[INFO] cloning repository https://github.com/zhanif3/701
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zhanif3/701" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzhanif3%2F701", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzhanif3%2F701'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 04144afb7cf245596996350a6d5f8fa6eed1b886
[INFO] checking zhanif3/701 against 8006091eb71ae7d9e9bccb66c6122c9d68af4466 for pr-129249-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzhanif3%2F701" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/zhanif3/701
[INFO] finished tweaking git repo https://github.com/zhanif3/701
[INFO] tweaked toml for git repo https://github.com/zhanif3/701 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/zhanif3/701 on toolchain 8006091eb71ae7d9e9bccb66c6122c9d68af4466
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8006091eb71ae7d9e9bccb66c6122c9d68af4466" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/zhanif3/701 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8006091eb71ae7d9e9bccb66c6122c9d68af4466" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stdout] warning: unused import: `crate::types::Suffix`
[INFO] [stdout]  --> src/common/search.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use crate::types::Suffix;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::suffix_array`
[INFO] [stdout]  --> src/common/search.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use crate::suffix_array;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around assigned value
[INFO] [stdout]   --> src/common/search.rs:36:31
[INFO] [stdout]    |
[INFO] [stdout] 36 |             let offset_char = ((first_rows.first().unwrap().1).0);
[INFO] [stdout]    |                               ^                                 ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 36 -             let offset_char = ((first_rows.first().unwrap().1).0);
[INFO] [stdout] 36 +             let offset_char = (first_rows.first().unwrap().1).0;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rayon::iter::IntoParallelRefIterator`
[INFO] [stdout]  --> src/common/suffix_array.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use rayon::iter::IntoParallelRefIterator;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `BufRead`, `BufReader`, and `Result`
[INFO] [stdout]   --> src/common/suffix_array.rs:12:15
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::{BufRead, BufReader, Result};
[INFO] [stdout]    |               ^^^^^^^  ^^^^^^^^^  ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/common/suffix_array.rs:14:17
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `cargo-clippy`
[INFO] [stdout]   --> src/common/suffix_array.rs:17:10
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = note: using a cfg inside a derive macro will use the cfgs from the destination crate and not the ones from the defining crate
[INFO] [stdout]    = help: try referring to `Serialize` crate for guidance on how handle this unexpected cfg
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `cargo-clippy`
[INFO] [stdout]   --> src/common/suffix_array.rs:17:21
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |                     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = note: using a cfg inside a derive macro will use the cfgs from the destination crate and not the ones from the defining crate
[INFO] [stdout]    = help: try referring to `Deserialize` crate for guidance on how handle this unexpected cfg
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around type
[INFO] [stdout]   --> src/common/suffix_array.rs:45:20
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let mut s: Vec<(Suffix)> = (0 .. t.len()).map(|x: usize| {
[INFO] [stdout]    |                    ^      ^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 45 -     let mut s: Vec<(Suffix)> = (0 .. t.len()).map(|x: usize| {
[INFO] [stdout] 45 +     let mut s: Vec<Suffix> = (0 .. t.len()).map(|x: usize| {
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the `macro_use` attribute cannot be used on use statements
[INFO] [stdout]  --> src/common/search.rs:1:3
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   |   ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = help: the `macro_use` attribute can be applied to extern crates and modules
[INFO] [stdout]   = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `start`
[INFO] [stdout]   --> src/common/search.rs:45:9
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let mut start: usize;
[INFO] [stdout]    |         ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_start`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `end`
[INFO] [stdout]   --> src/common/search.rs:46:9
[INFO] [stdout]    |
[INFO] [stdout] 46 |     let mut end: usize;
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `x`
[INFO] [stdout]   --> src/common/search.rs:58:18
[INFO] [stdout]    |
[INFO] [stdout] 58 |             Some(x) => (),
[INFO] [stdout]    |                  ^ help: if this is intentional, prefix it with an underscore: `_x`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `c`
[INFO] [stdout]   --> src/common/search.rs:64:26
[INFO] [stdout]    |
[INFO] [stdout] 64 |                     Some(c) => (),
[INFO] [stdout]    |                          ^ help: if this is intentional, prefix it with an underscore: `_c`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]   --> src/common/suffix_array.rs:49:12
[INFO] [stdout]    |
[INFO] [stdout] 49 |         Ok(elapsed) => {
[INFO] [stdout]    |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/common/suffix_array.rs:53:13
[INFO] [stdout]    |
[INFO] [stdout] 53 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]   --> src/common/suffix_array.rs:63:12
[INFO] [stdout]    |
[INFO] [stdout] 63 |         Ok(elapsed) => {
[INFO] [stdout]    |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/common/suffix_array.rs:67:13
