[INFO] cloning repository https://github.com/David-OConnor/plasmid_check [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/David-OConnor/plasmid_check" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDavid-OConnor%2Fplasmid_check", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDavid-OConnor%2Fplasmid_check'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 7c1ed397184857ff8e8684991ca4ad09beba1ff6 [INFO] checking David-OConnor/plasmid_check against master#83dcdb3a5dad0ed1e3e1fadc848d3f7727b41aa5 for pr-128425 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDavid-OConnor%2Fplasmid_check" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/David-OConnor/plasmid_check on toolchain 83dcdb3a5dad0ed1e3e1fadc848d3f7727b41aa5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+83dcdb3a5dad0ed1e3e1fadc848d3f7727b41aa5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/David-OConnor/plasmid_check [INFO] finished tweaking git repo https://github.com/David-OConnor/plasmid_check [INFO] tweaked toml for git repo https://github.com/David-OConnor/plasmid_check written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/David-OConnor/plasmid_check already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+83dcdb3a5dad0ed1e3e1fadc848d3f7727b41aa5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded circular v0.3.0 [INFO] [stderr] Downloaded xdg-home v1.2.0 [INFO] [stderr] Downloaded wayland-cursor v0.31.4 [INFO] [stderr] Downloaded egui-winit v0.28.1 [INFO] [stderr] Downloaded bit-vec v0.8.0 [INFO] [stderr] Downloaded bit-set v0.8.0 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded egui-wgpu v0.28.1 [INFO] [stderr] Downloaded wayland-client v0.31.4 [INFO] [stderr] Downloaded cc v1.1.0 [INFO] [stderr] Downloaded wayland-backend v0.3.5 [INFO] [stderr] Downloaded eframe v0.28.1 [INFO] [stderr] Downloaded statrs v0.17.1 [INFO] [stderr] Downloaded gb-io v0.7.1 [INFO] [stderr] Downloaded egui-file-dialog v0.6.0 [INFO] [stderr] Downloaded egui v0.28.1 [INFO] [stderr] Downloaded bio v2.0.1 [INFO] [stderr] Downloaded ttf-parser v0.24.0 [INFO] [stderr] Downloaded wayland-scanner v0.31.3 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded clipboard-win v5.4.0 [INFO] [stderr] Downloaded egui_glow v0.28.1 [INFO] [stderr] Downloaded emath v0.28.1 [INFO] [stderr] Downloaded egui_extras v0.28.1 [INFO] [stderr] Downloaded async-signal v0.2.8 [INFO] [stderr] Downloaded wayland-sys v0.31.3 [INFO] [stderr] Downloaded ecolor v0.28.1 [INFO] [stderr] Downloaded epaint v0.28.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+83dcdb3a5dad0ed1e3e1fadc848d3f7727b41aa5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 71b3d0760b40641526a3caf977605ad794bc349cb388ee53793a66449cd8f345 [INFO] running `Command { std: "docker" "start" "-a" "71b3d0760b40641526a3caf977605ad794bc349cb388ee53793a66449cd8f345", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "71b3d0760b40641526a3caf977605ad794bc349cb388ee53793a66449cd8f345", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "71b3d0760b40641526a3caf977605ad794bc349cb388ee53793a66449cd8f345", kill_on_drop: false }` [INFO] [stdout] 71b3d0760b40641526a3caf977605ad794bc349cb388ee53793a66449cd8f345 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+83dcdb3a5dad0ed1e3e1fadc848d3f7727b41aa5" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c8c5fd6249dae29f7caca84469a8ebd8109897d590cb6c5d2c4abee06fcc7e7c [INFO] running `Command { std: "docker" "start" "-a" "c8c5fd6249dae29f7caca84469a8ebd8109897d590cb6c5d2c4abee06fcc7e7c", kill_on_drop: false }` [INFO] [stderr] Compiling syn v2.0.70 [INFO] [stderr] Compiling serde v1.0.204 [INFO] [stderr] Checking smallvec v1.13.2 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Checking libloading v0.8.4 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Checking linux-raw-sys v0.4.14 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking dlib v0.5.2 [INFO] [stderr] Compiling wayland-sys v0.31.3 [INFO] [stderr] Compiling toml_datetime v0.6.6 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling cc v1.1.0 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking parking v2.2.0 [INFO] [stderr] Checking downcast-rs v1.2.1 [INFO] [stderr] Checking scoped-tls v1.0.1 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] 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[INFO] [stderr] Checking multimap v0.10.0 [INFO] [stderr] Checking atspi-proxies v0.3.0 [INFO] [stderr] Checking serde_bytes v0.11.15 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking ordered-float v4.2.