[INFO] cloning repository https://github.com/SantosJGND/M2M
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/SantosJGND/M2M" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSantosJGND%2FM2M", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSantosJGND%2FM2M'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] eb8481cf333f96c78b37e354a66cfd4a358a1c00
[INFO] checking SantosJGND/M2M against 8006091eb71ae7d9e9bccb66c6122c9d68af4466 for pr-129249-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSantosJGND%2FM2M" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/SantosJGND/M2M
[INFO] finished tweaking git repo https://github.com/SantosJGND/M2M
[INFO] tweaked toml for git repo https://github.com/SantosJGND/M2M written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/SantosJGND/M2M on toolchain 8006091eb71ae7d9e9bccb66c6122c9d68af4466
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8006091eb71ae7d9e9bccb66c6122c9d68af4466" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/SantosJGND/M2M already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8006091eb71ae7d9e9bccb66c6122c9d68af4466" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded dtoa v1.0.9
[INFO] [stderr]   Downloaded speedytree v0.1.0
[INFO] [stderr]   Downloaded rb_tree v0.5.0
[INFO] [stderr]   Downloaded redox_syscall v0.5.3
[INFO] [stderr]   Downloaded anstyle v1.0.8
[INFO] [stderr]   Downloaded anstyle-wincon v3.0.4
[INFO] [stderr]   Downloaded thiserror-impl v1.0.63
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded clap_derive v4.5.13
[INFO] [stderr]   Downloaded colorchoice v1.0.2
[INFO] [stderr]   Downloaded anstyle-query v1.1.1
[INFO] [stderr]   Downloaded pkg-config v0.3.30
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded anstream v0.6.15
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded anstyle-parse v0.2.5
[INFO] [stderr]   Downloaded cmake v0.1.51
[INFO] [stderr]   Downloaded wasm-bindgen-shared v0.2.116
[INFO] [stderr]   Downloaded thiserror v1.0.63
[INFO] [stderr]   Downloaded ordered-float v4.2.2
[INFO] [stderr]   Downloaded clap v4.5.16
[INFO] [stderr]   Downloaded openssl-sys v0.9.103
[INFO] [stderr]   Downloaded wasm-bindgen v0.2.116
[INFO] [stderr]   Downloaded wasm-bindgen-macro v0.2.116
[INFO] [stderr]   Downloaded wasm-bindgen-macro-support v0.2.116
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded cc v1.1.15
[INFO] [stderr]   Downloaded rust-htslib v0.47.0
[INFO] [stderr]   Downloaded js-sys v0.3.93
[INFO] [stderr]   Downloaded clap_builder v4.5.15
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bindgen v0.69.4
[INFO] [stderr]   Downloaded bam v0.1.4
[INFO] [stderr]   Downloaded libc v0.2.158
[INFO] [stderr]   Downloaded web-sys v0.3.93
[INFO] [stderr]   Downloaded libz-sys v1.1.20
[INFO] [stderr]   Downloaded curl-sys v0.4.74+curl-8.9.0
[INFO] [stderr]   Downloaded hts-sys v2.1.4
[INFO] [stderr]   Downloaded openssl-src v300.3.1+3.3.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] a703f7a260b7f735343e062d6c8d32971550bb870b02e9cfdf9d362090013911
[INFO] running `Command { std: "docker" "start" "a703f7a260b7f735343e062d6c8d32971550bb870b02e9cfdf9d362090013911", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a703f7a260b7f735343e062d6c8d32971550bb870b02e9cfdf9d362090013911", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a703f7a260b7f735343e062d6c8d32971550bb870b02e9cfdf9d362090013911" "/opt/rustwide/cargo-home/bin/cargo" "+8006091eb71ae7d9e9bccb66c6122c9d68af4466" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a703f7a260b7f735343e062d6c8d32971550bb870b02e9cfdf9d362090013911", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a703f7a260b7f735343e062d6c8d32971550bb870b02e9cfdf9d362090013911" "/opt/rustwide/cargo-home/bin/cargo" "+8006091eb71ae7d9e9bccb66c6122c9d68af4466" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]    Compiling autocfg v1.3.0
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]     Checking memchr v2.7.4
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling regex-syntax v0.8.4
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]    Compiling libloading v0.8.5
[INFO] [stderr]    Compiling bindgen v0.69.4
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]    Compiling rustversion v1.0.17
[INFO] [stderr]     Checking bytemuck v1.23.1
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking anstyle-parse v0.2.5
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling bitflags v2.6.0
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling thiserror v1.0.63
