[INFO] cloning repository https://github.com/MassDynamics/deseq2-rust
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MassDynamics/deseq2-rust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMassDynamics%2Fdeseq2-rust", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMassDynamics%2Fdeseq2-rust'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 734f9eda53f09febc6a488c8dd7af1d727e0ddf2
[INFO] checking MassDynamics/deseq2-rust against a7c37f9f0ee5e93396106e9de20f4a86b4154e63 for pr-129249-4
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMassDynamics%2Fdeseq2-rust" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-6-tc1/source/.cargo/config.toml
[INFO] removed /workspace/builds/worker-6-tc1/source/rust-toolchain.toml
[INFO] started tweaking git repo https://github.com/MassDynamics/deseq2-rust
[INFO] finished tweaking git repo https://github.com/MassDynamics/deseq2-rust
[INFO] tweaked toml for git repo https://github.com/MassDynamics/deseq2-rust written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/MassDynamics/deseq2-rust on toolchain a7c37f9f0ee5e93396106e9de20f4a86b4154e63
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a7c37f9f0ee5e93396106e9de20f4a86b4154e63" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/MassDynamics/deseq2-rust already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a7c37f9f0ee5e93396106e9de20f4a86b4154e63" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/MassDynamics/edge-rust`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded numpy v0.24.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] b765f975d87825fa2675a055e96d3421a710b2e20cf44420a7b2c131bff87317
[INFO] running `Command { std: "docker" "start" "b765f975d87825fa2675a055e96d3421a710b2e20cf44420a7b2c131bff87317", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b765f975d87825fa2675a055e96d3421a710b2e20cf44420a7b2c131bff87317", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b765f975d87825fa2675a055e96d3421a710b2e20cf44420a7b2c131bff87317" "/opt/rustwide/cargo-home/bin/cargo" "+a7c37f9f0ee5e93396106e9de20f4a86b4154e63" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b765f975d87825fa2675a055e96d3421a710b2e20cf44420a7b2c131bff87317", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b765f975d87825fa2675a055e96d3421a710b2e20cf44420a7b2c131bff87317" "/opt/rustwide/cargo-home/bin/cargo" "+a7c37f9f0ee5e93396106e9de20f4a86b4154e63" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]     Checking either v1.18.0
[INFO] [stderr]    Compiling serde_core v1.0.229
[INFO] [stderr]    Compiling target-lexicon v0.13.5
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]    Compiling syn v3.0.6
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.47
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]    Compiling pyo3-build-config v0.24.2
[INFO] [stderr]    Compiling pyo3-macros-backend v0.24.2
[INFO] [stderr]    Compiling pyo3-ffi v0.24.2
[INFO] [stderr]    Compiling pyo3 v0.24.2
[INFO] [stderr]    Compiling numpy v0.24.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.21
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]     Checking serde_json v1.0.151
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking thiserror v2.0.21
[INFO] [stderr]     Checking rnum v0.1.0 (https://github.com/MassDynamics/edge-rust?rev=3e14e934a3bad789581a246901c42d44db077f74#3e14e934)
[INFO] [stderr]     Checking serde v1.0.229
[INFO] [stderr]     Checking shrink-core v0.1.0 (/opt/rustwide/workdir/crates/shrink-core)
[INFO] [stderr]     Checking edger-core v0.1.0 (https://github.com/MassDynamics/edge-rust?rev=3e14e934a3bad789581a246901c42d44db077f74#3e14e934)
[INFO] [stderr]     Checking deseq2-core v0.1.0 (/opt/rustwide/workdir/crates/deseq2-core)
[INFO] [stderr]    Compiling pyo3-macros v0.24.2
[INFO] [stderr]     Checking deseq2-py v0.1.0 (/opt/rustwide/workdir/crates/deseq2-py)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 25.39s
[INFO] running `Command { std: "docker" "inspect" "b765f975d87825fa2675a055e96d3421a710b2e20cf44420a7b2c131bff87317", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b765f975d87825fa2675a055e96d3421a710b2e20cf44420a7b2c131bff87317", kill_on_drop: false }`
[INFO] [stdout] b765f975d87825fa2675a055e96d3421a710b2e20cf44420a7b2c131bff87317