[INFO] cloning repository https://github.com/lgi-onehealth/phcue-qc
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lgi-onehealth/phcue-qc" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d5810d5e1714d5b70501b507a4fc9ed96e8c50d5
[INFO] checking lgi-onehealth/phcue-qc against master#e08b80c0fb7667bdcd040761891701e576c42ec8 for pr-129021
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/lgi-onehealth/phcue-qc on toolchain e08b80c0fb7667bdcd040761891701e576c42ec8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e08b80c0fb7667bdcd040761891701e576c42ec8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/lgi-onehealth/phcue-qc
[INFO] finished tweaking git repo https://github.com/lgi-onehealth/phcue-qc
[INFO] tweaked toml for git repo https://github.com/lgi-onehealth/phcue-qc written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/lgi-onehealth/phcue-qc already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e08b80c0fb7667bdcd040761891701e576c42ec8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]      Locking 1 package to latest compatible version
[INFO] [stderr]       Adding phcue-qc v0.3.0 (/workspace/builds/worker-2-tc1/source)
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[ERROR] this task or one of its parent failed!
[ERROR] no output for 300 seconds
[ERROR] note: run with `RUST_BACKTRACE=1` to display a backtrace.
[INFO] checking lgi-onehealth/phcue-qc against try#f781a78d815e6a304bf6061b8a8fa69d7ce8dfd5 for pr-129021
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/lgi-onehealth/phcue-qc on toolchain f781a78d815e6a304bf6061b8a8fa69d7ce8dfd5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f781a78d815e6a304bf6061b8a8fa69d7ce8dfd5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/lgi-onehealth/phcue-qc
[INFO] finished tweaking git repo https://github.com/lgi-onehealth/phcue-qc
[INFO] tweaked toml for git repo https://github.com/lgi-onehealth/phcue-qc written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/lgi-onehealth/phcue-qc already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f781a78d815e6a304bf6061b8a8fa69d7ce8dfd5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]      Locking 1 package to latest compatible version
[INFO] [stderr]       Adding phcue-qc v0.3.0 (/workspace/builds/worker-2-tc2/source)
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded os_str_bytes v6.1.0
[INFO] [stderr]   Downloaded lz4 v1.23.3
[INFO] [stderr]   Downloaded clap_derive v3.2.7
[INFO] [stderr]   Downloaded miniz_oxide v0.5.3
[INFO] [stderr]   Downloaded serde_derive v1.0.139
[INFO] [stderr]   Downloaded hashbrown v0.12.2
[INFO] [stderr]   Downloaded num-format v0.4.0
[INFO] [stderr]   Downloaded dashmap v5.3.4
[INFO] [stderr]   Downloaded find_peaks v0.1.5
[INFO] [stderr]   Downloaded hdrhistogram v7.5.0
[INFO] [stderr]   Downloaded clap v3.2.10
[INFO] [stderr]   Downloaded lz4-sys v1.9.3
[INFO] [stderr]   Downloaded libz-sys v1.1.8
[INFO] [stderr]   Downloaded fastq v0.6.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+f781a78d815e6a304bf6061b8a8fa69d7ce8dfd5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3bc1168d6f1046ff4959c5dcad2169d01462cdfa63dbe2531ca029e3288b49a0
[INFO] running `Command { std: "docker" "start" "-a" "3bc1168d6f1046ff4959c5dcad2169d01462cdfa63dbe2531ca029e3288b49a0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3bc1168d6f1046ff4959c5dcad2169d01462cdfa63dbe2531ca029e3288b49a0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3bc1168d6f1046ff4959c5dcad2169d01462cdfa63dbe2531ca029e3288b49a0", kill_on_drop: false }`
[INFO] [stdout] 3bc1168d6f1046ff4959c5dcad2169d01462cdfa63dbe2531ca029e3288b49a0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+f781a78d815e6a304bf6061b8a8fa69d7ce8dfd5" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 950fc8163ee1d4e0a49365ee2612c7b3a93dae9ed212551a4572e1126a742430
[INFO] running `Command { std: "docker" "start" "-a" "950fc8163ee1d4e0a49365ee2612c7b3a93dae9ed212551a4572e1126a742430", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.40
[INFO] [stderr]    Compiling syn v1.0.98
[INFO] [stderr]    Compiling lz4-sys v1.9.3
[INFO] [stderr]    Compiling crossbeam-utils v0.8.10
[INFO] [stderr]    Compiling serde_derive v1.0.139
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]     Checking miniz_oxide v0.5.3
[INFO] [stderr]     Checking hashbrown v0.12.2
[INFO] [stderr]    Compiling serde v1.0.139
[INFO] [stderr]    Compiling arrayvec v0.4.12
[INFO] [stderr]     Checking os_str_bytes v6.1.0
[INFO] [stderr]    Compiling serde_json v1.0.82
[INFO] [stderr]     Checking nodrop v0.1.14
[INFO] [stderr]     Checking lock_api v0.4.7
[INFO] [stderr]     Checking parking_lot_core v0.9.3
[INFO] [stderr]     Checking nom v7.1.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking itoa v1.0.2
[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking ryu v1.0.10
[INFO] [stderr]     Checking find_peaks v0.1.5
[INFO] [stderr]     Checking flate2 v1.0.24
[INFO] [stderr]     Checking indexmap v1.9.1
[INFO] [stderr]     Checking dashmap v5.3.4
[INFO] [stderr]     Checking crossbeam-channel v0.5.5
[INFO] [stderr]     Checking num-format v0.4.0
[INFO] [stderr]    Compiling quote v1.0.20
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking hdrhistogram v7.5.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling clap_derive v3.2.7
[INFO] [stderr]     Checking clap v3.2.10
[INFO] [stderr]     Checking lz4 v1.23.3
[INFO] [stderr]     Checking fastq v0.6.0
[INFO] [stderr]     Checking phcue-qc v0.3.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `min_count`
[INFO] [stdout]   --> src/main.rs:96:61
[INFO] [stdout]    |
[INFO] [stdout] 96 |     fn get_depth_coverage(&mut self, hist: &Histogram<u64>, min_count: &u64) {
[INFO] [stdout]    |                                                             ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_count`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `min_count`
[INFO] [stdout]   --> src/main.rs:96:61
[INFO] [stdout]    |
[INFO] [stdout] 96 |     fn get_depth_coverage(&mut self, hist: &Histogram<u64>, min_count: &u64) {
[INFO] [stdout]    |                                                             ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_count`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 13.33s
[INFO] running `Command { std: "docker" "inspect" "950fc8163ee1d4e0a49365ee2612c7b3a93dae9ed212551a4572e1126a742430", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "950fc8163ee1d4e0a49365ee2612c7b3a93dae9ed212551a4572e1126a742430", kill_on_drop: false }`
[INFO] [stdout] 950fc8163ee1d4e0a49365ee2612c7b3a93dae9ed212551a4572e1126a742430