[INFO] cloning repository https://github.com/SorenHeidelbach/rustymotif [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/SorenHeidelbach/rustymotif" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSorenHeidelbach%2Frustymotif", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSorenHeidelbach%2Frustymotif'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] c6d71f49c1f683cc86f0d9967026db610f02ba20 [INFO] checking SorenHeidelbach/rustymotif against 52995a223f2919dd3e2e427231db90a257350ded for pr-129249-4 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSorenHeidelbach%2Frustymotif" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/SorenHeidelbach/rustymotif [INFO] finished tweaking git repo https://github.com/SorenHeidelbach/rustymotif [INFO] tweaked toml for git repo https://github.com/SorenHeidelbach/rustymotif written to /workspace/builds/worker-4-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/SorenHeidelbach/rustymotif on toolchain 52995a223f2919dd3e2e427231db90a257350ded [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+52995a223f2919dd3e2e427231db90a257350ded" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/SorenHeidelbach/rustymotif already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+52995a223f2919dd3e2e427231db90a257350ded" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 1ff7d5b43d0ee01bb5e086d46a7707dd1fa9f92a24412bc191d90ebee2365e20 [INFO] running `Command { std: "docker" "start" "1ff7d5b43d0ee01bb5e086d46a7707dd1fa9f92a24412bc191d90ebee2365e20", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1ff7d5b43d0ee01bb5e086d46a7707dd1fa9f92a24412bc191d90ebee2365e20", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1ff7d5b43d0ee01bb5e086d46a7707dd1fa9f92a24412bc191d90ebee2365e20" "/opt/rustwide/cargo-home/bin/cargo" "+52995a223f2919dd3e2e427231db90a257350ded" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1ff7d5b43d0ee01bb5e086d46a7707dd1fa9f92a24412bc191d90ebee2365e20", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1ff7d5b43d0ee01bb5e086d46a7707dd1fa9f92a24412bc191d90ebee2365e20" "/opt/rustwide/cargo-home/bin/cargo" "+52995a223f2919dd3e2e427231db90a257350ded" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling libc v0.2.169 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling once_cell v1.20.2 [INFO] [stderr] Compiling serde v1.0.217 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Checking litemap v0.8.0 [INFO] [stderr] Checking writeable v0.6.1 [INFO] [stderr] Compiling icu_properties_data v2.0.1 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling icu_normalizer_data v2.0.0 [INFO] [stderr] Compiling pyo3-build-config v0.25.1 [INFO] [stderr] Checking regex-automata v0.4.9 [INFO] [stderr] 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zerofrom v0.1.6 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking yoke v0.8.0 [INFO] [stderr] Checking zerovec v0.11.2 [INFO] [stderr] Checking zerotrie v0.2.2 [INFO] [stderr] Checking thiserror v2.0.12 [INFO] [stderr] Checking ppv-lite86 v0.2.20 [INFO] [stderr] Checking ahash v0.8.11 [INFO] [stderr] Checking clap v4.5.40 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Compiling pyo3-macros v0.25.1 [INFO] [stderr] Checking tinystr v0.8.1 [INFO] [stderr] Checking potential_utf v0.1.2 [INFO] [stderr] Checking icu_collections v2.0.0 [INFO] [stderr] Checking icu_locale_core v2.0.0 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking icu_provider v2.0.0 [INFO] [stderr] Checking icu_properties v2.0.1 [INFO] [stderr] Checking icu_normalizer v2.0.0 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Checking idna_adapter v1.2.1 [INFO] [stderr] Checking idna v1.0.3 [INFO] [stderr] Checking url v2.5.4 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking csv v1.3.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.10.0 [INFO] [stderr] Checking serde_json v1.0.140 [INFO] [stderr] Checking seq_io v0.3.4 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking bio v2.3.0 [INFO] [stderr] Checking rust-htslib v0.49.0 [INFO] [stderr] Checking rustymotif v0.3.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `SerializeStruct` and `Serialize` [INFO] [stdout] --> src/lib/motif.rs:3:18 [INFO] [stdout] | [INFO] [stdout] 3 | use serde::ser::{Serialize, Serializer, SerializeStruct}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ToString` [INFO] [stdout] --> src/lib/pileup.rs:6:30 [INFO] [stdout] | [INFO] [stdout] 6 | use strum_macros::{EnumIter, ToString}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `debug`, `info`, and `warn` [INFO] [stdout] --> src/lib/pileup.