[INFO] fetching crate optrs 0.1.0...
[INFO] checking optrs-0.1.0 against try#ccf408f4326a858c00dd845a64a86b16f360a801 for pr-129466-2
[INFO] extracting crate optrs 0.1.0 into /workspace/builds/worker-7-tc2/source
[INFO] validating manifest of crates.io crate optrs 0.1.0 on toolchain ccf408f4326a858c00dd845a64a86b16f360a801
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ccf408f4326a858c00dd845a64a86b16f360a801" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate optrs 0.1.0
[INFO] finished tweaking crates.io crate optrs 0.1.0
[INFO] tweaked toml for crates.io crate optrs 0.1.0 written to /workspace/builds/worker-7-tc2/source/Cargo.toml
[INFO] crate crates.io crate optrs 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ccf408f4326a858c00dd845a64a86b16f360a801" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+ccf408f4326a858c00dd845a64a86b16f360a801" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 81d26d2becb7256b074326186789f42ee6b852c4dc87647a481a78bfc7d28cdb
[INFO] running `Command { std: "docker" "start" "-a" "81d26d2becb7256b074326186789f42ee6b852c4dc87647a481a78bfc7d28cdb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "81d26d2becb7256b074326186789f42ee6b852c4dc87647a481a78bfc7d28cdb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "81d26d2becb7256b074326186789f42ee6b852c4dc87647a481a78bfc7d28cdb", kill_on_drop: false }`
[INFO] [stdout] 81d26d2becb7256b074326186789f42ee6b852c4dc87647a481a78bfc7d28cdb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+ccf408f4326a858c00dd845a64a86b16f360a801" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e8dd26c1461c5d83dd72c4201623e58219bfbd36a02bfb895354109c134c08e5
[INFO] running `Command { std: "docker" "start" "-a" "e8dd26c1461c5d83dd72c4201623e58219bfbd36a02bfb895354109c134c08e5", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr]    Migrating Cargo.toml from 2021 edition to 2024
[INFO] [stderr]    Compiling libc v0.2.126
[INFO] [stderr]    Compiling proc-macro2 v1.0.39
[INFO] [stderr]    Compiling target-lexicon v0.12.4
[INFO] [stderr]    Compiling unicode-ident v1.0.0
[INFO] [stderr]    Compiling syn v1.0.95
[INFO] [stderr]    Compiling once_cell v1.12.0
[INFO] [stderr]    Compiling parking_lot_core v0.9.3
[INFO] [stderr]     Checking smallvec v1.8.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]     Checking hashbrown v0.11.2
[INFO] [stderr]    Compiling lock_api v0.4.7
[INFO] [stderr]    Compiling indexmap v1.8.2
[INFO] [stderr]     Checking os_str_bytes v6.1.0
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking termcolor v1.1.3
[INFO] [stderr]    Compiling indoc v1.0.6
[INFO] [stderr]     Checking unindent v0.1.9
[INFO] [stderr]     Checking textwrap v0.15.0
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking clap_lex v0.2.0
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]    Compiling pyo3-build-config v0.16.5
[INFO] [stderr]     Checking getrandom v0.2.6
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking parking_lot v0.12.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling pyo3-ffi v0.16.5
[INFO] [stderr]    Compiling pyo3 v0.16.5
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling pyo3-macros-backend v0.16.5
[INFO] [stderr]    Compiling clap_derive v3.1.18
[INFO] [stderr]     Checking clap v3.1.18
[INFO] [stderr]    Compiling pyo3-macros v0.16.5
[INFO] [stderr]     Checking optrs v0.1.0 (/tmp/fixit)
[INFO] [stderr]    Migrating src/lib.rs from 2021 edition to 2024
[INFO] [stderr]        Fixed src/io/xyz.rs (1 fix)
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/lib.rs:49:32
[INFO] [stdout]    |
[INFO] [stdout] 49 |     fn from_xyz_file(filename: &str) -> Self {
[INFO] [stdout]    |                                ^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout]    = note: `--force-warn unsafe-op-in-unsafe-fn` implied by `--force-warn rust-2024-compatibility`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/lib.rs:55:37
[INFO] [stdout]    |
[INFO] [stdout] 55 |     fn from_atomic_symbols(symbols: Vec<&str>) -> Self{
[INFO] [stdout]    |                                     ^^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/lib.rs:63:48
[INFO] [stdout]    |
[INFO] [stdout] 63 |     fn set_bond_orders(&mut self, bond_orders: Vec<f64>){
[INFO] [stdout]    |                                                ^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]    --> src/lib.rs:113:44
[INFO] [stdout]     |
[INFO] [stdout] 113 |     pub fn write_xyz_file(&self, filename: &str){ self.molecule.write_xyz_file(filename); }
