[INFO] cloning repository https://github.com/10XGenomics/vartrix [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/vartrix" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 3dd49885e9c2cdce72b1c0e58e125a5285a184bc [INFO] checking 10XGenomics/vartrix/3dd49885e9c2cdce72b1c0e58e125a5285a184bc against master#0f6e1ae67854c3c44726e8376144c16b465fe7c6 for pr-129392 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/10XGenomics/vartrix on toolchain 0f6e1ae67854c3c44726e8376144c16b465fe7c6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0f6e1ae67854c3c44726e8376144c16b465fe7c6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/10XGenomics/vartrix [INFO] finished tweaking git repo https://github.com/10XGenomics/vartrix [INFO] tweaked toml for git repo https://github.com/10XGenomics/vartrix written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/10XGenomics/vartrix already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0f6e1ae67854c3c44726e8376144c16b465fe7c6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded strum v0.16.0 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded fs-utils v1.1.1 [INFO] [stderr] Downloaded bytecount v0.6.0 [INFO] [stderr] Downloaded human-panic v1.1.5 [INFO] [stderr] Downloaded multimap v0.6.0 [INFO] [stderr] Downloaded bv v0.11.0 [INFO] [stderr] Downloaded miniz_oxide v0.3.2 [INFO] [stderr] Downloaded flate2 v1.0.11 [INFO] [stderr] Downloaded strum_macros v0.16.0 [INFO] [stderr] Downloaded statrs v0.11.0 [INFO] [stderr] Downloaded rust-htslib v0.36.0 [INFO] [stderr] Downloaded bio-types v0.10.0 [INFO] [stderr] Downloaded bio v0.30.0 [INFO] [stderr] Downloaded simplelog v0.5.3 [INFO] [stderr] Downloaded bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Downloaded hts-sys v1.11.1-fix1 [INFO] [stderr] Downloaded curl-sys v0.4.36+curl-7.71.1 [INFO] [stderr] Downloaded openssl-src v111.25.0+1.1.1t [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+0f6e1ae67854c3c44726e8376144c16b465fe7c6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 590f0a74aa2e48deab373cdd6a3957eae083fef34412d7bf17d0cb2337c3e242 [INFO] running `Command { std: "docker" "start" "-a" "590f0a74aa2e48deab373cdd6a3957eae083fef34412d7bf17d0cb2337c3e242", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "590f0a74aa2e48deab373cdd6a3957eae083fef34412d7bf17d0cb2337c3e242", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "590f0a74aa2e48deab373cdd6a3957eae083fef34412d7bf17d0cb2337c3e242", kill_on_drop: false }` [INFO] [stdout] 590f0a74aa2e48deab373cdd6a3957eae083fef34412d7bf17d0cb2337c3e242 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+0f6e1ae67854c3c44726e8376144c16b465fe7c6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2ae36e09a16c1abadfca4fe12a6476a7e9fe0167108fbb819b95001cd268b509 [INFO] running `Command { std: "docker" "start" "-a" "2ae36e09a16c1abadfca4fe12a6476a7e9fe0167108fbb819b95001cd268b509", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.147 [INFO] [stderr] Compiling autocfg v0.1.6 [INFO] [stderr] Compiling pkg-config v0.3.16 [INFO] [stderr] Compiling libm v0.2.7 [INFO] [stderr] Compiling syn v1.0.11 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling crossbeam-utils v0.8.16 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling memoffset v0.9.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking cfg-if v0.1.9 [INFO] [stderr] Compiling syn v2.0.25 [INFO] [stderr] Compiling unicode-segmentation v1.3.0 [INFO] [stderr] Checking gimli v0.27.3 [INFO] [stderr] Checking miniz_oxide v0.7.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.15 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling rustix v0.38.3 [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Checking rustc-demangle v0.1.16 [INFO] [stderr] Compiling io-lifetimes v1.0.11 [INFO] [stderr] Checking thread_local v0.3.6 [INFO] [stderr] Checking object v0.31.1 [INFO] [stderr] Checking aho-corasick v0.7.6 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Checking smallvec v0.6.14 [INFO] [stderr] Checking hashbrown v0.14.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking regex-syntax v0.6.12 [INFO] [stderr] Compiling ryu v1.0.0 [INFO] [stderr] Checking bitflags v2.3.3 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling doc-comment v0.3.