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | use log::{debug, info, warn}; [INFO] [stdout] | ^^^^^ ^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `motif::Motif` [INFO] [stdout] --> src/lib/preprocess.rs:3:31 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::{modtype::ModType, motif::Motif, pileup, strand::Strand}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debug` [INFO] [stdout] --> src/lib/preprocess.rs:5:11 [INFO] [stdout] | [INFO] [stdout] 5 | use log::{debug, info, warn}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PyList` [INFO] [stdout] --> src/lib/preprocess.rs:9:27 [INFO] [stdout] | [INFO] [stdout] 9 | use pyo3::types::{PyDict, PyList}; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `SerializeStruct` and `Serialize` [INFO] [stdout] --> src/lib/motif.rs:3:18 [INFO] [stdout] | [INFO] [stdout] 3 | use serde::ser::{Serialize, Serializer, SerializeStruct}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ToString` [INFO] [stdout] --> src/lib/pileup.rs:6:30 [INFO] [stdout] | [INFO] [stdout] 6 | use strum_macros::{EnumIter, ToString}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `debug`, `info`, and `warn` [INFO] [stdout] --> src/lib/pileup.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | use log::{debug, info, warn}; [INFO] [stdout] | ^^^^^ ^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `motif::Motif` [INFO] [stdout] --> src/lib/preprocess.rs:3:31 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::{modtype::ModType, motif::Motif, pileup, strand::Strand}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debug` [INFO] [stdout] --> src/lib/preprocess.rs:5:11 [INFO] [stdout] | [INFO] [stdout] 5 | use log::{debug, info, warn}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PyList` [INFO] [stdout] --> src/lib/preprocess.rs:9:27 [INFO] [stdout] | [INFO] [stdout] 9 | use pyo3::types::{PyDict, PyList}; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `strum::IntoEnumIterator` [INFO] [stdout] --> src/lib/iupac.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use strum::IntoEnumIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> src/lib/pileup.rs:400:21 [INFO] [stdout] | [INFO] [stdout] 400 | Err(e) => continue, // Skip invalid records [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `strum::IntoEnumIterator` [INFO] [stdout] --> src/lib/iupac.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use strum::IntoEnumIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `line_to_byterecord` is never used [INFO] [stdout] --> src/lib/pileup.rs:532:4 [INFO] [stdout] | [INFO] [stdout] 532 | fn line_to_byterecord(line: &[u8]) -> ByteRecord { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: useless conversion to the same type: `pyo3::PyErr` [INFO] [stdout] --> src/lib/preprocess.rs:163:6 [INFO] [stdout] | [INFO] [stdout] 163 | ) -> PyResult> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this method call relies on the `impl Into for T` blanket implementation and type inference, which is a semver hazard as a new `impl Into<_>` that affects your type might be added in the future causing type inference errors [INFO] [stdout] = note: `#[deny(self_type_conversion)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `rustymotif` (lib) due to 1 previous error; 9 warnings emitted [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> src/lib/pileup.rs:400:21 [INFO] [stdout] | [INFO] [stdout] 400 | Err(e) => continue, // Skip invalid records [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `line_to_byterecord` is never used [INFO] [stdout] --> src/lib/pileup.rs:532:4 [INFO] [stdout] | [INFO] [stdout] 532 | fn line_to_byterecord(line: &[u8]) -> ByteRecord { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: useless conversion to the same type: `pyo3::PyErr` [INFO] [stdout] --> src/lib/preprocess.rs:163:6 [INFO] [stdout] | [INFO] [stdout] 163 | ) -> PyResult> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this method call relies on the `impl Into for T` blanket implementation and type inference, which is a semver hazard as a new `impl Into<_>` that affects your type might be added in the future causing type inference errors [INFO] [stdout] = note: `#[deny(self_type_conversion)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `rustymotif` (lib test) due to 1 previous error; 9 warnings emitted [INFO] running `Command { std: "docker" "inspect" "1ff7d5b43d0ee01bb5e086d46a7707dd1fa9f92a24412bc191d90ebee2365e20", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1ff7d5b43d0ee01bb5e086d46a7707dd1fa9f92a24412bc191d90ebee2365e20", kill_on_drop: false }` [INFO] [stdout] 1ff7d5b43d0ee01bb5e086d46a7707dd1fa9f92a24412bc191d90ebee2365e20