[INFO] [stdout]     |                                            ^^^^ call to unsafe function
[INFO] [stdout]     |
[INFO] [stdout]     = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]     = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]    --> src/lib.rs:116:52
[INFO] [stdout]     |
[INFO] [stdout] 116 |     pub fn set_coordinates(&mut self, coordinates: Vec<f64>){
[INFO] [stdout]     |                                                    ^^^^^^^^ call to unsafe function
[INFO] [stdout]     |
[INFO] [stdout]     = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]     = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `filename` is never read
[INFO] [stdout]   --> src/io/xyz.rs:14:9
[INFO] [stdout]    |
[INFO] [stdout] 12 | pub struct XYZFile{
[INFO] [stdout]    |            ------- field in this struct
[INFO] [stdout] 13 |
[INFO] [stdout] 14 |     pub filename:       String,
[INFO] [stdout]    |         ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 6 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0133`.
[INFO] [stdout] 
[INFO] [stderr]        Fixed src/molecule.rs (1 fix)
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/lib.rs:49:32
[INFO] [stdout]    |
[INFO] [stdout] 49 |     fn from_xyz_file(filename: &str) -> Self {
[INFO] [stdout]    |                                ^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout]    = note: `--force-warn unsafe-op-in-unsafe-fn` implied by `--force-warn rust-2024-compatibility`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]        Fixed src/utils.rs (2 fixes)
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/lib.rs:55:37
[INFO] [stdout]    |
[INFO] [stdout] 55 |     fn from_atomic_symbols(symbols: Vec<&str>) -> Self{
[INFO] [stdout]    |                                     ^^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/lib.rs:63:48
[INFO] [stdout]    |
[INFO] [stdout] 63 |     fn set_bond_orders(&mut self, bond_orders: Vec<f64>){
[INFO] [stdout]    |                                                ^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]    --> src/lib.rs:113:44
[INFO] [stdout]     |
[INFO] [stdout] 113 |     pub fn write_xyz_file(&self, filename: &str){ self.molecule.write_xyz_file(filename); }
[INFO] [stdout]     |                                            ^^^^ call to unsafe function
[INFO] [stdout]     |
[INFO] [stdout]     = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]     = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]    --> src/lib.rs:116:52
[INFO] [stdout]     |
[INFO] [stdout] 116 |     pub fn set_coordinates(&mut self, coordinates: Vec<f64>){
[INFO] [stdout]     |                                                    ^^^^^^^^ call to unsafe function
[INFO] [stdout]     |
[INFO] [stdout]     = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]     = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `main` is never used
[INFO] [stdout]   --> src/lib.rs:26:4
[INFO] [stdout]    |
[INFO] [stdout] 26 | fn main() { run(CommandLineArguments::parse()) }
[INFO] [stdout]    |    ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `energy`, `gradient`, `numerical_gradient`, and `has_dihedrals` are never used
[INFO] [stdout]    --> src/molecule.rs:84:12
[INFO] [stdout]     |
[INFO] [stdout] 28  | impl Molecule{
[INFO] [stdout]     | ------------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 84  |     pub fn energy(&self, forcefield: &mut dyn Forcefield) -> f64{
[INFO] [stdout]     |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 89  |     pub fn gradient(&mut self,
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 95  |     pub fn numerical_gradient(&mut self,
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 224 |     fn has_dihedrals(&self) -> bool{
[INFO] [stdout]     |        ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `is_metal` is never used
[INFO] [stdout]   --> src/atoms.rs:96:12
[INFO] [stdout]    |
[INFO] [stdout] 17 | impl Atom {
[INFO] [stdout]    | --------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 96 |     pub fn is_metal(&self) -> bool{
[INFO] [stdout]    |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `from_integer` and `is_main_group` are never used
[INFO] [stdout]    --> src/atoms.rs:217:12
[INFO] [stdout]     |
[INFO] [stdout] 209 | impl AtomicNumber {
[INFO] [stdout]     | ----------------- associated items in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 217 |     pub fn from_integer(value: usize) -> Result<Self, &'static str>{