[INFO] [stdout]    |
[INFO] [stdout] 67 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]   --> src/common/suffix_array.rs:82:9
[INFO] [stdout]    |
[INFO] [stdout] 82 |     for i in 0 .. index.len() {
[INFO] [stdout]    |         ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]    --> src/common/suffix_array.rs:130:12
[INFO] [stdout]     |
[INFO] [stdout] 130 |         Ok(elapsed) => {
[INFO] [stdout]     |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/common/suffix_array.rs:134:13
[INFO] [stdout]     |
[INFO] [stdout] 134 |         Err(e) => {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]    --> src/common/suffix_array.rs:154:12
[INFO] [stdout]     |
[INFO] [stdout] 154 |         Ok(elapsed) => {
[INFO] [stdout]     |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/common/suffix_array.rs:158:13
[INFO] [stdout]     |
[INFO] [stdout] 158 |         Err(e) => {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]    --> src/common/suffix_array.rs:169:12
[INFO] [stdout]     |
[INFO] [stdout] 169 |         Ok(elapsed) => {
[INFO] [stdout]     |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/common/suffix_array.rs:173:13
[INFO] [stdout]     |
[INFO] [stdout] 173 |         Err(e) => {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `test_search_capabilities_partial` is never used
[INFO] [stdout]    --> src/common/search.rs:189:8
[INFO] [stdout]     |
[INFO] [stdout] 189 |     fn test_search_capabilities_partial() {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Counts` should have a snake case name
[INFO] [stdout]   --> src/common/search.rs:43:70
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub fn search(query: &str, zipped: &Vec<(&Nucleotide, &Nucleotide)>, Counts: &HashMap<u8, usize>) -> Option<(usize, usize)> {
[INFO] [stdout]    |                                                                      ^^^^^^ help: convert the identifier to snake case (notice the capitalization): `counts`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Counts` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:103:68
[INFO] [stdout]     |
[INFO] [stdout] 103 | fn get_pos_from_vec(rows: &Vec<&(&(char, usize), &(char, usize))>, Counts: &HashMap<u8, usize>) -> Option<(usize, usize)> {
[INFO] [stdout]     |                                                                    ^^^^^^ help: convert the identifier to snake case (notice the capitalization): `counts`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:134:13
[INFO] [stdout]     |
[INFO] [stdout] 134 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:146:13
[INFO] [stdout]     |
[INFO] [stdout] 146 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:158:13
[INFO] [stdout]     |
[INFO] [stdout] 158 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:169:13
[INFO] [stdout]     |
[INFO] [stdout] 169 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:180:13
[INFO] [stdout]     |
[INFO] [stdout] 180 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:190:13
[INFO] [stdout]     |
[INFO] [stdout] 190 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `L` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub L: Vec<Nucleotide>,
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `F` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:21:9
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub F: Vec<Nucleotide>, // Character,
[INFO] [stdout]    |         ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `Index` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:22:9
[INFO] [stdout]    |
[INFO] [stdout] 22 |     pub Index: HashMap<Nucleotide, Nucleotide>,
[INFO] [stdout]    |         ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `FCounts` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:23:9
[INFO] [stdout]    |
[INFO] [stdout] 23 |     pub FCounts: HashMap<u8, usize>,
[INFO] [stdout]    |         ^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `fcounts`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/common/suffix_array.rs:17:10
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |          ^--------
[INFO] [stdout]    |          |
[INFO] [stdout]    |          `Serialize` is not local
[INFO] [stdout]    |          move the `impl` block outside of this constant `_IMPL_SERIALIZE_FOR_LF`
[INFO] [stdout] 18 | //#[derive(Debug)]
[INFO] [stdout] 19 | pub struct LF {
[INFO] [stdout]    |            -- `LF` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Serialize` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/common/suffix_array.rs:17:21
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |                     ^----------
[INFO] [stdout]    |                     |
[INFO] [stdout]    |                     `Deserialize` is not local
[INFO] [stdout]    |                     move the `impl` block outside of this constant `_IMPL_DESERIALIZE_FOR_LF`
[INFO] [stdout] 18 | //#[derive(Debug)]
[INFO] [stdout] 19 | pub struct LF {
[INFO] [stdout]    |            -- `LF` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Deserialize` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/common/suffix_array.rs:43:24
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub fn suffix_array(t: &str) -> Vec<Suffix> {
[INFO] [stdout]    |                        ^^^^         ^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                        |
[INFO] [stdout]    |                        the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub fn suffix_array(t: &str) -> Vec<Suffix<'_>> {
[INFO] [stdout]    |                                           ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:121:9
[INFO] [stdout]     |
[INFO] [stdout] 121 |     let F: Vec<Nucleotide> = sa.iter().enumerate().map(|suffix| {
[INFO] [stdout]     |         ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:141:9
[INFO] [stdout]     |
[INFO] [stdout] 141 |     let L: Vec<Nucleotide> = sa.iter().map(|suffix| {
