[INFO] cloning repository https://github.com/UQ-EORC/Sylva
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/UQ-EORC/Sylva" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FUQ-EORC%2FSylva", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FUQ-EORC%2FSylva'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 0920aa3e060b284d5b605976921ce2b4584f49ff
[INFO] checking UQ-EORC/Sylva against a7c37f9f0ee5e93396106e9de20f4a86b4154e63 for pr-129249-4
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FUQ-EORC%2FSylva" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/UQ-EORC/Sylva
[INFO] finished tweaking git repo https://github.com/UQ-EORC/Sylva
[INFO] tweaked toml for git repo https://github.com/UQ-EORC/Sylva written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/UQ-EORC/Sylva on toolchain a7c37f9f0ee5e93396106e9de20f4a86b4154e63
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a7c37f9f0ee5e93396106e9de20f4a86b4154e63" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/UQ-EORC/Sylva already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a7c37f9f0ee5e93396106e9de20f4a86b4154e63" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]  --> crates/sylva-cli/Cargo.toml:8:1
[INFO] [stderr]   |
[INFO] [stderr] 7 | repository.workspace = true
[INFO] [stderr]   | ----------
[INFO] [stderr] 8 | homepage.workspace = true
[INFO] [stderr]   | ^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `sylva-cli` (manifest) generated 1 warning
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]  --> crates/sylva-rs/Cargo.toml:8:1
[INFO] [stderr]   |
[INFO] [stderr] 7 | repository.workspace = true
[INFO] [stderr]   | ----------
[INFO] [stderr] 8 | homepage.workspace = true
[INFO] [stderr]   | ^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `sylva-rs` (manifest) generated 1 warning
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded dbase v0.8.0
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[INFO] [stderr]   Downloaded ndarray v0.17.2
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[INFO] [stderr]   Downloaded glam v0.31.1
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[INFO] [stderr]   Downloaded parquet v60.0.0
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 686d4329ed8cb10b2001945115936659198eec92bb281816c38b617755d103be
[INFO] running `Command { std: "docker" "start" "686d4329ed8cb10b2001945115936659198eec92bb281816c38b617755d103be", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "686d4329ed8cb10b2001945115936659198eec92bb281816c38b617755d103be", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "686d4329ed8cb10b2001945115936659198eec92bb281816c38b617755d103be" "/opt/rustwide/cargo-home/bin/cargo" "+a7c37f9f0ee5e93396106e9de20f4a86b4154e63" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "686d4329ed8cb10b2001945115936659198eec92bb281816c38b617755d103be", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "686d4329ed8cb10b2001945115936659198eec92bb281816c38b617755d103be" "/opt/rustwide/cargo-home/bin/cargo" "+a7c37f9f0ee5e93396106e9de20f4a86b4154e63" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]  --> crates/sylva-cli/Cargo.toml:8:1
[INFO] [stderr]   |
[INFO] [stderr] 7 | repository.workspace = true
[INFO] [stderr]   | ----------
[INFO] [stderr] 8 | homepage.workspace = true
[INFO] [stderr]   | ^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `sylva-cli` (manifest) generated 1 warning
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]  --> crates/sylva-rs/Cargo.toml:8:1
[INFO] [stderr]   |
[INFO] [stderr] 7 | repository.workspace = true
[INFO] [stderr]   | ----------
[INFO] [stderr] 8 | homepage.workspace = true
[INFO] [stderr]   | ^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `sylva-rs` (manifest) generated 1 warning
[INFO] [stderr]    Compiling unicode-ident v1.0.25
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking cfg-if v1.0.5
[INFO] [stderr]    Compiling zerocopy v0.8.57
[INFO] [stderr]    Compiling libc v0.2.189
[INFO] [stderr]    Compiling crossbeam-utils v0.8.23
[INFO] [stderr]     Checking bytemuck v1.25.2
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.21
[INFO] [stderr]    Compiling proc-macro2 v1.0.107
[INFO] [stderr]    Compiling matrixmultiply v0.3.11
[INFO] [stderr]    Compiling target-lexicon v0.13.5
[INFO] [stderr]    Compiling crossbeam-deque v0.8.8
[INFO] [stderr]    Compiling raw-cpuid v11.6.0
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling zstd-safe v8.0.0
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]     Checking safe_arch v1.2.0
[INFO] [stderr]    Compiling quote v1.0.47
[INFO] [stderr]    Compiling fixed v1.30.0
[INFO] [stderr]     Checking time v0.3.55
[INFO] [stderr]     Checking wide v1.7.1
[INFO] [stderr]    Compiling pyo3-build-config v0.29.2
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]    Compiling syn v3.0.6