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling rustc-hash v1.1.0
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[INFO] [stderr]    Compiling syn v2.0.87
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[INFO] [stderr]    Compiling anyhow v1.0.98
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[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling thiserror v2.0.12
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[INFO] [stderr]     Checking unicode-normalization v0.1.23
[INFO] [stderr]     Checking tap v1.0.1
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]     Checking unicode-bidi v0.3.15
[INFO] [stderr]     Checking smallvec v1.13.2
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[INFO] [stderr]     Checking parking_lot_core v0.9.10
[INFO] [stderr]     Checking rayon v1.10.0
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[INFO] [stderr]    Compiling cmake v0.1.51
[INFO] [stderr]    Compiling openssl-src v300.3.1+3.3.1
[INFO] [stderr]     Checking simba v0.9.0
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]     Checking csv-core v0.1.12
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking funty v2.0.0
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling serde_json v1.0.143
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking once_cell v1.21.4
[INFO] [stderr]    Compiling libz-sys v1.1.20
[INFO] [stderr]    Compiling openssl-sys v0.9.103
[INFO] [stderr]    Compiling curl-sys v0.4.74+curl-8.9.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking bitvec v1.0.1
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking flate2 v1.1.2
[INFO] [stderr]     Checking parking_lot v0.12.3
[INFO] [stderr]     Checking url v2.5.2
[INFO] [stderr]    Compiling regex v1.10.6
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v5.0.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking rb_tree v0.5.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking plotters-backend v0.3.7
[INFO] [stderr]     Checking ciborium-io v0.2.2
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking dtoa v1.0.9
[INFO] [stderr]     Checking plotters-svg v0.3.7
[INFO] [stderr]     Checking bam v0.1.4
[INFO] [stderr]     Checking ordered-float v4.2.2
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]     Checking cast v0.3.0
[INFO] [stderr]     Checking plotters v0.3.7
[INFO] [stderr]     Checking criterion-plot v0.5.0
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking is-terminal v0.4.17
[INFO] [stderr]     Checking oorandom v11.1.5
[INFO] [stderr]     Checking anes v0.1.6
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling zerocopy-derive v0.8.27
[INFO] [stderr]    Compiling thiserror-impl v1.0.63
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling clap_derive v4.5.13
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]     Checking clap v4.5.16
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking speedytree v0.1.0
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking nalgebra v0.33.2
[INFO] [stderr]     Checking ciborium-ll v0.2.2
[INFO] [stderr]    Compiling hts-sys v2.1.4
[INFO] [stderr]     Checking csv v1.3.1
[INFO] [stderr]     Checking multimap v0.10.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking ciborium v0.2.2
[INFO] [stderr]     Checking tinytemplate v1.2.1
[INFO] [stderr]     Checking criterion v0.5.1
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking bio v2.3.0
[INFO] [stderr]     Checking rust-htslib v0.47.0
[INFO] [stderr]     Checking mapping_to_matrix v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused dependency `bam`
[INFO] [stderr]  --> Cargo.toml:7:1
[INFO] [stderr]   |
[INFO] [stderr] 7 | bam = "0.1.4"
[INFO] [stderr]   | ^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `bam`
[INFO] [stderr] warning: unused dependency `bio`
[INFO] [stderr]  --> Cargo.toml:8:1
[INFO] [stderr]   |
[INFO] [stderr] 8 | bio = "2.3.0"
[INFO] [stderr]   | ^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: consider removing the dependency on `bio`
[INFO] [stderr] warning: `mapping_to_matrix` (manifest) generated 2 warnings
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 48s
[INFO] running `Command { std: "docker" "inspect" "a703f7a260b7f735343e062d6c8d32971550bb870b02e9cfdf9d362090013911", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a703f7a260b7f735343e062d6c8d32971550bb870b02e9cfdf9d362090013911", kill_on_drop: false }`
[INFO] [stdout] a703f7a260b7f735343e062d6c8d32971550bb870b02e9cfdf9d362090013911