[INFO] [stdout]     |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Index` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:165:9
[INFO] [stdout]     |
[INFO] [stdout] 165 |     let Index: HashMap<Nucleotide, Nucleotide> = (0 .. t.len()).into_par_iter().map(|i| {
[INFO] [stdout]     |         ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:200:13
[INFO] [stdout]     |
[INFO] [stdout] 200 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:210:13
[INFO] [stdout]     |
[INFO] [stdout] 210 |         let T = "ABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::types::Suffix`
[INFO] [stdout]  --> src/common/search.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use crate::types::Suffix;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::suffix_array`
[INFO] [stdout]  --> src/common/search.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use crate::suffix_array;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around assigned value
[INFO] [stdout]   --> src/common/search.rs:36:31
[INFO] [stdout]    |
[INFO] [stdout] 36 |             let offset_char = ((first_rows.first().unwrap().1).0);
[INFO] [stdout]    |                               ^                                 ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 36 -             let offset_char = ((first_rows.first().unwrap().1).0);
[INFO] [stdout] 36 +             let offset_char = (first_rows.first().unwrap().1).0;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rayon::iter::IntoParallelRefIterator`
[INFO] [stdout]  --> src/common/suffix_array.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use rayon::iter::IntoParallelRefIterator;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `BufRead`, `BufReader`, and `Result`
[INFO] [stdout]   --> src/common/suffix_array.rs:12:15
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::{BufRead, BufReader, Result};
[INFO] [stdout]    |               ^^^^^^^  ^^^^^^^^^  ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/common/suffix_array.rs:14:17
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `cargo-clippy`
[INFO] [stdout]   --> src/common/suffix_array.rs:17:10
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = note: using a cfg inside a derive macro will use the cfgs from the destination crate and not the ones from the defining crate
[INFO] [stdout]    = help: try referring to `Serialize` crate for guidance on how handle this unexpected cfg
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `cargo-clippy`
[INFO] [stdout]   --> src/common/suffix_array.rs:17:21
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |                     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = note: using a cfg inside a derive macro will use the cfgs from the destination crate and not the ones from the defining crate
[INFO] [stdout]    = help: try referring to `Deserialize` crate for guidance on how handle this unexpected cfg
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around type
[INFO] [stdout]   --> src/common/suffix_array.rs:45:20
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let mut s: Vec<(Suffix)> = (0 .. t.len()).map(|x: usize| {
[INFO] [stdout]    |                    ^      ^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 45 -     let mut s: Vec<(Suffix)> = (0 .. t.len()).map(|x: usize| {
[INFO] [stdout] 45 +     let mut s: Vec<Suffix> = (0 .. t.len()).map(|x: usize| {
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the `macro_use` attribute cannot be used on use statements
[INFO] [stdout]  --> src/common/search.rs:1:3
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   |   ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = help: the `macro_use` attribute can be applied to extern crates and modules
[INFO] [stdout]   = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `start`
[INFO] [stdout]   --> src/common/search.rs:45:9
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let mut start: usize;
[INFO] [stdout]    |         ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_start`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `end`
[INFO] [stdout]   --> src/common/search.rs:46:9
[INFO] [stdout]    |
[INFO] [stdout] 46 |     let mut end: usize;
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `x`
[INFO] [stdout]   --> src/common/search.rs:58:18
[INFO] [stdout]    |
[INFO] [stdout] 58 |             Some(x) => (),
[INFO] [stdout]    |                  ^ help: if this is intentional, prefix it with an underscore: `_x`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `c`
[INFO] [stdout]   --> src/common/search.rs:64:26
[INFO] [stdout]    |
[INFO] [stdout] 64 |                     Some(c) => (),
[INFO] [stdout]    |                          ^ help: if this is intentional, prefix it with an underscore: `_c`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]   --> src/common/suffix_array.rs:49:12
[INFO] [stdout]    |
[INFO] [stdout] 49 |         Ok(elapsed) => {
[INFO] [stdout]    |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/common/suffix_array.rs:53:13
[INFO] [stdout]    |
[INFO] [stdout] 53 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]   --> src/common/suffix_array.rs:63:12
[INFO] [stdout]    |
[INFO] [stdout] 63 |         Ok(elapsed) => {
[INFO] [stdout]    |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/common/suffix_array.rs:67:13
[INFO] [stdout]    |
[INFO] [stdout] 67 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]   --> src/common/suffix_array.rs:82:9
[INFO] [stdout]    |
[INFO] [stdout] 82 |     for i in 0 .. index.len() {
[INFO] [stdout]    |         ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]    --> src/common/suffix_array.rs:130:12
[INFO] [stdout]     |
[INFO] [stdout] 130 |         Ok(elapsed) => {
[INFO] [stdout]     |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/common/suffix_array.rs:134:13
[INFO] [stdout]     |