[INFO] [stderr]    Compiling jobserver v0.1.35
[INFO] [stderr]    Compiling cc v1.4.6
[INFO] [stderr]     Checking num-integer v0.1.47
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]     Checking either v1.18.0
[INFO] [stderr]    Compiling yep-cache-line-size v0.9.3
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[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking num-bigint v0.5.1
[INFO] [stderr]     Checking laz v0.13.0
[INFO] [stderr]     Checking tinyvec v1.13.3
[INFO] [stderr]    Compiling zstd-sys v2.1.0+zstd.1.5.7
[INFO] [stderr]    Compiling proj4rs-geodesic v0.1.1
[INFO] [stderr]    Compiling generator v0.8.9
[INFO] [stderr]     Checking array-init v2.1.0
[INFO] [stderr]     Checking nonmax v0.5.5
[INFO] [stderr]     Checking uuid v1.26.1
[INFO] [stderr]     Checking sorted-vec v0.8.11
[INFO] [stderr]     Checking bytes v1.12.1
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]     Checking cmov v0.5.4
[INFO] [stderr]     Checking twox-hash v2.1.4
[INFO] [stderr]     Checking smallvec v1.16.2
[INFO] [stderr]     Checking robust v1.2.0
[INFO] [stderr]     Checking shapefile v0.9.0
[INFO] [stderr]     Checking spade v2.15.1
[INFO] [stderr]     Checking roxmltree v0.21.1
[INFO] [stderr]     Checking libloading v0.8.9
[INFO] [stderr]     Checking crs-definitions v0.6.0
[INFO] [stderr]    Compiling pyo3-ffi v0.29.2
[INFO] [stderr]    Compiling pyo3 v0.29.2
[INFO] [stderr]    Compiling pyo3-macros-backend v0.29.2
[INFO] [stderr]    Compiling thiserror-impl v2.0.20
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]     Checking thiserror v2.0.20
[INFO] [stderr]     Checking proj4rs v0.2.0
[INFO] [stderr]     Checking las v0.11.1
[INFO] [stderr]    Compiling zerocopy-derive v0.8.57
[INFO] [stderr]    Compiling equator-macro v0.4.2
[INFO] [stderr]    Compiling tracing-attributes v0.1.31
[INFO] [stderr]    Compiling nalgebra-macros v0.3.0
[INFO] [stderr]     Checking equator v0.4.2
[INFO] [stderr]     Checking aligned-vec v0.6.4
[INFO] [stderr]    Compiling numpy v0.29.0
[INFO] [stderr]     Checking clap_lex v1.1.1
[INFO] [stderr]    Compiling clap_derive v4.6.7
[INFO] [stderr]     Checking clap_builder v4.6.7
[INFO] [stderr]     Checking simba v0.10.2
[INFO] [stderr]     Checking tracing v0.1.44
[INFO] [stderr]     Checking ndarray v0.17.2
[INFO] [stderr]     Checking serde v1.0.229
[INFO] [stderr]     Checking geojson v1.0.0
[INFO] [stderr]     Checking rustc-hash v2.1.3
[INFO] [stderr]     Checking clap v4.6.7
[INFO] [stderr]    Compiling pyo3-macros v0.29.2
[INFO] [stderr]     Checking zstd v0.14.0
[INFO] [stderr]     Checking nalgebra v0.35.0
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking parquet v60.0.0
[INFO] [stderr]     Checking sylva-rs v0.3.0 (/opt/rustwide/workdir/crates/sylva-rs)
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u8>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]    --> crates/sylva-rs/src/voxel/traverse.rs:444:52
[INFO] [stdout]     |
[INFO] [stdout] 444 |                     let _ = a.sub[idx * n_sub + b].fetch_update(Relaxed, Relaxed, |v| v.checked_add(1));
[INFO] [stdout]     |                                                    ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]     |
[INFO] [stdout] 444 -                     let _ = a.sub[idx * n_sub + b].fetch_update(Relaxed, Relaxed, |v| v.checked_add(1));
[INFO] [stdout] 444 +                     let _ = a.sub[idx * n_sub + b].try_update(Relaxed, Relaxed, |v| v.checked_add(1));
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u8>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]    --> crates/sylva-rs/src/voxel/traverse.rs:444:52
[INFO] [stdout]     |
[INFO] [stdout] 444 |                     let _ = a.sub[idx * n_sub + b].fetch_update(Relaxed, Relaxed, |v| v.checked_add(1));
[INFO] [stdout]     |                                                    ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]     |
[INFO] [stdout] 444 -                     let _ = a.sub[idx * n_sub + b].fetch_update(Relaxed, Relaxed, |v| v.checked_add(1));
[INFO] [stdout] 444 +                     let _ = a.sub[idx * n_sub + b].try_update(Relaxed, Relaxed, |v| v.checked_add(1));
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking sylva-cli v0.3.0 (/opt/rustwide/workdir/crates/sylva-cli)
[INFO] [stderr]     Checking sylva-py v0.3.0 (/opt/rustwide/workdir/crates/sylva-py)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 45s
[INFO] running `Command { std: "docker" "inspect" "686d4329ed8cb10b2001945115936659198eec92bb281816c38b617755d103be", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "686d4329ed8cb10b2001945115936659198eec92bb281816c38b617755d103be", kill_on_drop: false }`
[INFO] [stdout] 686d4329ed8cb10b2001945115936659198eec92bb281816c38b617755d103be