[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ae36c59429e1ac7bc38bf4a4e6f3f2942bf58526 [INFO] checking 38/pyd4/ae36c59429e1ac7bc38bf4a4e6f3f2942bf58526 against master#f609b7e0586f81fefb3523e3e17adf779ac416be for pr-129466-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain f609b7e0586f81fefb3523e3e17adf779ac416be [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/38/d4-format.git` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded crossbeam-utils v0.8.5 [INFO] [stderr] Downloaded pyo3cls v0.12.4 [INFO] [stderr] Downloaded indoc-impl v0.3.6 [INFO] [stderr] Downloaded inventory-impl v0.1.10 [INFO] [stderr] Downloaded redox_syscall v0.2.10 [INFO] [stderr] Downloaded cexpr v0.4.0 [INFO] [stderr] Downloaded shlex v0.1.1 [INFO] [stderr] Downloaded instant v0.1.10 [INFO] [stderr] Downloaded ctor v0.1.20 [INFO] [stderr] Downloaded crossbeam-epoch v0.9.5 [INFO] [stderr] Downloaded libloading v0.7.0 [INFO] [stderr] Downloaded crc32fast v1.2.1 [INFO] [stderr] Downloaded flate2 v1.0.20 [INFO] [stderr] Downloaded serde_derive v1.0.127 [INFO] [stderr] Downloaded serde v1.0.127 [INFO] [stderr] Downloaded pyo3-derive-backend v0.12.4 [INFO] [stderr] Downloaded serde_json v1.0.66 [INFO] [stderr] Downloaded crossbeam-channel v0.5.1 [INFO] [stderr] Downloaded clang-sys v1.2.0 [INFO] [stderr] Downloaded bindgen v0.55.1 [INFO] [stderr] Downloaded ghost v0.1.2 [INFO] [stderr] Downloaded syn v1.0.74 [INFO] [stderr] Downloaded pyo3 v0.12.4 [INFO] [stderr] Downloaded inventory v0.1.10 [INFO] [stderr] Downloaded paste-impl v0.1.18 [INFO] [stderr] Downloaded paste v0.1.18 [INFO] [stderr] Downloaded proc-macro2 v1.0.28 [INFO] [stderr] Downloaded which v3.1.1 [INFO] [stderr] Downloaded pkg-config v0.3.19 [INFO] [stderr] Downloaded indoc v0.3.6 [INFO] [stderr] Downloaded lock_api v0.4.4 [INFO] [stderr] Downloaded unindent v0.1.7 [INFO] [stderr] Downloaded libc v0.2.99 [INFO] [stderr] Downloaded memoffset v0.6.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9982667968dc4dcd735616a3ae767cd00066bd43f7400bfb75f95a62bf2157fd [INFO] running `Command { std: "docker" "start" "-a" "9982667968dc4dcd735616a3ae767cd00066bd43f7400bfb75f95a62bf2157fd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9982667968dc4dcd735616a3ae767cd00066bd43f7400bfb75f95a62bf2157fd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9982667968dc4dcd735616a3ae767cd00066bd43f7400bfb75f95a62bf2157fd", kill_on_drop: false }` [INFO] [stdout] 9982667968dc4dcd735616a3ae767cd00066bd43f7400bfb75f95a62bf2157fd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ceb6ea022f8a89cebbe621bb4987e73a935bd40dfbb726f832cfff4742a5b95a" "/opt/rustwide/cargo-home/bin/cargo" "+f609b7e0586f81fefb3523e3e17adf779ac416be" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 05d089ba1aeac82cc7bc2da28363dcc0c7d7223cb562184dfe1f74fb13c1a373 [INFO] running `Command { std: "docker" "start" "-a" "05d089ba1aeac82cc7bc2da28363dcc0c7d7223cb562184dfe1f74fb13c1a373", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling serde v1.0.127 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Checking instant v0.1.10 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling inventory v0.1.10 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Compiling serde_derive v1.0.127 [INFO] [stderr] Compiling serde_json v1.0.66 [INFO] [stderr] Compiling unindent v0.1.7 [INFO] [stderr] Checking crossbeam-deque v0.8.1 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Checking smallvec v1.6.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Compiling pyo3 v0.12.4 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Checking d4-framefile v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] Compiling pyo3-derive-backend v0.12.4 [INFO] [stderr] Compiling ctor v0.1.20 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Compiling pyo3cls v0.12.4 [INFO] [stderr] Compiling d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-e056a0bebe45ecda/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-679dba12c25ffcd6/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-679dba12c25ffcd6/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/git/checkouts/d4-format-79e980b083c9a312/fe86a8f/d4-hts/build.rs:34:5: [INFO] [stderr] assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success() [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x577497ed1f5a - std::backtrace_rs::backtrace::libunwind::trace::h97abfd8a85887826 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5 [INFO] [stderr] 1: 0x577497ed1f5a - std::backtrace_rs::backtrace::trace_unsynchronized::h3fe33c3e2ffb6416 