[INFO] [stdout] 134 |         Err(e) => {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]    --> src/common/suffix_array.rs:154:12
[INFO] [stdout]     |
[INFO] [stdout] 154 |         Ok(elapsed) => {
[INFO] [stdout]     |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/common/suffix_array.rs:158:13
[INFO] [stdout]     |
[INFO] [stdout] 158 |         Err(e) => {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]    --> src/common/suffix_array.rs:169:12
[INFO] [stdout]     |
[INFO] [stdout] 169 |         Ok(elapsed) => {
[INFO] [stdout]     |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/common/suffix_array.rs:173:13
[INFO] [stdout]     |
[INFO] [stdout] 173 |         Err(e) => {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Counts` should have a snake case name
[INFO] [stdout]   --> src/common/search.rs:43:70
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub fn search(query: &str, zipped: &Vec<(&Nucleotide, &Nucleotide)>, Counts: &HashMap<u8, usize>) -> Option<(usize, usize)> {
[INFO] [stdout]    |                                                                      ^^^^^^ help: convert the identifier to snake case (notice the capitalization): `counts`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Counts` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:103:68
[INFO] [stdout]     |
[INFO] [stdout] 103 | fn get_pos_from_vec(rows: &Vec<&(&(char, usize), &(char, usize))>, Counts: &HashMap<u8, usize>) -> Option<(usize, usize)> {
[INFO] [stdout]     |                                                                    ^^^^^^ help: convert the identifier to snake case (notice the capitalization): `counts`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `L` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub L: Vec<Nucleotide>,
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `F` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:21:9
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub F: Vec<Nucleotide>, // Character,
[INFO] [stdout]    |         ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `Index` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:22:9
[INFO] [stdout]    |
[INFO] [stdout] 22 |     pub Index: HashMap<Nucleotide, Nucleotide>,
[INFO] [stdout]    |         ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `FCounts` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:23:9
[INFO] [stdout]    |
[INFO] [stdout] 23 |     pub FCounts: HashMap<u8, usize>,
[INFO] [stdout]    |         ^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `fcounts`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/common/suffix_array.rs:17:10
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |          ^--------
[INFO] [stdout]    |          |
[INFO] [stdout]    |          `Serialize` is not local
[INFO] [stdout]    |          move the `impl` block outside of this constant `_IMPL_SERIALIZE_FOR_LF`
[INFO] [stdout] 18 | //#[derive(Debug)]
[INFO] [stdout] 19 | pub struct LF {
[INFO] [stdout]    |            -- `LF` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Serialize` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/common/suffix_array.rs:17:21
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |                     ^----------
[INFO] [stdout]    |                     |
[INFO] [stdout]    |                     `Deserialize` is not local
[INFO] [stdout]    |                     move the `impl` block outside of this constant `_IMPL_DESERIALIZE_FOR_LF`
[INFO] [stdout] 18 | //#[derive(Debug)]
[INFO] [stdout] 19 | pub struct LF {
[INFO] [stdout]    |            -- `LF` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Deserialize` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/common/suffix_array.rs:43:24
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub fn suffix_array(t: &str) -> Vec<Suffix> {
[INFO] [stdout]    |                        ^^^^         ^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                        |
[INFO] [stdout]    |                        the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub fn suffix_array(t: &str) -> Vec<Suffix<'_>> {
[INFO] [stdout]    |                                           ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:121:9
[INFO] [stdout]     |
[INFO] [stdout] 121 |     let F: Vec<Nucleotide> = sa.iter().enumerate().map(|suffix| {
[INFO] [stdout]     |         ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:141:9
[INFO] [stdout]     |
[INFO] [stdout] 141 |     let L: Vec<Nucleotide> = sa.iter().map(|suffix| {
[INFO] [stdout]     |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Index` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:165:9
[INFO] [stdout]     |
[INFO] [stdout] 165 |     let Index: HashMap<Nucleotide, Nucleotide> = (0 .. t.len()).into_par_iter().map(|i| {
[INFO] [stdout]     |         ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/main.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Deserialize` and `Serialize`
[INFO] [stdout]  --> src/bin/main.rs:5:13
[INFO] [stdout]   |
[INFO] [stdout] 5 | use serde::{Serialize, Deserialize};
[INFO] [stdout]   |             ^^^^^^^^^  ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]   --> src/bin/main.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::io::Read;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]   --> src/bin/main.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::iter::repeat;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]   --> src/bin/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::collections::HashMap;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/main.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/main.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/main.rs:20:44
[INFO] [stdout]    |
[INFO] [stdout] 20 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/main.rs:23:17
[INFO] [stdout]    |