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking sysinfo v0.30.13 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking circular v0.3.0 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking num_enum v0.7.3 [INFO] [stderr] Checking egui_extras v0.28.1 [INFO] [stderr] Checking egui-file-dialog v0.6.0 [INFO] [stderr] Checking bincode v2.0.0-rc.3 [INFO] [stderr] Checking quick-xml v0.36.1 [INFO] [stderr] Checking atspi-connection v0.3.0 [INFO] [stderr] Checking atspi v0.19.0 [INFO] [stderr] Checking accesskit_unix v0.6.2 [INFO] [stderr] Checking accesskit_winit v0.16.1 [INFO] [stderr] Checking egui-winit v0.28.1 [INFO] [stderr] Checking eframe v0.28.1 [INFO] [stderr] Checking statrs v0.17.1 [INFO] [stderr] Checking bio v2.0.1 [INFO] [stderr] Checking plascad v0.6.9 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `Feature` [INFO] [stdout] --> src/main.rs:20:39 [INFO] [stdout] | [INFO] [stdout] 20 | find_orf_matches, seq_to_str, Feature, FeatureDirection, FeatureType, ReadingFrame, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Reference` [INFO] [stdout] --> src/file_io/mod.rs:8:15 [INFO] [stdout] | [INFO] [stdout] 8 | Metadata, Reference, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `OpenOptions` [INFO] [stdout] --> src/file_io/save.rs:6:16 [INFO] [stdout] | [INFO] [stdout] 6 | fs::{File, OpenOptions}, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `PrimerData` and `Reference` [INFO] [stdout] --> src/file_io/save.rs:21:22 [INFO] [stdout] | [INFO] [stdout] 21 | primer::{Primer, PrimerData}, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] 22 | sequence::{Feature, Nucleotide, ReadingFrame, Seq, SeqTopology}, [INFO] [stdout] 23 | IonConcentrations, Metadata, Reference, State, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `str::FromStr` [INFO] [stdout] --> src/gui/mod.rs:1:26 [INFO] [stdout] | [INFO] [stdout] 1 | use std::{path::PathBuf, str::FromStr}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PrimerData` [INFO] [stdout] --> src/gui/circle.rs:19:22 [INFO] [stdout] | [INFO] [stdout] 19 | primer::{Primer, PrimerData, PrimerDirection}, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PrimerData` [INFO] [stdout] --> src/gui/primer_qc.rs:8:50 [INFO] [stdout] | [INFO] [stdout] 8 | primer::{make_amplification_primers, Primer, PrimerData, TuneSetting}, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `primer::PrimerDirection` [INFO] [stdout] --> src/restriction_enzyme.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | primer::PrimerDirection, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Feature` [INFO] [stdout] --> src/main.rs:20:39 [INFO] [stdout] | [INFO] [stdout] 20 | find_orf_matches, seq_to_str, Feature, FeatureDirection, FeatureType, ReadingFrame, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Reference` [INFO] [stdout] --> src/file_io/mod.rs:8:15 [INFO] [stdout] | [INFO] [stdout] 8 | Metadata, Reference, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `OpenOptions` [INFO] [stdout] --> src/file_io/save.rs:6:16 [INFO] [stdout] | [INFO] [stdout] 6 | fs::{File, OpenOptions}, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `PrimerData` and `Reference` [INFO] [stdout] --> src/file_io/save.rs:21:22 [INFO] [stdout] | [INFO] [stdout] 21 | primer::{Primer, PrimerData}, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] 22 | sequence::{Feature, Nucleotide, ReadingFrame, Seq, SeqTopology}, [INFO] [stdout] 23 | IonConcentrations, Metadata, Reference, State, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `str::FromStr` [INFO] [stdout] --> src/gui/mod.rs:1:26 [INFO] [stdout] | [INFO] [stdout] 1 | use std::{path::PathBuf, str::FromStr}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PrimerData` [INFO] [stdout] --> src/gui/circle.rs:19:22 [INFO] [stdout] | [INFO] [stdout] 19 | primer::{Primer, PrimerData, PrimerDirection}, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `PrimerData` [INFO] [stdout] --> src/gui/primer_qc.rs:8:50 [INFO] [stdout] | [INFO] [stdout] 8 | primer::{make_amplification_primers, Primer, PrimerData, TuneSetting}, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `primer::PrimerDirection` [INFO] [stdout] --> src/restriction_enzyme.