[INFO] fetching crate velocyto-rs 0.1.0...
[INFO] checking velocyto-rs-0.1.0 against 8006091eb71ae7d9e9bccb66c6122c9d68af4466 for pr-129249-3
[INFO] extracting crate velocyto-rs 0.1.0 into /workspace/builds/worker-2-tc1/source
[INFO] started tweaking crates.io crate velocyto-rs 0.1.0
[INFO] finished tweaking crates.io crate velocyto-rs 0.1.0
[INFO] tweaked toml for crates.io crate velocyto-rs 0.1.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate velocyto-rs 0.1.0 on toolchain 8006091eb71ae7d9e9bccb66c6122c9d68af4466
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8006091eb71ae7d9e9bccb66c6122c9d68af4466" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate velocyto-rs 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8006091eb71ae7d9e9bccb66c6122c9d68af4466" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:101:12
[INFO] [stderr]     |
[INFO] [stderr] 101 | homepage = "https://github.com/zqfang/velocyto-rs"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 107 | repository = "https://github.com/zqfang/velocyto-rs"
[INFO] [stderr]     |              ---------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `velocyto-rs` (manifest) generated 1 warning
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded thiserror v2.0.18
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[INFO] [stderr]   Downloaded simba v0.8.1
[INFO] [stderr]   Downloaded rand_distr v0.4.3
[INFO] [stderr]   Downloaded matrixmultiply v0.3.10
[INFO] [stderr]   Downloaded noodles-bgzf v0.47.0
[INFO] [stderr]   Downloaded noodles-bam v0.90.0
[INFO] [stderr]   Downloaded clap v4.6.1
[INFO] [stderr]   Downloaded getrandom v0.4.2
[INFO] [stderr]   Downloaded wit-bindgen-rust v0.51.0
[INFO] [stderr]   Downloaded prettyplease v0.2.37
[INFO] [stderr]   Downloaded safe_arch v0.7.4
[INFO] [stderr]   Downloaded bytemuck v1.25.0
[INFO] [stderr]   Downloaded noodles-sam v0.85.0
[INFO] [stderr]   Downloaded syn v2.0.117
[INFO] [stderr]   Downloaded wit-bindgen v0.51.0
[INFO] [stderr]   Downloaded wasm-encoder v0.244.0
[INFO] [stderr]   Downloaded rand v0.8.6
[INFO] [stderr]   Downloaded wide v0.7.33
[INFO] [stderr]   Downloaded jiff-static v0.2.27
[INFO] [stderr]   Downloaded argmin v0.10.0
[INFO] [stderr]   Downloaded memchr v2.8.0
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.48
[INFO] [stderr]   Downloaded wasip3 v0.4.0+wasi-0.3.0-rc-2026-01-06
[INFO] [stderr]   Downloaded sprs v0.11.1
[INFO] [stderr]   Downloaded linfa v0.7.1
[INFO] [stderr]   Downloaded wasip2 v1.0.3+wasi-0.2.9
[INFO] [stderr]   Downloaded regex v1.12.3
[INFO] [stderr]   Downloaded portable-atomic v1.13.1
[INFO] [stderr]   Downloaded wit-parser v0.244.0
[INFO] [stderr]   Downloaded statrs v0.17.1
[INFO] [stderr]   Downloaded clap_builder v4.6.0
[INFO] [stderr]   Downloaded zlib-rs v0.6.3
[INFO] [stderr]   Downloaded wasmparser v0.244.0
[INFO] [stderr]   Downloaded wit-component v0.244.0
[INFO] [stderr]   Downloaded zerocopy v0.8.48
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded regex-syntax v0.8.10
[INFO] [stderr]   Downloaded nalgebra v0.32.6
[INFO] [stderr]   Downloaded bstr v1.12.1
[INFO] [stderr]   Downloaded regex-automata v0.4.14
[INFO] [stderr]   Downloaded jiff v0.2.27
[INFO] [stderr]   Downloaded libc v0.2.186
[INFO] [stderr]   Downloaded hdf5-pure-rust v0.3.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] c874544ff7c5336e9b95fa22aef27ee2ac16fb1875007a08ce54ad5c16f341dd
[INFO] running `Command { std: "docker" "start" "c874544ff7c5336e9b95fa22aef27ee2ac16fb1875007a08ce54ad5c16f341dd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c874544ff7c5336e9b95fa22aef27ee2ac16fb1875007a08ce54ad5c16f341dd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c874544ff7c5336e9b95fa22aef27ee2ac16fb1875007a08ce54ad5c16f341dd" "/opt/rustwide/cargo-home/bin/cargo" "+8006091eb71ae7d9e9bccb66c6122c9d68af4466" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c874544ff7c5336e9b95fa22aef27ee2ac16fb1875007a08ce54ad5c16f341dd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c874544ff7c5336e9b95fa22aef27ee2ac16fb1875007a08ce54ad5c16f341dd" "/opt/rustwide/cargo-home/bin/cargo" "+8006091eb71ae7d9e9bccb66c6122c9d68af4466" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:101:12
[INFO] [stderr]     |