[INFO] [stdout] 23 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bwt_rosalind.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/bwt_rosalind.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::prelude::*;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::iter::repeat;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `IntoParallelRefIterator` and `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:20:19
[INFO] [stdout]    |
[INFO] [stdout] 20 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                   ^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Duration` and `SystemTime`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:23:17
[INFO] [stdout]    |
[INFO] [stdout] 23 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^  ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::io::Read;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::io::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::iter::repeat;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::collections::HashSet;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::str;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::borrow::Borrow`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::borrow::Borrow;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:15:17
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the `macro_use` attribute cannot be used on use statements
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:1:3
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   |   ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = help: the `macro_use` attribute can be applied to extern crates and modules
[INFO] [stdout]   = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rayon::iter::IndexedParallelIterator`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 | use rayon::iter::IndexedParallelIterator;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rayon::iter::ParallelIterator`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | use rayon::iter::ParallelIterator;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:39:9
[INFO] [stdout]    |
[INFO] [stdout] 39 |     for i in 0 .. index.len() {
[INFO] [stdout]    |         ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:63:9
[INFO] [stdout]    |
[INFO] [stdout] 63 |     let mut stripped = contents.replace('\n', "");
[INFO] [stdout]    |         ----^^^^^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `final_char`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 64 |     let final_char = stripped.chars().last().expect("Something went wrong when getting the last character. Does the file have conten...
[INFO] [stdout]    |         ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_final_char`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `original_string`
[INFO] [stdout]   --> src/bin/main.rs:80:9
[INFO] [stdout]    |
[INFO] [stdout] 80 |     let original_string = common::suffix_array::reverse_bwt(&lf.Index);
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_original_string`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `g`
[INFO] [stdout]    --> src/bin/main.rs:108:9
[INFO] [stdout]     |
[INFO] [stdout] 108 |     let g = bincode::serialize_into(&mut lf_buffer, &lf);
[INFO] [stdout]     |         ^ help: if this is intentional, prefix it with an underscore: `_g`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `suffix_strings`
[INFO] [stdout]    --> src/bin/main.rs:131:9
[INFO] [stdout]     |
[INFO] [stdout] 131 |     let suffix_strings: Vec<&str> = (positions.1).iter().map(|x| {
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_suffix_strings`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/main.rs:36:9
[INFO] [stdout]    |
[INFO] [stdout] 36 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:70:19
[INFO] [stdout]    |
[INFO] [stdout] 70 | pub fn generate_l(T: &str) -> Vec<Nuc> {
[INFO] [stdout]    |                   ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/all_in_one.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/all_in_one.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/search_client.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/search_client.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:73:9
[INFO] [stdout]    |
[INFO] [stdout] 73 |     let L: Vec<Nucleotide> = T.as_bytes().iter().map(|c| {
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]  --> src/bin/search_client.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::io::Read;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:80:19
[INFO] [stdout]    |
[INFO] [stdout] 80 | pub fn generate_f(T: &str) -> Vec<Nuc> {
[INFO] [stdout]    |                   ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> src/bin/search_client.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:83:13
[INFO] [stdout]    |
[INFO] [stdout] 83 |     let mut F: Vec<Nucleotide> = T.as_bytes().iter().map(|c| {
[INFO] [stdout]    |             ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:101:9
[INFO] [stdout]     |
[INFO] [stdout] 101 |     let T = file_contents.as_str();
[INFO] [stdout]     |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]  --> src/bin/search_client.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::io::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:103:9
[INFO] [stdout]     |
[INFO] [stdout] 103 |     let L = generate_l(&T);
[INFO] [stdout]     |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]  --> src/bin/search_client.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::iter::repeat;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:104:9
[INFO] [stdout]     |
[INFO] [stdout] 104 |     let F = generate_f(&T);
[INFO] [stdout]     |         ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Index` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:106:9
[INFO] [stdout]     |
[INFO] [stdout] 106 |     let Index: HashMap<Nucleotide, Nucleotide> = (0..T.len()).map(|i| {
