[INFO] fetching crate librna-sys 0.3.0-pre.2... [INFO] checking librna-sys-0.3.0-pre.2 against master#f609b7e0586f81fefb3523e3e17adf779ac416be for pr-129466-2 [INFO] extracting crate librna-sys 0.3.0-pre.2 into /workspace/builds/worker-4-tc1/source [INFO] validating manifest of crates.io crate librna-sys 0.3.0-pre.2 on toolchain f609b7e0586f81fefb3523e3e17adf779ac416be [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate librna-sys 0.3.0-pre.2 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate librna-sys 0.3.0-pre.2 [INFO] tweaked toml for crates.io crate librna-sys 0.3.0-pre.2 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] crate crates.io crate librna-sys 0.3.0-pre.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-macros-backend v0.22.2 [INFO] [stderr] Downloaded pyo3-macros v0.22.2 [INFO] [stderr] Downloaded pyo3-ffi v0.22.2 [INFO] [stderr] Downloaded pyo3-build-config v0.22.2 [INFO] [stderr] Downloaded pyo3 v0.22.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bc43c1116ca935746ed6e50229df888de6aaad3f1bf53587c66ad5b6a5e0d9ad [INFO] running `Command { std: "docker" "start" "-a" "bc43c1116ca935746ed6e50229df888de6aaad3f1bf53587c66ad5b6a5e0d9ad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bc43c1116ca935746ed6e50229df888de6aaad3f1bf53587c66ad5b6a5e0d9ad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bc43c1116ca935746ed6e50229df888de6aaad3f1bf53587c66ad5b6a5e0d9ad", kill_on_drop: false }` [INFO] [stdout] bc43c1116ca935746ed6e50229df888de6aaad3f1bf53587c66ad5b6a5e0d9ad [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7ba452f7b1f124badac6dc9454ed03c11d0d16827e85f497816ad9d34f9a3903 [INFO] running `Command { std: "docker" "start" "-a" "7ba452f7b1f124badac6dc9454ed03c11d0d16827e85f497816ad9d34f9a3903", kill_on_drop: false }` [INFO] [stderr] Compiling target-lexicon v0.12.16 [INFO] [stderr] Compiling unicode-ident v1.0.6 [INFO] [stderr] Compiling libc v0.2.158 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Compiling libloading v0.7.3 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling shlex v1.1.0 [INFO] [stderr] Compiling clang-sys v1.3.1 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling bindgen v0.70.1 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling syn v2.0.77 [INFO] [stderr] Compiling pyo3-build-config v0.22.2 [INFO] [stderr] Compiling nom v7.1.1 [INFO] [stderr] Checking unindent v0.2.3 [INFO] [stderr] Compiling regex v1.5.5 [INFO] [stderr] Compiling indoc v2.0.5 [INFO] [stderr] Compiling pyo3-ffi v0.22.2 [INFO] [stderr] Compiling pyo3-macros-backend v0.22.2 [INFO] [stderr] Compiling pyo3 v0.22.2 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling prettyplease v0.2.22 [INFO] [stderr] Compiling pyo3-macros v0.22.2 [INFO] [stderr] Compiling librna-sys v0.3.0-pre.2 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: librna-sys@0.3.0-pre.2: environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include [INFO] [stderr] warning: librna-sys@0.3.0-pre.2: environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib [INFO] [stderr] warning: librna-sys@0.3.0-pre.2: libRNA.a not found! [INFO] [stderr] warning: librna-sys@0.3.0-pre.2: Fallback mode for locally building libRNA.a is not yet implemented. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `librna-sys v0.3.0-pre.2 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/librna-sys-4c37c275fc290a92/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=src/wrapper.h [INFO] [stderr] cargo:rerun-if-env-changed=LIBRNA_LIB_DIR [INFO] [stderr] cargo:rerun-if-env-changed=LIBRNA_INCLUDE_DIR [INFO] [stderr] cargo:warning=environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include [INFO] [stderr] cargo:warning=environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib [INFO] [stderr] cargo:warning=libRNA.a not found! [INFO] [stderr] cargo:warning=Fallback mode for locally building libRNA.a is not yet implemented. [INFO] [stderr] cargo:rustc-link-lib=static=RNA [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] cargo:rustc-link-lib=gsl [INFO] [stderr] cargo:rustc-link-lib=mpfr [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=gmp [INFO] [stderr] cargo:include=/usr/include [INFO] [stderr] cargo:include=/usr/include/ViennaRNA [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] src/wrapper.h:1:10: fatal error: 'ViennaRNA/vrna_config.h' file not found [INFO] [stderr] thread 'main' panicked at src/build.rs:95:10: [INFO] [stderr] Unable to generate bindings: ClangDiagnostic("src/wrapper.h:1:10: fatal error: 'ViennaRNA/vrna_config.h' file not found\n") [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5b5263d74e7a - std::backtrace_rs::backtrace::libunwind::trace::h97abfd8a85887826 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5 [INFO] [stderr] 1: 0x5b5263d74e7a - std::backtrace_rs::backtrace::trace_unsynchronized::h3fe33c3e2ffb6416 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5b5263d74e7a - std::sys::backtrace::_print_fmt::hdf29e1ca2ba4cbbc [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x5b5263d74e7a - ::fmt::h731c3e1b756ff019 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x5b5263d9c6ab - core::fmt::rt::Argument::fmt::hdfecaf84742c5a76 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/fmt/rt.rs:177:76 [INFO] [stderr] 5: 0x5b5263d9c6ab - core::fmt::write::h9c97613a183100ea [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/fmt/mod.rs:1186:21 [INFO] [stderr] 6: 0x5b5263d71903 - std::io::Write::write_fmt::h7288d7c7dce2722e [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/io/mod.rs:1823:15 [INFO] [stderr] 7: 0x5b5263d74cc2 - std::sys::backtrace::BacktraceLock::print::h2bc6f048c13121f8 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 8: 0x5b5263d75f87 - std::panicking::default_hook::{{closure}}::hde92e91975a101c0 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:268:22 [INFO] [stderr] 9: 0x5b5263d75db6 - std::panicking::default_hook::hd8d6e2273bfc5edc [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:295:9 [INFO] [stderr] 10: 0x5b5263d765c7 - std::panicking::rust_panic_with_hook::hb332f821833efd3b [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:801:13 [INFO] [stderr] 11: 0x5b5263d76467 - std::panicking::begin_panic_handler::{{closure}}::h00065c7fd19dfc55 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:674:13 [INFO] [stderr] 12: 0x5b5263d75359 - std::sys::backtrace::__rust_end_short_backtrace::h10e475bd14bb8cb7 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/sys/backtrace.rs:170:18 [INFO] [stderr] 13: 0x5b5263d760f4 - rust_begin_unwind [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:665:5 [INFO] [stderr] 14: 0x5b5263d9aa13 - core::panicking::panic_fmt::h59e161f9c51d6f0e [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/panicking.rs:74:14 [INFO] [stderr] 15: 0x5b5263d9ae96 - core::result::unwrap_failed::h54376d3d4b8f04d2 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/result.rs:1689:5 [INFO] [stderr] 16: 0x5b52638956c0 - core::result::Result::expect::hc2f18536a31d9057 [INFO] [stderr] 17: 0x5b526389a8e3 - build_script_build::main::ha163c68935e21639 [INFO] [stderr] 18: 0x5b5263894df3 - core::ops::function::FnOnce::call_once::h7d609dca00b66ad2 [INFO] [stderr] 19: 0x5b52638948b6 - std::sys::backtrace::__rust_begin_short_backtrace::h51bf7d139b88a894 [INFO] [stderr] 20: 0x5b5263894899 - std::rt::lang_start::{{closure}}::h17ca82cbf2a60785 [INFO] [stderr] 21: 0x5b5263d6d930 - core::ops::function::impls:: for &F>::call_once::h00708edcd5cb0bf9 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 22: 0x5b5263d6d930 - std::panicking::try::do_call::h3211acb5ef596e26 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:557:40 [INFO] [stderr] 23: 0x5b5263d6d930 - std::panicking::try::hfc77046d1a78b97f [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:520:19 [INFO] [stderr] 24: 0x5b5263d6d930 - std::panic::catch_unwind::h8cc6f9c887e41bb5 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panic.rs:348:14 [INFO] [stderr] 25: 0x5b5263d6d930 - std::rt::lang_start_internal::{{closure}}::h1ae7a528cb090b94 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/rt.rs:143:48 [INFO] [stderr] 26: 0x5b5263d6d930 - std::panicking::try::do_call::h7b341eaacca88c96 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:557:40 [INFO] [stderr] 27: 0x5b5263d6d930 - std::panicking::try::h2190145387d00b24 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:520:19 [INFO] [stderr] 28: 0x5b5263d6d930 - std::panic::catch_unwind::h39d0834a21ce2b28 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panic.rs:348:14 [INFO] [stderr] 29: 0x5b5263d6d930 - std::rt::lang_start_internal::hf1cb939424e8449c [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/rt.rs:143:20 [INFO] [stderr] 30: 0x5b5263894877 - std::rt::lang_start::hbf3efbe5c3b8858c [INFO] [stderr] 31: 0x5b526389af95 - main [INFO] [stderr] 32: 0x799415129d90 - [INFO] [stderr] 33: 0x799415129e40 - __libc_start_main [INFO] [stderr] 34: 0x5b5263894275 - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "7ba452f7b1f124badac6dc9454ed03c11d0d16827e85f497816ad9d34f9a3903", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7ba452f7b1f124badac6dc9454ed03c11d0d16827e85f497816ad9d34f9a3903", kill_on_drop: false }` [INFO] [stdout] 7ba452f7b1f124badac6dc9454ed03c11d0d16827e85f497816ad9d34f9a3903