[INFO] [stdout]     |            ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 327 |     pub fn is_main_group(&self) -> bool{
[INFO] [stdout]     |            ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: static `METALLIC_ELEMENTS` is never used
[INFO] [stdout]    --> src/atoms.rs:353:8
[INFO] [stdout]     |
[INFO] [stdout] 353 | static METALLIC_ELEMENTS: [&'static str; 92] = [
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `involves_idxs` and `force_constant` are never used
[INFO] [stdout]   --> src/ff/forcefield.rs:16:8
[INFO] [stdout]    |
[INFO] [stdout] 14 | pub trait EnergyFunction{
[INFO] [stdout]    |           -------------- methods in this trait
[INFO] [stdout] 15 |
[INFO] [stdout] 16 |     fn involves_idxs(&self, idxs: Vec<usize>) -> bool;
[INFO] [stdout]    |        ^^^^^^^^^^^^^
[INFO] [stdout] 17 |
[INFO] [stdout] 18 |     fn force_constant(&self) -> f64;
[INFO] [stdout]    |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `filename` is never read
[INFO] [stdout]   --> src/io/xyz.rs:14:9
[INFO] [stdout]    |
[INFO] [stdout] 12 | pub struct XYZFile{
[INFO] [stdout]    |            ------- field in this struct
[INFO] [stdout] 13 |
[INFO] [stdout] 14 |     pub filename:       String,
[INFO] [stdout]    |         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `run` is never used
[INFO] [stdout]   --> src/cli.rs:20:8
[INFO] [stdout]    |
[INFO] [stdout] 20 | pub fn run(args: CommandLineArguments) {
[INFO] [stdout]    |        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 13 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0133`.
[INFO] [stdout] 
[INFO] [stderr]    Migrating src/main.rs from 2021 edition to 2024
[INFO] [stdout] warning: multiple associated items are never used
[INFO] [stdout]    --> src/molecule.rs:52:12
[INFO] [stdout]     |
[INFO] [stdout] 28  | impl Molecule{
[INFO] [stdout]     | ------------- associated items in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 52  |     pub fn from_atomic_symbols(symbols: &[&str]) -> Self{
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 84  |     pub fn energy(&self, forcefield: &mut dyn Forcefield) -> f64{
[INFO] [stdout]     |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 89  |     pub fn gradient(&mut self,
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 95  |     pub fn numerical_gradient(&mut self,
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 224 |     fn has_dihedrals(&self) -> bool{
[INFO] [stdout]     |        ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 416 |     fn minimum_pairwise_distance(&self) -> f64{
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 435 |     pub fn randomise_coordinates(&mut self){
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 468 |     pub fn build_3d(&mut self){
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `clear` is never used
[INFO] [stdout]    --> src/molecule.rs:554:12
[INFO] [stdout]     |
[INFO] [stdout] 551 | impl Connectivity {
[INFO] [stdout]     | ----------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 554 |     pub fn clear(&mut self){
[INFO] [stdout]     |            ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `is_metal` is never used
[INFO] [stdout]   --> src/atoms.rs:96:12
[INFO] [stdout]    |
[INFO] [stdout] 17 | impl Atom {
[INFO] [stdout]    | --------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 96 |     pub fn is_metal(&self) -> bool{
[INFO] [stdout]    |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `from_integer` and `is_main_group` are never used
[INFO] [stdout]    --> src/atoms.rs:217:12
[INFO] [stdout]     |
[INFO] [stdout] 209 | impl AtomicNumber {
[INFO] [stdout]     | ----------------- associated items in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 217 |     pub fn from_integer(value: usize) -> Result<Self, &'static str>{
[INFO] [stdout]     |            ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 327 |     pub fn is_main_group(&self) -> bool{
[INFO] [stdout]     |            ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: static `METALLIC_ELEMENTS` is never used
[INFO] [stdout]    --> src/atoms.rs:353:8
[INFO] [stdout]     |
[INFO] [stdout] 353 | static METALLIC_ELEMENTS: [&'static str; 92] = [
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant `Quadruple` is never constructed
[INFO] [stdout]   --> src/connectivity/bonds.rs:99:5
[INFO] [stdout]    |
[INFO] [stdout] 94 | pub enum BondOrder{
[INFO] [stdout]    |          --------- variant in this enum
[INFO] [stdout] ...