[INFO] [stderr] 101 | homepage = "https://github.com/zqfang/velocyto-rs"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 107 | repository = "https://github.com/zqfang/velocyto-rs"
[INFO] [stderr]     |              ---------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `velocyto-rs` (manifest) generated 1 warning
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]     Checking either v1.16.0
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking zlib-rs v0.6.3
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling linfa v0.7.1
[INFO] [stderr]     Checking bitflags v2.11.1
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking rand v0.8.6
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking approx v0.4.0
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking noisy_float v0.2.1
[INFO] [stderr]    Compiling siphasher v1.0.3
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]     Checking noodles-bgzf v0.47.0
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]    Compiling phf_shared v0.11.3
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]     Checking noodles-core v0.20.0
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]     Checking order-stat v0.1.3
[INFO] [stderr]     Checking simd-adler32 v0.3.9
[INFO] [stderr]     Checking bit-vec v0.9.1
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]     Checking simba v0.8.1
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking rand_xoshiro v0.6.0
[INFO] [stderr]     Checking typenum v1.20.0
[INFO] [stderr]     Checking noodles-csi v0.56.0
[INFO] [stderr]     Checking log v0.4.30
[INFO] [stderr]     Checking clap_builder v4.6.0
[INFO] [stderr]     Checking rustix v1.1.4
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking noodles-sam v0.85.0
[INFO] [stderr]     Checking regex v1.12.3
[INFO] [stderr]     Checking env_filter v1.0.1
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking getrandom v0.4.2
[INFO] [stderr]     Checking fastrand v2.4.1
[INFO] [stderr]     Checking once_cell v1.21.4
[INFO] [stderr]     Checking jiff v0.2.27
[INFO] [stderr]     Checking noodles-bam v0.90.0
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling phf_macros v0.11.3
[INFO] [stderr]    Compiling hdf5-pure-rust-derive v0.3.6
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]     Checking phf v0.11.3
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking kdtree v0.7.0
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking nalgebra v0.32.6
[INFO] [stderr]     Checking clap v4.6.1
[INFO] [stderr]     Checking sprs v0.11.1
[INFO] [stderr]     Checking ndarray-stats v0.5.1
[INFO] [stderr]     Checking argmin-math v0.4.0
[INFO] [stderr]     Checking ndarray-rand v0.14.0
[INFO] [stderr]     Checking linfa-linalg v0.1.0
[INFO] [stderr]     Checking hdf5-pure-rust v0.3.6
[INFO] [stderr]     Checking env_logger v0.11.10
[INFO] [stderr]     Checking linfa-nn v0.7.2
[INFO] [stderr]     Checking argmin v0.10.0
[INFO] [stderr]     Checking linfa-kernel v0.7.1
[INFO] [stderr]     Checking linfa-reduction v0.7.1
[INFO] [stderr]     Checking statrs v0.17.1
[INFO] [stderr]     Checking velocyto-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused dependency `argmin`
[INFO] [stderr]  --> Cargo.toml:8:15
[INFO] [stderr]   |
[INFO] [stderr] 8 | [dependencies.argmin]
[INFO] [stderr]   |               ^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `argmin`
[INFO] [stderr] warning: unused dependency `linfa-reduction`
[INFO] [stderr]   --> Cargo.toml:34:15
[INFO] [stderr]    |
[INFO] [stderr] 34 | [dependencies.linfa-reduction]
[INFO] [stderr]    |               ^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `linfa-reduction`
[INFO] [stderr] warning: unused dependency `thiserror`
[INFO] [stderr]   --> Cargo.toml:79:15
[INFO] [stderr]    |
[INFO] [stderr] 79 | [dependencies.thiserror]
[INFO] [stderr]    |               ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `thiserror`
[INFO] [stderr] warning: `velocyto-rs` (manifest) generated 3 warnings
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 29s
[INFO] running `Command { std: "docker" "inspect" "c874544ff7c5336e9b95fa22aef27ee2ac16fb1875007a08ce54ad5c16f341dd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c874544ff7c5336e9b95fa22aef27ee2ac16fb1875007a08ce54ad5c16f341dd", kill_on_drop: false }`
[INFO] [stdout] c874544ff7c5336e9b95fa22aef27ee2ac16fb1875007a08ce54ad5c16f341dd