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling rustix v0.37.13 [INFO] [stderr] Checking equivalent v1.0.1 [INFO] [stderr] Checking linux-raw-sys v0.4.3 [INFO] [stderr] Checking matches v0.1.8 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking indexmap v2.0.0 [INFO] [stderr] Checking unicode-bidi v0.3.4 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Compiling bv v0.11.0 [INFO] [stderr] Checking unicode-normalization v0.1.8 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Checking itertools v0.8.0 [INFO] [stderr] Compiling cc v1.0.79 [INFO] [stderr] Compiling rayon-core v1.11.0 [INFO] [stderr] Checking linux-raw-sys v0.3.8 [INFO] [stderr] Checking winnow v0.4.9 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Checking crossbeam-deque v0.8.3 [INFO] [stderr] Checking addr2line v0.20.0 [INFO] [stderr] Checking anstyle-parse v0.2.1 [INFO] [stderr] Compiling openssl-src v111.25.0+1.1.1t [INFO] [stderr] Checking num_cpus v1.10.1 [INFO] [stderr] Checking time v0.1.42 [INFO] [stderr] Checking getrandom v0.2.10 [INFO] [stderr] Checking dirs v1.0.5 [INFO] [stderr] Checking is-terminal v0.4.9 [INFO] [stderr] Compiling synstructure v0.12.6 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Checking crossbeam-channel v0.5.8 [INFO] [stderr] Checking regex v1.3.1 [INFO] [stderr] Compiling tempfile v3.6.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking bit-vec v0.5.1 [INFO] [stderr] Compiling serde_derive v1.0.171 [INFO] [stderr] Checking ordermap v0.3.5 [INFO] [stderr] Checking anstyle v1.0.1 [INFO] [stderr] Checking fixedbitset v0.1.9 [INFO] [stderr] Checking unicode-width v0.1.6 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling openssl-sys v0.9.60 [INFO] [stderr] Compiling backtrace v0.3.68 [INFO] [stderr] Compiling curl-sys v0.4.36+curl-7.71.1 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling hts-sys v1.11.1-fix1 [INFO] [stderr] Compiling bio v0.30.0 [INFO] [stderr] Checking anstyle-query v1.0.0 [INFO] [stderr] Checking petgraph v0.4.13 [INFO] [stderr] Checking url v2.1.1 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling thiserror-impl v1.0.20 [INFO] [stderr] Checking anstream v0.3.2 [INFO] [stderr] Compiling strum_macros v0.16.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking bit-set v0.5.1 [INFO] [stderr] Checking miniz_oxide v0.3.2 [INFO] [stderr] Checking statrs v0.11.0 [INFO] [stderr] Checking chrono v0.4.9 [INFO] [stderr] Checking term v0.5.2 [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Checking uuid v1.4.0 [INFO] [stderr] Checking crc32fast v1.2.0 [INFO] [stderr] Checking alga v0.9.3 [INFO] [stderr] Checking atty v0.2.13 [INFO] [stderr] Checking num-traits v0.1.43 [INFO] [stderr] Checking thiserror v1.0.20 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking bio-types v0.10.0 [INFO] [stderr] Checking bytecount v0.6.0 [INFO] [stderr] Checking fastrand v1.9.0 [INFO] [stderr] Checking strum v0.16.0 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking fnv v1.0.6 [INFO] [stderr] Checking simplelog v0.5.3 [INFO] [stderr] Checking terminal_size v0.2.6 [INFO] [stderr] Checking flate2 v1.0.11 [INFO] [stderr] Checking rayon v1.7.0 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Checking sprs v0.7.1 [INFO] [stderr] Checking snafu v0.5.0 [INFO] [stderr] Checking serde v1.0.171 [INFO] [stderr] Checking toml_datetime v0.6.3 [INFO] [stderr] Checking serde_spanned v0.6.3 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking toml_edit v0.19.12 [INFO] [stderr] Checking csv v1.2.2 [INFO] [stderr] Checking multimap v0.6.0 [INFO] [stderr] Checking os_info v3.7.0 [INFO] [stderr] Checking clap v2.33.0 [INFO] [stderr] Checking toml v0.7.6 [INFO] [stderr] Checking human-panic v1.1.5 [INFO] [stderr] Checking rust-htslib v0.36.0 [INFO] [stderr] Checking vartrix v1.1.22 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead [INFO] [stdout] --> src/main.rs:139:5 [INFO] [stdout] | [INFO] [stdout] 139 | setup_panic!(); // pretty panics for users [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead [INFO] [stdout] --> src/main.rs:139:5 [INFO] [stdout] | [INFO] [stdout] 139 | setup_panic!(); // pretty panics for users [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead [INFO] [stdout] --> src/main.rs:139:5 [INFO] [stdout] | [INFO] [stdout] 139 | setup_panic!(); // pretty panics for users [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead [INFO] [stdout] --> src/main.rs:139:5 [INFO] [stdout] | [INFO] [stdout] 139 | setup_panic!(); // pretty panics for users [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 22s [INFO] running `Command { std: "docker" "inspect" "2ae36e09a16c1abadfca4fe12a6476a7e9fe0167108fbb819b95001cd268b509", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2ae36e09a16c1abadfca4fe12a6476a7e9fe0167108fbb819b95001cd268b509", kill_on_drop: false }` [INFO] [stdout] 2ae36e09a16c1abadfca4fe12a6476a7e9fe0167108fbb819b95001cd268b509