[INFO] [stdout]     |         ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `ROSALIND_TEST_TRUE` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:125:8
[INFO] [stdout]     |
[INFO] [stdout] 125 |     fn ROSALIND_TEST_TRUE() {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `rosalind_test_true`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:126:13
[INFO] [stdout]     |
[INFO] [stdout] 126 |         let T = "TTCCTAACG$A";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:127:13
[INFO] [stdout]     |
[INFO] [stdout] 127 |         let L = generate_l(&T);
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:128:13
[INFO] [stdout]     |
[INFO] [stdout] 128 |         let F = generate_f(&T);
[INFO] [stdout]     |             ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Index` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:129:13
[INFO] [stdout]     |
[INFO] [stdout] 129 |         let Index: HashMap<Nucleotide, Nucleotide> = (0..T.len()).map(|i| {
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/bin/search_client.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/search_client.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str`
[INFO] [stdout]   --> src/bin/search_client.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::str;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/search_client.rs:16:44
[INFO] [stdout]    |
[INFO] [stdout] 16 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]   --> src/bin/all_in_one.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::io::Read;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]   --> src/bin/all_in_one.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::fs::File;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]   --> src/bin/all_in_one.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::prelude::*;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]   --> src/bin/all_in_one.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::iter::repeat;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]   --> src/bin/all_in_one.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::collections::HashMap;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/all_in_one.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str`
[INFO] [stdout]   --> src/bin/all_in_one.rs:16:5
[INFO] [stdout]    |
[INFO] [stdout] 16 | use std::str;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/all_in_one.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/all_in_one.rs:20:44
[INFO] [stdout]    |
[INFO] [stdout] 20 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/all_in_one.rs:23:17
[INFO] [stdout]    |
[INFO] [stdout] 23 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bwt_rosalind.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/bwt_rosalind.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::prelude::*;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::iter::repeat;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `IntoParallelRefIterator` and `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:20:19
[INFO] [stdout]    |
[INFO] [stdout] 20 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                   ^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Duration` and `SystemTime`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:23:17
[INFO] [stdout]    |
[INFO] [stdout] 23 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^  ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/all_in_one.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/all_in_one.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]   --> src/bin/all_in_one.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::io::Read;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]   --> src/bin/all_in_one.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::fs::File;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]   --> src/bin/all_in_one.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::prelude::*;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]   --> src/bin/all_in_one.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::iter::repeat;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]   --> src/bin/all_in_one.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::collections::HashMap;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/all_in_one.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str`
[INFO] [stdout]   --> src/bin/all_in_one.rs:16:5
[INFO] [stdout]    |
[INFO] [stdout] 16 | use std::str;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/all_in_one.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/all_in_one.rs:20:44
[INFO] [stdout]    |
[INFO] [stdout] 20 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/all_in_one.rs:23:17
[INFO] [stdout]    |
[INFO] [stdout] 23 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/bin/main.rs:109:5
[INFO] [stdout]     |
[INFO] [stdout] 109 |     lf_buffer.flush();
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 109 |     let _ = lf_buffer.flush();
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rayon::iter::IndexedParallelIterator`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 | use rayon::iter::IndexedParallelIterator;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rayon::iter::ParallelIterator`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | use rayon::iter::ParallelIterator;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:39:9
[INFO] [stdout]    |
[INFO] [stdout] 39 |     for i in 0 .. index.len() {
[INFO] [stdout]    |         ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:63:9
[INFO] [stdout]    |
[INFO] [stdout] 63 |     let mut stripped = contents.replace('\n', "");
[INFO] [stdout]    |         ----^^^^^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `final_char`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 64 |     let final_char = stripped.chars().last().expect("Something went wrong when getting the last character. Does the file have conten...
