[INFO] fetching crate openmm-sys 7.4.1... [INFO] checking openmm-sys-7.4.1 against master#f609b7e0586f81fefb3523e3e17adf779ac416be for pr-129466-2 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-1-tc1/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain f609b7e0586f81fefb3523e3e17adf779ac416be [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cmake v0.1.44 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8da5c9781213d9e348057651b4050f7369c15e770747c6dac9af056a91b3d5f4 [INFO] running `Command { std: "docker" "start" "-a" "8da5c9781213d9e348057651b4050f7369c15e770747c6dac9af056a91b3d5f4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8da5c9781213d9e348057651b4050f7369c15e770747c6dac9af056a91b3d5f4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8da5c9781213d9e348057651b4050f7369c15e770747c6dac9af056a91b3d5f4", kill_on_drop: false }` [INFO] [stdout] 8da5c9781213d9e348057651b4050f7369c15e770747c6dac9af056a91b3d5f4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8d7f26e365970c4b8744f92a78c2cb738d8efad4241947a0b09553e7a1b3add4 [INFO] running `Command { std: "docker" "start" "-a" "8d7f26e365970c4b8744f92a78c2cb738d8efad4241947a0b09553e7a1b3add4", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: openmm-sys@7.4.1: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-19b915e701087451/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/openmm-sys-0fd3f735f525d066/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-0fd3f735f525d066/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python3.10 (found version "3.10.12") [INFO] [stderr] -- The C compiler identification is GNU 11.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 11.4.0 [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-0fd3f735f525d066/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:230 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:594 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.22/Modules/FindDoxygen.cmake:646 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.44/src/lib.rs:885:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5ceda2fd4e8a - ::fmt::h731c3e1b756ff019 [INFO] [stderr] 1: 0x5ceda2ff810b - core::fmt::write::h9c97613a183100ea [INFO] [stderr] 2: 0x5ceda2fd1923 - std::io::Write::write_fmt::h7288d7c7dce2722e [INFO] [stderr] 3: 0x5ceda2fd4cd2 - std::sys::backtrace::BacktraceLock::print::h2bc6f048c13121f8 [INFO] [stderr] 4: 0x5ceda2fd61b7 - std::panicking::default_hook::{{closure}}::hde92e91975a101c0 [INFO] [stderr] 5: 0x5ceda2fd5fe6 - std::panicking::default_hook::hd8d6e2273bfc5edc [INFO] [stderr] 6: 0x5ceda2fd67b7 - std::panicking::rust_panic_with_hook::hb332f821833efd3b [INFO] [stderr] 7: 0x5ceda2fd6657 - std::panicking::begin_panic_handler::{{closure}}::h00065c7fd19dfc55 [INFO] [stderr] 8: 0x5ceda2fd5369 - std::sys::backtrace::__rust_end_short_backtrace::h10e475bd14bb8cb7 [INFO] [stderr] 9: 0x5ceda2fd62e4 - rust_begin_unwind [INFO] [stderr] 10: 0x5ceda2ff6f73 - core::panicking::panic_fmt::h59e161f9c51d6f0e [INFO] [stderr] 11: 0x5ceda2f78402 - cmake::fail::h41945a85de73ef0e [INFO] [stderr] 12: 0x5ceda2f77b39 - cmake::run::hec705ac056de7ba0 [INFO] [stderr] 13: 0x5ceda2f740c7 - cmake::Config::build::ha3b252001c654463 [INFO] [stderr] 14: 0x5ceda2f6f091 - build_script_build::main::h23c62e35cb02710a [INFO] [stderr] 15: 0x5ceda2f6a473 - core::ops::function::FnOnce::call_once::h54a238dd6c75cef0 [INFO] [stderr] 16: 0x5ceda2f6a1f6 - std::sys::backtrace::__rust_begin_short_backtrace::h84f8f623983f1301 [INFO] [stderr] 17: 0x5ceda2f69eb9 - std::rt::lang_start::{{closure}}::hbd703cc6203c8c7e [INFO] [stderr] 18: 0x5ceda2fcde10 - std::rt::lang_start_internal::hf1cb939424e8449c [INFO] [stderr] 19: 0x5ceda2f69e97 - std::rt::lang_start::h23771ac2b4f2fa28 [INFO] [stderr] 20: 0x5ceda2f6f545 - main [INFO] [stderr] 21: 0x78bb0bdbdd90 - [INFO] [stderr] 22: 0x78bb0bdbde40 - __libc_start_main [INFO] [stderr] 23: 0x5ceda2f69af5 - _start [INFO] [stderr] 24: 0x0 - [INFO] running `Command { std: "docker" "inspect" "8d7f26e365970c4b8744f92a78c2cb738d8efad4241947a0b09553e7a1b3add4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8d7f26e365970c4b8744f92a78c2cb738d8efad4241947a0b09553e7a1b3add4", kill_on_drop: false }` [INFO] [stdout] 8d7f26e365970c4b8744f92a78c2cb738d8efad4241947a0b09553e7a1b3add4