[INFO] [stdout] 99 |     Quadruple
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `BondOrder` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated functions `iterator` and `from_value` are never used
[INFO] [stdout]    --> src/connectivity/bonds.rs:111:8
[INFO] [stdout]     |
[INFO] [stdout] 109 | impl BondOrder {
[INFO] [stdout]     | -------------- associated functions in this implementation
[INFO] [stdout] 110 |
[INFO] [stdout] 111 |     fn iterator() ->  Iter<'static, BondOrder>{
[INFO] [stdout]     |        ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 128 |     pub(crate) fn from_value(value: &f64) -> Self{
[INFO] [stdout]     |                   ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `involves_idxs` and `force_constant` are never used
[INFO] [stdout]   --> src/ff/forcefield.rs:16:8
[INFO] [stdout]    |
[INFO] [stdout] 14 | pub trait EnergyFunction{
[INFO] [stdout]    |           -------------- methods in this trait
[INFO] [stdout] 15 |
[INFO] [stdout] 16 |     fn involves_idxs(&self, idxs: Vec<usize>) -> bool;
[INFO] [stdout]    |        ^^^^^^^^^^^^^
[INFO] [stdout] 17 |
[INFO] [stdout] 18 |     fn force_constant(&self) -> f64;
[INFO] [stdout]    |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `filename` is never read
[INFO] [stdout]   --> src/io/xyz.rs:14:9
[INFO] [stdout]    |
[INFO] [stdout] 12 | pub struct XYZFile{
[INFO] [stdout]    |            ------- field in this struct
[INFO] [stdout] 13 |
[INFO] [stdout] 14 |     pub filename:       String,
[INFO] [stdout]    |         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `from_max_iterations` is never used
[INFO] [stdout]   --> src/opt/sd.rs:33:12
[INFO] [stdout]    |
[INFO] [stdout] 18 | impl SteepestDecentOptimiser {
[INFO] [stdout]    | ---------------------------- associated function in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 33 |     pub fn from_max_iterations(max_num_iterations: usize) -> Self{
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `is_very_close` is never used
[INFO] [stdout]   --> src/utils.rs:20:8
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub trait IsVeryClose{
[INFO] [stdout]    |           ----------- method in this trait
[INFO] [stdout] 20 |     fn is_very_close(&self, other: &f64) -> bool;
[INFO] [stdout]    |        ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 11 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]    --> src/molecule.rs:823:36
[INFO] [stdout]     |
[INFO] [stdout] 823 |             assert_eq!(bond.order, BondOrder::Single);
[INFO] [stdout]     |                                    ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]     |
[INFO] [stdout] 593 +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]    --> src/molecule.rs:837:40
[INFO] [stdout]     |
[INFO] [stdout] 837 |                 assert_eq!(bond.order, BondOrder::Double);
[INFO] [stdout]     |                                        ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]     |
[INFO] [stdout] 593 +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]    --> src/molecule.rs:840:40
[INFO] [stdout]     |
[INFO] [stdout] 840 |                 assert_eq!(bond.order, BondOrder::Single);
[INFO] [stdout]     |                                        ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]     |
[INFO] [stdout] 593 +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]    --> src/molecule.rs:856:69
[INFO] [stdout]     |
[INFO] [stdout] 856 |         let expected_bond = Bond{pair: AtomPair{i: 0, j: 1}, order: BondOrder::Double};
[INFO] [stdout]     |                                                                     ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]     |
[INFO] [stdout] 593 +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]    --> src/molecule.rs:868:69
[INFO] [stdout]     |
[INFO] [stdout] 868 |         let expected_bond = Bond{pair: AtomPair{i: 0, j: 1}, order: BondOrder::Double};
[INFO] [stdout]     |                                                                     ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]     |
[INFO] [stdout] 593 +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]    --> src/molecule.rs:944:40
[INFO] [stdout]     |
[INFO] [stdout] 944 |                 assert_eq!(bond.order, BondOrder::Aromatic);
[INFO] [stdout]     |                                        ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]     |
[INFO] [stdout] 593 +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]    --> src/molecule.rs:965:35
[INFO] [stdout]     |
[INFO] [stdout] 965 |         assert_eq!(cc_bond.order, BondOrder::Triple);
[INFO] [stdout]     |                                   ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]     |
[INFO] [stdout] 593 +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]    --> src/molecule.rs:985:35
[INFO] [stdout]     |