[INFO] [stdout]    |         ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_final_char`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:70:19
[INFO] [stdout]    |
[INFO] [stdout] 70 | pub fn generate_l(T: &str) -> Vec<Nuc> {
[INFO] [stdout]    |                   ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:73:9
[INFO] [stdout]    |
[INFO] [stdout] 73 |     let L: Vec<Nucleotide> = T.as_bytes().iter().map(|c| {
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:80:19
[INFO] [stdout]    |
[INFO] [stdout] 80 | pub fn generate_f(T: &str) -> Vec<Nuc> {
[INFO] [stdout]    |                   ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:83:13
[INFO] [stdout]    |
[INFO] [stdout] 83 |     let mut F: Vec<Nucleotide> = T.as_bytes().iter().map(|c| {
[INFO] [stdout]    |             ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:101:9
[INFO] [stdout]     |
[INFO] [stdout] 101 |     let T = file_contents.as_str();
[INFO] [stdout]     |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:103:9
[INFO] [stdout]     |
[INFO] [stdout] 103 |     let L = generate_l(&T);
[INFO] [stdout]     |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:104:9
[INFO] [stdout]     |
[INFO] [stdout] 104 |     let F = generate_f(&T);
[INFO] [stdout]     |         ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/bin/search_client.rs:24:9
[INFO] [stdout]    |
[INFO] [stdout] 24 |     let mut lf_buffer = fs::read("lf.bincode")?;
[INFO] [stdout]    |         ----^^^^^^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Index` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:106:9
[INFO] [stdout]     |
[INFO] [stdout] 106 |     let Index: HashMap<Nucleotide, Nucleotide> = (0..T.len()).map(|i| {
[INFO] [stdout]     |         ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/all_in_one.rs:45:13
[INFO] [stdout]    |
[INFO] [stdout] 45 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/all_in_one.rs:58:13
[INFO] [stdout]    |
[INFO] [stdout] 58 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `original_string`
[INFO] [stdout]   --> src/bin/all_in_one.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 64 |     let original_string = common::suffix_array::reverse_bwt(&lf.Index);
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_original_string`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/all_in_one.rs:75:13
[INFO] [stdout]    |
[INFO] [stdout] 75 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/all_in_one.rs:35:9
[INFO] [stdout]    |
[INFO] [stdout] 35 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/search_client.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/search_client.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]  --> src/bin/search_client.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::io::Read;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> src/bin/search_client.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]  --> src/bin/search_client.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::io::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]  --> src/bin/search_client.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::iter::repeat;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/bin/search_client.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/search_client.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str`
[INFO] [stdout]   --> src/bin/search_client.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::str;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/search_client.rs:16:44
[INFO] [stdout]    |
[INFO] [stdout] 16 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]  --> src/benches/my_benchmark.rs:9:44
[INFO] [stdout]   |
[INFO] [stdout] 9 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]   |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:57:13
[INFO] [stdout]    |
[INFO] [stdout] 57 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:74:13
[INFO] [stdout]    |
[INFO] [stdout] 74 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:45:9
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::sync::Arc`
[INFO] [stdout]   --> src/benches/my_benchmark.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::sync::Arc;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/main.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Deserialize` and `Serialize`
[INFO] [stdout]  --> src/bin/main.rs:5:13
[INFO] [stdout]   |
[INFO] [stdout] 5 | use serde::{Serialize, Deserialize};
[INFO] [stdout]   |             ^^^^^^^^^  ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]   --> src/bin/main.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::io::Read;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]   --> src/bin/main.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::iter::repeat;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]   --> src/bin/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::collections::HashMap;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/main.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/main.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/main.rs:20:44
[INFO] [stdout]    |
[INFO] [stdout] 20 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/main.rs:23:17
[INFO] [stdout]    |