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | primer::PrimerDirection, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Write` [INFO] [stdout] --> src/file_io/genbank.rs:10:27 [INFO] [stdout] | [INFO] [stdout] 10 | io::{self, ErrorKind, Write}, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Write` [INFO] [stdout] --> src/file_io/genbank.rs:10:27 [INFO] [stdout] | [INFO] [stdout] 10 | io::{self, ErrorKind, Write}, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/file_io/snapgene.rs:121:20 [INFO] [stdout] | [INFO] [stdout] 121 | Ok(v) => { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `v` [INFO] [stdout] --> src/file_io/snapgene.rs:121:20 [INFO] [stdout] | [INFO] [stdout] 121 | Ok(v) => { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_v` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/features.rs:23:16 [INFO] [stdout] | [INFO] [stdout] 23 | let (rect, response) = ui.allocate_exact_size(Vec2::new(60.0, 10.0), Sense::click()); [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/metadata.rs:119:13 [INFO] [stdout] | [INFO] [stdout] 119 | let response = ui.add( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/metadata.rs:82:17 [INFO] [stdout] | [INFO] [stdout] 82 | let response = ui.add( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/metadata.rs:92:17 [INFO] [stdout] | [INFO] [stdout] 92 | let response = ui.add( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `state` [INFO] [stdout] --> src/gui/portions.rs:7:22 [INFO] [stdout] | [INFO] [stdout] 7 | pub fn portions_page(state: &mut State, ui: &mut Ui) { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_state` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/features.rs:23:16 [INFO] [stdout] | [INFO] [stdout] 23 | let (rect, response) = ui.allocate_exact_size(Vec2::new(60.0, 10.0), Sense::click()); [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/metadata.rs:119:13 [INFO] [stdout] | [INFO] [stdout] 119 | let response = ui.add( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/metadata.rs:82:17 [INFO] [stdout] | [INFO] [stdout] 82 | let response = ui.add( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `response` [INFO] [stdout] --> src/gui/metadata.rs:92:17 [INFO] [stdout] | [INFO] [stdout] 92 | let response = ui.add( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_response` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `state` [INFO] [stdout] --> src/gui/portions.rs:7:22 [INFO] [stdout] | [INFO] [stdout] 7 | pub fn portions_page(state: &mut State, ui: &mut Ui) { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_state` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `note` [INFO] [stdout] --> src/gui/sequence.rs:114:17 [INFO] [stdout] | [INFO] [stdout] 114 | for note in &feature.notes { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_note` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ui` [INFO] [stdout] --> src/gui/sequence.rs:151:28 [INFO] [stdout] | [INFO] [stdout] 151 | ui.horizontal(|ui| { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_ui` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/gui/mod.rs:86:15 [INFO] [stdout] | [INFO] [stdout] 86 | fn open_blast(seq: &[Nucleotide]) { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `smallest_feature` is assigned to, but never used [INFO] [stdout] --> src/gui/mod.rs:143:17 [INFO] [stdout] | [INFO] [stdout] 143 | let mut smallest_feature = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_smallest_feature` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `smallest_feature` is never read [INFO] [stdout] --> src/gui/mod.rs:154:21 [INFO] [stdout] | [INFO] [stdout] 154 | smallest_feature = i; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `smallest_feature_size` is never read [INFO] [stdout] --> src/gui/mod.rs:155:21 [INFO] [stdout] | [INFO] [stdout] 155 | smallest_feature_size = feature_size; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `note` [INFO] [stdout] --> src/gui/sequence.rs:114:17 [INFO] [stdout] | [INFO] [stdout] 114 | for note in &feature.notes { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_note` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ui` [INFO] [stdout] --> src/gui/sequence.rs:151:28 [INFO] [stdout] | [INFO] [stdout] 151 | ui.horizontal(|ui| { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_ui` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/gui/mod.rs:86:15 [INFO] [stdout] | [INFO] [stdout] 86 | fn open_blast(seq: &[Nucleotide]) { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `smallest_feature` is assigned to, but never used [INFO] [stdout] --> src/gui/mod.rs:143:17 [INFO] [stdout] | [INFO] [stdout] 143 | let mut smallest_feature = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_smallest_feature` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `smallest_feature` is never read [INFO] [stdout] --> src/gui/mod.rs:154:21 [INFO] [stdout] | [INFO] [stdout] 154 | smallest_feature = i; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `smallest_feature_size` is never read [INFO] [stdout] --> src/gui/mod.rs:155:21 [INFO] [stdout] | [INFO] [stdout] 155 | smallest_feature_size = feature_size; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/sequence.rs:331:9 [INFO] [stdout] | [INFO] [stdout] 331 | let mut offset = orf.offset(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `data` [INFO] [stdout] --> src/main.rs:63:24 [INFO] [stdout] | [INFO] [stdout] 63 | fn check_seq_integrity(data: &PlasmidData) {} [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_data` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `data` [INFO] [stdout] --> src/main.rs:65:25 [INFO] [stdout] | [INFO] [stdout] 65 | fn check_toxic_proteins(data: &PlasmidData) {} [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_data` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `AminoAcid` is never used [INFO] [stdout] --> src/main.rs:42:6 [INFO] [stdout] | [INFO] [stdout] 42 | enum AminoAcid { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `PlasmidData` is never constructed [INFO] [stdout] --> src/main.rs:56:8 [INFO] [stdout] | [INFO] [stdout] 56 | struct PlasmidData { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_seq_integrity` is never used [INFO] [stdout] --> src/main.rs:63:4 [INFO] [stdout] | [INFO] [stdout] 63 | fn check_seq_integrity(data: &PlasmidData) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_toxic_proteins` is never used [INFO] [stdout] --> src/main.rs:65:4 [INFO] [stdout] | [INFO] [stdout] 65 | fn check_toxic_proteins(data: &PlasmidData) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_all` is never used [INFO] [stdout] --> src/main.rs:67:4 [INFO] [stdout] | [INFO] [stdout] 67 | fn check_all(data: &PlasmidData) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `direction` is never read [INFO] [stdout] --> src/main.rs:132:5 [INFO] [stdout] | [INFO] [stdout] 127 | struct StateFeatureAdd { [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 132 | direction: FeatureDirection, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `show_start_stop_codons` is never read [INFO] [stdout] --> src/main.rs:146:5 [INFO] [stdout] | [INFO] [stdout] 138 | struct SeqVisibility { [INFO] [stdout] | ------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 146 | show_start_stop_codons: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `feature_selected` is never read [INFO] [stdout] --> src/main.rs:271:5 [INFO] [stdout] | [INFO] [stdout] 259 | struct StateUi { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 271 | feature_selected: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `selected_item` is never read [INFO] [stdout] --> src/main.rs:372:5 [INFO] [stdout] | [INFO] [stdout] 358 | struct State { [INFO] [stdout] | ----- field in this struct [INFO] [stdout] ... [INFO] [stdout] 372 | selected_item: Selection, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `DEFAULT_FASTA_FILE` is never used [INFO] [stdout] --> src/file_io/save.rs:27:11 [INFO] [stdout] | [INFO] [stdout] 27 | pub const DEFAULT_FASTA_FILE: &str = "export.fasta"; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `DEFAULT_DNA_FILE` is never used [INFO] [stdout] --> src/file_io/save.rs:28:11 [INFO] [stdout] | [INFO] [stdout] 28 | pub const DEFAULT_DNA_FILE: &str = "export.dna"; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `LABEL_WIDTH` is never used [INFO] [stdout] --> src/gui/metadata.rs:7:7 [INFO] [stdout] | [INFO] [stdout] 7 | const LABEL_WIDTH: f32 = 140.; // Helps align the text edits, by forcing a fixed label width. [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `Portions` is never constructed [INFO] [stdout] --> src/gui/navigation.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 12 | pub enum Page { [INFO] [stdout] | ---- variant in this enum [INFO] [stdout] ... [INFO] [stdout] 22 | Portions, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Page` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `portions_page` is never used [INFO] [stdout] --> src/gui/portions.rs:7:8 [INFO] [stdout] | [INFO] [stdout] 7 | pub fn portions_page(state: &mut State, ui: &mut Ui) { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `MAX_SEQ_AREA_HEIGHT` is never used [INFO] [stdout] --> src/gui/seq_view.rs:39:7 [INFO] [stdout] | [INFO] [stdout] 39 | const MAX_SEQ_AREA_HEIGHT: u16 = 300; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `NucleotideGeneral` is never used [INFO] [stdout] --> src/restriction_enzyme.rs:19:10 [INFO] [stdout] | [INFO] [stdout] 19 | pub enum NucleotideGeneral { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `NucleotideGeneral` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `frame` is never read [INFO] [stdout] --> src/sequence.rs:108:9 [INFO] [stdout] | [INFO] [stdout] 107 | pub struct ReadingFrameMatch { [INFO] [stdout] | ----------------- field in this struct [INFO] [stdout] 