[INFO] [stdout] 985 |             assert!(bond.order == BondOrder::Double || bond.order == BondOrder::Single);
[INFO] [stdout]     |                                   ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]     |
[INFO] [stdout] 593 +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]    --> src/molecule.rs:985:70
[INFO] [stdout]     |
[INFO] [stdout] 985 |             assert!(bond.order == BondOrder::Double || bond.order == BondOrder::Single);
[INFO] [stdout]     |                                                                      ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]     |
[INFO] [stdout] 593 +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]     --> src/molecule.rs:1067:20
[INFO] [stdout]      |
[INFO] [stdout] 1067 |         assert_eq!(BondOrder::from_value(&1.0), BondOrder::Single);
[INFO] [stdout]      |                    ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]      |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]      |
[INFO] [stdout] 593  +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]     --> src/molecule.rs:1067:49
[INFO] [stdout]      |
[INFO] [stdout] 1067 |         assert_eq!(BondOrder::from_value(&1.0), BondOrder::Single);
[INFO] [stdout]      |                                                 ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]      |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]      |
[INFO] [stdout] 593  +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]     --> src/molecule.rs:1068:20
[INFO] [stdout]      |
[INFO] [stdout] 1068 |         assert_eq!(BondOrder::from_value(&4.0), BondOrder::Quadruple);
[INFO] [stdout]      |                    ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]      |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]      |
[INFO] [stdout] 593  +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]     --> src/molecule.rs:1068:49
[INFO] [stdout]      |
[INFO] [stdout] 1068 |         assert_eq!(BondOrder::from_value(&4.0), BondOrder::Quadruple);
[INFO] [stdout]      |                                                 ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]      |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]      |
[INFO] [stdout] 593  +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]     --> src/molecule.rs:1077:20
[INFO] [stdout]      |
[INFO] [stdout] 1077 |         assert_eq!(BondOrder::from_value(&-1.0), BondOrder::Single);
[INFO] [stdout]      |                    ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]      |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]      |
[INFO] [stdout] 593  +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `BondOrder`
[INFO] [stdout]     --> src/molecule.rs:1077:50
[INFO] [stdout]      |
[INFO] [stdout] 1077 |         assert_eq!(BondOrder::from_value(&-1.0), BondOrder::Single);
[INFO] [stdout]      |                                                  ^^^^^^^^^ use of undeclared type `BondOrder`
[INFO] [stdout]      |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]      |
[INFO] [stdout] 593  +     use crate::connectivity::bonds::BondOrder;
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `Molecule` in this scope
[INFO] [stdout]   --> src/utils.rs:33:57
[INFO] [stdout]    |
[INFO] [stdout] 33 | pub(crate) fn num_and_anal_gradient_are_close(mol: &mut Molecule, ff: &mut dyn Forcefield) -> bool{
[INFO] [stdout]    |                                                         ^^^^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]    |
[INFO] [stdout] 3  + use crate::molecule::Molecule;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0405]: cannot find trait `Forcefield` in this scope
[INFO] [stdout]   --> src/utils.rs:33:80
[INFO] [stdout]    |
[INFO] [stdout] 33 | pub(crate) fn num_and_anal_gradient_are_close(mol: &mut Molecule, ff: &mut dyn Forcefield) -> bool{
[INFO] [stdout]    |                                                                                ^^^^^^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this trait
[INFO] [stdout]    |
[INFO] [stdout] 3  + use crate::ff::forcefield::Forcefield;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 17 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0405, E0412, E0433.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0405`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `optrs` (bin "optrs" test) due to 18 previous errors
[INFO] [stderr] error: failed to migrate to next edition
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `cargo fix --edition --allow-no-vcs --allow-dirty --frozen --all --all-targets --message-format=json` (exit status: 101)
[INFO] running `Command { std: "docker" "inspect" "e8dd26c1461c5d83dd72c4201623e58219bfbd36a02bfb895354109c134c08e5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e8dd26c1461c5d83dd72c4201623e58219bfbd36a02bfb895354109c134c08e5", kill_on_drop: false }`
[INFO] [stdout] e8dd26c1461c5d83dd72c4201623e58219bfbd36a02bfb895354109c134c08e5