[INFO] [stdout] 23 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::io::Read;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::io::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::iter::repeat;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::collections::HashSet;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/bin/search_client.rs:24:9
[INFO] [stdout]    |
[INFO] [stdout] 24 |     let mut lf_buffer = fs::read("lf.bincode")?;
[INFO] [stdout]    |         ----^^^^^^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::str;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::borrow::Borrow`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::borrow::Borrow;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:15:17
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the `macro_use` attribute cannot be used on use statements
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:1:3
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   |   ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = help: the `macro_use` attribute can be applied to extern crates and modules
[INFO] [stdout]   = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/all_in_one.rs:45:13
[INFO] [stdout]    |
[INFO] [stdout] 45 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/all_in_one.rs:58:13
[INFO] [stdout]    |
[INFO] [stdout] 58 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `original_string`
[INFO] [stdout]   --> src/bin/all_in_one.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 64 |     let original_string = common::suffix_array::reverse_bwt(&lf.Index);
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_original_string`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/all_in_one.rs:75:13
[INFO] [stdout]    |
[INFO] [stdout] 75 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/all_in_one.rs:35:9
[INFO] [stdout]    |
[INFO] [stdout] 35 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fibonacci` is never used
[INFO] [stdout]   --> src/benches/my_benchmark.rs:20:4
[INFO] [stdout]    |
[INFO] [stdout] 20 | fn fibonacci(n: u64) -> u64 {
[INFO] [stdout]    |    ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `criterion_benchmark` is never used
[INFO] [stdout]   --> src/benches/my_benchmark.rs:28:4
[INFO] [stdout]    |
[INFO] [stdout] 28 | fn criterion_benchmark(c: &mut Criterion) {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `sa_benchmark` is never used
[INFO] [stdout]   --> src/benches/my_benchmark.rs:32:4
[INFO] [stdout]    |
[INFO] [stdout] 32 | fn sa_benchmark(c: &mut Criterion) {
[INFO] [stdout]    |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `reverse_benchmark` is never used
[INFO] [stdout]   --> src/benches/my_benchmark.rs:60:4
[INFO] [stdout]    |
[INFO] [stdout] 60 | fn reverse_benchmark(c: &mut Criterion) {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `parallel_search_benchmark` is never used
[INFO] [stdout]   --> src/benches/my_benchmark.rs:94:4
[INFO] [stdout]    |
[INFO] [stdout] 94 | fn parallel_search_benchmark(c: &mut Criterion) {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `sarr_benchmark` is never used
[INFO] [stdout]    --> src/benches/my_benchmark.rs:107:4
[INFO] [stdout]     |
[INFO] [stdout] 107 | fn sarr_benchmark(c: &mut Criterion) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/benches/my_benchmark.rs:62:9
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/benches/my_benchmark.rs:76:9
[INFO] [stdout]    |
[INFO] [stdout] 76 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:57:13
[INFO] [stdout]    |
[INFO] [stdout] 57 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:74:13
[INFO] [stdout]    |
[INFO] [stdout] 74 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:45:9
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `original_string`
[INFO] [stdout]   --> src/bin/main.rs:80:9
[INFO] [stdout]    |
[INFO] [stdout] 80 |     let original_string = common::suffix_array::reverse_bwt(&lf.Index);
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_original_string`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `g`
[INFO] [stdout]    --> src/bin/main.rs:108:9
[INFO] [stdout]     |
[INFO] [stdout] 108 |     let g = bincode::serialize_into(&mut lf_buffer, &lf);
[INFO] [stdout]     |         ^ help: if this is intentional, prefix it with an underscore: `_g`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `suffix_strings`
[INFO] [stdout]    --> src/bin/main.rs:131:9
[INFO] [stdout]     |
[INFO] [stdout] 131 |     let suffix_strings: Vec<&str> = (positions.1).iter().map(|x| {
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_suffix_strings`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/main.rs:36:9
[INFO] [stdout]    |
[INFO] [stdout] 36 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/bin/main.rs:109:5
[INFO] [stdout]     |
[INFO] [stdout] 109 |     lf_buffer.flush();
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 109 |     let _ = lf_buffer.flush();
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 20.56s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: criterion v0.2.11, rand_core v0.4.0
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "c1bd5689d3fe585cb4fdf5df78d7c073fe62092ef25551932823369e50178566", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c1bd5689d3fe585cb4fdf5df78d7c073fe62092ef25551932823369e50178566", kill_on_drop: false }`
[INFO] [stdout] c1bd5689d3fe585cb4fdf5df78d7c073fe62092ef25551932823369e50178566