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x577497ed1f5a - std::sys::backtrace::_print_fmt::hdf29e1ca2ba4cbbc [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x577497ed1f5a - ::fmt::h731c3e1b756ff019 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x577497efa48b - core::fmt::rt::Argument::fmt::hdfecaf84742c5a76 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/fmt/rt.rs:177:76 [INFO] [stderr] 5: 0x577497efa48b - core::fmt::write::h9c97613a183100ea [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/fmt/mod.rs:1186:21 [INFO] [stderr] 6: 0x577497ecea73 - std::io::Write::write_fmt::h7288d7c7dce2722e [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/io/mod.rs:1823:15 [INFO] [stderr] 7: 0x577497ed1da2 - std::sys::backtrace::BacktraceLock::print::h2bc6f048c13121f8 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 8: 0x577497ed3615 - std::panicking::default_hook::{{closure}}::hde92e91975a101c0 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:268:22 [INFO] [stderr] 9: 0x577497ed3444 - std::panicking::default_hook::hd8d6e2273bfc5edc [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:295:9 [INFO] [stderr] 10: 0x577497ed3c57 - std::panicking::rust_panic_with_hook::hb332f821833efd3b [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:801:13 [INFO] [stderr] 11: 0x577497ed3ac3 - std::panicking::begin_panic_handler::{{closure}}::h00065c7fd19dfc55 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:667:13 [INFO] [stderr] 12: 0x577497ed2439 - std::sys::backtrace::__rust_end_short_backtrace::h10e475bd14bb8cb7 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/sys/backtrace.rs:170:18 [INFO] [stderr] 13: 0x577497ed3784 - rust_begin_unwind [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:665:5 [INFO] [stderr] 14: 0x577497ef87f3 - core::panicking::panic_fmt::h59e161f9c51d6f0e [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/panicking.rs:74:14 [INFO] [stderr] 15: 0x577497ef887c - core::panicking::panic::hc205c5af866c8d0d [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/panicking.rs:148:5 [INFO] [stderr] 16: 0x577497b1b225 - build_script_build::build_own_htslib::h9068a6971af4ebd7 [INFO] [stderr] 17: 0x577497b1b6d1 - build_script_build::main::h283e3e3fb4e6a9e4 [INFO] [stderr] 18: 0x577497b18713 - core::ops::function::FnOnce::call_once::h030354555e6ea63d [INFO] [stderr] 19: 0x577497b18436 - std::sys::backtrace::__rust_begin_short_backtrace::h9eb4c7608fcc9e65 [INFO] [stderr] 20: 0x577497b18419 - std::rt::lang_start::{{closure}}::h97fc70c23fd41ebf [INFO] [stderr] 21: 0x577497ecb120 - core::ops::function::impls:: for &F>::call_once::h00708edcd5cb0bf9 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 22: 0x577497ecb120 - std::panicking::try::do_call::h3211acb5ef596e26 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:557:40 [INFO] [stderr] 23: 0x577497ecb120 - std::panicking::try::hfc77046d1a78b97f [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:520:19 [INFO] [stderr] 24: 0x577497ecb120 - std::panic::catch_unwind::h8cc6f9c887e41bb5 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panic.rs:348:14 [INFO] [stderr] 25: 0x577497ecb120 - std::rt::lang_start_internal::{{closure}}::h1ae7a528cb090b94 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/rt.rs:143:48 [INFO] [stderr] 26: 0x577497ecb120 - std::panicking::try::do_call::h7b341eaacca88c96 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:557:40 [INFO] [stderr] 27: 0x577497ecb120 - std::panicking::try::h2190145387d00b24 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panicking.rs:520:19 [INFO] [stderr] 28: 0x577497ecb120 - std::panic::catch_unwind::h39d0834a21ce2b28 [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/panic.rs:348:14 [INFO] [stderr] 29: 0x577497ecb120 - std::rt::lang_start_internal::hf1cb939424e8449c [INFO] [stderr] at /rustc/f609b7e0586f81fefb3523e3e17adf779ac416be/library/std/src/rt.rs:143:20 [INFO] [stderr] 30: 0x577497b183f7 - std::rt::lang_start::hff472e9176c927bc [INFO] [stderr] 31: 0x577497b1bce5 - main [INFO] [stderr] 32: 0x7978a70efd90 - [INFO] [stderr] 33: 0x7978a70efe40 - __libc_start_main [INFO] [stderr] 34: 0x577497b17b05 - _start [INFO] [stderr] 35: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "05d089ba1aeac82cc7bc2da28363dcc0c7d7223cb562184dfe1f74fb13c1a373", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "05d089ba1aeac82cc7bc2da28363dcc0c7d7223cb562184dfe1f74fb13c1a373", kill_on_drop: false }` [INFO] [stdout] 05d089ba1aeac82cc7bc2da28363dcc0c7d7223cb562184dfe1f74fb13c1a373