[INFO] fetching crate hts 0.1.18... [INFO] checking hts-0.1.18 against master#f609b7e0586f81fefb3523e3e17adf779ac416be for pr-129466-2 [INFO] extracting crate hts 0.1.18 into /workspace/builds/worker-6-tc1/source [INFO] validating manifest of crates.io crate hts 0.1.18 on toolchain f609b7e0586f81fefb3523e3e17adf779ac416be [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hts 0.1.18 [INFO] finished tweaking crates.io crate hts 0.1.18 [INFO] tweaked toml for crates.io crate hts 0.1.18 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] crate crates.io crate hts 0.1.18 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded which v3.1.1 [INFO] [stderr] Downloaded shlex v0.1.1 [INFO] [stderr] Downloaded pkg-config v0.3.19 [INFO] [stderr] Downloaded memchr v2.3.4 [INFO] [stderr] Downloaded bitflags v1.2.1 [INFO] [stderr] Downloaded glob v0.3.0 [INFO] [stderr] Downloaded cexpr v0.4.0 [INFO] [stderr] Downloaded version_check v0.9.3 [INFO] [stderr] Downloaded libloading v0.7.0 [INFO] [stderr] Downloaded proc-macro2 v1.0.26 [INFO] [stderr] Downloaded clang-sys v1.2.0 [INFO] [stderr] Downloaded log v0.4.14 [INFO] [stderr] Downloaded ansi_term v0.11.0 [INFO] [stderr] Downloaded aho-corasick v0.7.15 [INFO] [stderr] Downloaded nom v5.1.2 [INFO] [stderr] Downloaded bindgen v0.55.1 [INFO] [stderr] Downloaded clap v2.33.3 [INFO] [stderr] Downloaded regex v1.4.5 [INFO] [stderr] Downloaded unicode-width v0.1.8 [INFO] [stderr] Downloaded hermit-abi v0.1.18 [INFO] [stderr] Downloaded regex-syntax v0.6.23 [INFO] [stderr] Downloaded unicode-xid v0.2.1 [INFO] [stderr] Downloaded quote v1.0.9 [INFO] [stderr] Downloaded termcolor v1.1.2 [INFO] [stderr] Downloaded libc v0.2.93 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7a0cf8d83398bb2049e8f263d9ecd83f589a56a5e9cdf9cfb74592898dff430b [INFO] running `Command { std: "docker" "start" "-a" "7a0cf8d83398bb2049e8f263d9ecd83f589a56a5e9cdf9cfb74592898dff430b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7a0cf8d83398bb2049e8f263d9ecd83f589a56a5e9cdf9cfb74592898dff430b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7a0cf8d83398bb2049e8f263d9ecd83f589a56a5e9cdf9cfb74592898dff430b", kill_on_drop: false }` [INFO] [stdout] 7a0cf8d83398bb2049e8f263d9ecd83f589a56a5e9cdf9cfb74592898dff430b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 08c773c3de7a992a4b9e4f53df093c74bb35d222e737aa90c5ee71b75d63f646 [INFO] running `Command { std: "docker" "start" "-a" "08c773c3de7a992a4b9e4f53df093c74bb35d222e737aa90c5ee71b75d63f646", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.93 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling regex-syntax v0.6.23 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.4.5 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling hts v0.1.18 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `hts v0.1.18 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hts-eee46db0511885e2/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/hts-cad12e7fc1e34b68/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/hts-cad12e7fc1e34b68/out/htslib [INFO] [stderr] + git clone --recursive -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at build.rs:33:5: [INFO] [stderr] assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success() [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56e03bb0c21a - std::backtrace_rs::backtrace::libunwind::trace::h97abfd8a85887826 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5 [INFO] [stderr] 1: 0x56e03bb0c21a - std::backtrace_rs::backtrace::trace_unsynchronized::h3fe33c3e2ffb6416 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x56e03bb0c21a - std::sys::backtrace::_print_fmt::hdf29e1ca2ba4cbbc [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x56e03bb0c21a - ::fmt::h731c3e1b756ff019 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x56e03bb340bb - core::fmt::rt::Argument::fmt::hdfecaf84742c5a76 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/fmt/rt.rs:177:76 [INFO] [stderr] 5: 0x56e03bb340bb - core::fmt::write::h9c97613a183100ea [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/fmt/mod.rs:1186:21 [INFO] [stderr] 6: 0x56e03bb08d43 - std::io::Write::write_fmt::h7288d7c7dce2722e [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/io/mod.rs:1823:15 [INFO] [stderr] 7: 0x56e03bb0c062 - std::sys::backtrace::BacktraceLock::print::h2bc6f048c13121f8 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 8: 0x56e03bb0d547 - std::panicking::default_hook::{{closure}}::hde92e91975a101c0 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:268:22 [INFO] [stderr] 9: 0x56e03bb0d376 - std::panicking::default_hook::hd8d6e2273bfc5edc [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:295:9 [INFO] [stderr] 10: 0x56e03bb0db87 - std::panicking::rust_panic_with_hook::hb332f821833efd3b [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:801:13 [INFO] [stderr] 11: 0x56e03bb0d9f3 - std::panicking::begin_panic_handler::{{closure}}::h00065c7fd19dfc55 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:667:13 [INFO] [stderr] 12: 0x56e03bb0c6f9 - std::sys::backtrace::__rust_end_short_backtrace::h10e475bd14bb8cb7 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/sys/backtrace.rs:170:18 [INFO] [stderr] 13: 0x56e03bb0d6b4 - rust_begin_unwind [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:665:5 [INFO] [stderr] 14: 0x56e03bb32423 - core::panicking::panic_fmt::h59e161f9c51d6f0e [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/panicking.rs:74:14 [INFO] [stderr] 15: 0x56e03bb324ac - core::panicking::panic::hc205c5af866c8d0d [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/panicking.rs:148:5 [INFO] [stderr] 16: 0x56e03b76c125 - build_script_build::build_own_htslib::h7d3890897bcf9386 [INFO] [stderr] 17: 0x56e03b76c5d1 - build_script_build::main::h653d4daec7d584b4 [INFO] [stderr] 18: 0x56e03b769653 - core::ops::function::FnOnce::call_once::h79caa1cfb09b5eb5 [INFO] [stderr] 19: 0x56e03b769346 - std::sys::backtrace::__rust_begin_short_backtrace::he754f8b407d773bf [INFO] [stderr] 20: 0x56e03b769329 - std::rt::lang_start::{{closure}}::hde8276f06efff18c [INFO] [stderr] 21: 0x56e03bb053f0 - core::ops::function::impls:: for &F>::call_once::h00708edcd5cb0bf9 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 22: 0x56e03bb053f0 - std::panicking::try::do_call::h3211acb5ef596e26 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:557:40 [INFO] [stderr] 23: 0x56e03bb053f0 - std::panicking::try::hfc77046d1a78b97f [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:520:19 [INFO] [stderr] 24: 0x56e03bb053f0 - std::panic::catch_unwind::h8cc6f9c887e41bb5 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panic.rs:348:14 [INFO] [stderr] 25: 0x56e03bb053f0 - std::rt::lang_start_internal::{{closure}}::h1ae7a528cb090b94 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/rt.rs:143:48 [INFO] [stderr] 26: 0x56e03bb053f0 - std::panicking::try::do_call::h7b341eaacca88c96 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:557:40 [INFO] [stderr] 27: 0x56e03bb053f0 - std::panicking::try::h2190145387d00b24 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:520:19 [INFO] [stderr] 28: 0x56e03bb053f0 - std::panic::catch_unwind::h39d0834a21ce2b28 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panic.rs:348:14 [INFO] [stderr] 29: 0x56e03bb053f0 - std::rt::lang_start_internal::hf1cb939424e8449c [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/rt.rs:143:20 [INFO] [stderr] 30: 0x56e03b769307 - std::rt::lang_start::h12592a75757da6cb [INFO] [stderr] 31: 0x56e03b76cbc5 - main [INFO] [stderr] 32: 0x74bffbbf3d90 - [INFO] [stderr] 33: 0x74bffbbf3e40 - __libc_start_main [INFO] [stderr] 34: 0x56e03b768a15 - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "08c773c3de7a992a4b9e4f53df093c74bb35d222e737aa90c5ee71b75d63f646", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "08c773c3de7a992a4b9e4f53df093c74bb35d222e737aa90c5ee71b75d63f646", kill_on_drop: false }` [INFO] [stdout] 08c773c3de7a992a4b9e4f53df093c74bb35d222e737aa90c5ee71b75d63f646