [stdout] | [INFO] [stdout] 166 | struct PdbSearchResults { [INFO] [stdout] | ---------------- fields in this struct [INFO] [stdout] 167 | query_id: String, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 168 | result_type: String, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] 169 | total_count: u32, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `PdbSearchResults` has derived impls for the traits `Default` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `PRIMER_REV_COLOR` is never used [INFO] [stdout] --> src/gui/mod.rs:66:11 [INFO] [stdout] | [INFO] [stdout] 66 | pub const PRIMER_REV_COLOR: Color32 = Color32::from_rgb(0, 255, 0); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `MAX_ARC_FILL` is never used [INFO] [stdout] --> src/gui/circle.rs:74:7 [INFO] [stdout] | [INFO] [stdout] 74 | const MAX_ARC_FILL: f32 = 230.; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `val_5p` and `val_3p` are never used [INFO] [stdout] --> src/primer.rs:466:12 [INFO] [stdout] | [INFO] [stdout] 447 | impl TuneSetting { [INFO] [stdout] | ---------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 466 | pub fn val_5p(&self) -> Option { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 475 | pub fn val_3p(&self) -> Option { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `tango_aggregation` is never used [INFO] [stdout] --> src/protein.rs:141:8 [INFO] [stdout] | [INFO] [stdout] 141 | pub fn tango_aggregation(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `aggrescan` is never used [INFO] [stdout] --> src/protein.rs:145:8 [INFO] [stdout] | [INFO] [stdout] 145 | pub fn aggrescan(seq: &[AminoAcid]) {} [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `NucleotideGeneral` is never used [INFO] [stdout] --> src/restriction_enzyme.rs:20:10 [INFO] [stdout] | [INFO] [stdout] 20 | pub enum NucleotideGeneral { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `NucleotideGeneral` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `a_max` and `molar_density` are never used [INFO] [stdout] --> src/sequence.rs:80:12 [INFO] [stdout] | [INFO] [stdout] 41 | impl Nucleotide { [INFO] [stdout] | --------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 80 | pub fn a_max(&self) -> f32 { [INFO] [stdout] | ^^^^^ [INFO] [stdout] ... [INFO] [stdout] 92 | pub fn molar_density(&self) -> f32 { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `lib_index` and `seq` are never read [INFO] [stdout] --> src/tags.rs:8:9 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct TagMatch { [INFO] [stdout] | -------- fields in this struct [INFO] [stdout] 8 | pub lib_index: usize, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 11 | pub seq: RangeInclusive, [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Tag` is never constructed [INFO] [stdout] --> src/tags.rs:14:12 [INFO] [stdout] | [INFO] [stdout] 14 | pub struct Tag { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/tags.rs:21:12 [INFO] [stdout] | [INFO] [stdout] 20 | impl Tag { [INFO] [stdout] | -------- associated function in this implementation [INFO] [stdout] 21 | pub fn new(name: &str) -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `find_tag_matches` is never used [INFO] [stdout] --> src/tags.rs:32:8 [INFO] [stdout] | [INFO] [stdout] 32 | pub fn find_tag_matches(seq: &[Nucleotide], lib: &[Tag]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `load_tag_library` is never used [INFO] [stdout] --> src/tags.rs:39:8 [INFO] [stdout] | [INFO] [stdout] 39 | pub fn load_tag_library() -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Host` is never used [INFO] [stdout] --> src/toxic_proteins.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | enum Host { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `get_toxic_seqs` is never used [INFO] [stdout] --> src/toxic_proteins.rs:11:4 [INFO] [stdout] | [INFO] [stdout] 11 | fn get_toxic_seqs() -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `FEATURE_ANNOTATION_MATCH_THRESH` is never used [INFO] [stdout] --> src/util.rs:11:7 [INFO] [stdout] | [INFO] [stdout] 11 | const FEATURE_ANNOTATION_MATCH_THRESH: f32 = 0.95; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 56 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 19s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v4.2.3 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "f0dd0de70ec4fb4387cdd9ca9270b288d5534e06300081b5acf2069a8deb22e1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f0dd0de70ec4fb4387cdd9ca9270b288d5534e06300081b5acf2069a8deb22e1", kill_on_drop: false }` [INFO] [stdout] f0dd0de70ec4fb4387cdd9ca9270b288d5534e06300081b5acf2069a8deb22e1