108 | pub frame: ReadingFrame, [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `ReadingFrameMatch` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `AminoAcid` is never used [INFO] [stdout] --> src/toxic_proteins.rs:7:6 [INFO] [stdout] | [INFO] [stdout] 7 | enum AminoAcid { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Host` is never used [INFO] [stdout] --> src/toxic_proteins.rs:12:6 [INFO] [stdout] | [INFO] [stdout] 12 | enum Host { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `get_toxic_seqs` is never used [INFO] [stdout] --> src/toxic_proteins.rs:17:4 [INFO] [stdout] | [INFO] [stdout] 17 | fn get_toxic_seqs() -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/sequence.rs:331:9 [INFO] [stdout] | [INFO] [stdout] 331 | let mut offset = orf.offset(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `data` [INFO] [stdout] --> src/main.rs:63:24 [INFO] [stdout] | [INFO] [stdout] 63 | fn check_seq_integrity(data: &PlasmidData) {} [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_data` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `data` [INFO] [stdout] --> src/main.rs:65:25 [INFO] [stdout] | [INFO] [stdout] 65 | fn check_toxic_proteins(data: &PlasmidData) {} [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_data` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `AminoAcid` is never used [INFO] [stdout] --> src/main.rs:42:6 [INFO] [stdout] | [INFO] [stdout] 42 | enum AminoAcid { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `PlasmidData` is never constructed [INFO] [stdout] --> src/main.rs:56:8 [INFO] [stdout] | [INFO] [stdout] 56 | struct PlasmidData { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_seq_integrity` is never used [INFO] [stdout] --> src/main.rs:63:4 [INFO] [stdout] | [INFO] [stdout] 63 | fn check_seq_integrity(data: &PlasmidData) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_toxic_proteins` is never used [INFO] [stdout] --> src/main.rs:65:4 [INFO] [stdout] | [INFO] [stdout] 65 | fn check_toxic_proteins(data: &PlasmidData) {} [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_all` is never used [INFO] [stdout] --> src/main.rs:67:4 [INFO] [stdout] | [INFO] [stdout] 67 | fn check_all(data: &PlasmidData) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 44 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `direction` is never read [INFO] [stdout] --> src/main.rs:132:5 [INFO] [stdout] | [INFO] [stdout] 127 | struct StateFeatureAdd { [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 132 | direction: FeatureDirection, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `show_start_stop_codons` is never read [INFO] [stdout] --> src/main.rs:146:5 [INFO] [stdout] | [INFO] [stdout] 138 | struct SeqVisibility { [INFO] [stdout] | ------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 146 | show_start_stop_codons: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `feature_selected` is never read [INFO] [stdout] --> src/main.rs:271:5 [INFO] [stdout] | [INFO] [stdout] 259 | struct StateUi { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 271 | feature_selected: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `selected_item` is never read [INFO] [stdout] --> src/main.rs:372:5 [INFO] [stdout] | [INFO] [stdout] 358 | struct State { [INFO] [stdout] | ----- field in this struct [INFO] [stdout] ... [INFO] [stdout] 372 | selected_item: Selection, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `DEFAULT_FASTA_FILE` is never used [INFO] [stdout] --> src/file_io/save.rs:27:11 [INFO] [stdout] | [INFO] [stdout] 27 | pub const DEFAULT_FASTA_FILE: &str = "export.fasta"; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `DEFAULT_DNA_FILE` is never used [INFO] [stdout] --> src/file_io/save.rs:28:11 [INFO] [stdout] | [INFO] [stdout] 28 | pub const DEFAULT_DNA_FILE: &str = "export.dna"; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `LABEL_WIDTH` is never used [INFO] [stdout] --> src/gui/metadata.rs:7:7 [INFO] [stdout] | [INFO] [stdout] 7 | const LABEL_WIDTH: f32 = 140.; // Helps align the text edits, by forcing a fixed label width. [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `Portions` is never constructed [INFO] [stdout] --> src/gui/navigation.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 12 | pub enum Page { [INFO] [stdout] | ---- variant in this enum [INFO] [stdout] ... [INFO] [stdout] 22 | Portions, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Page` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `portions_page` is never used [INFO] [stdout] --> src/gui/portions.rs:7:8 [INFO] [stdout] | [INFO] [stdout] 7 | pub fn portions_page(state: &mut State, ui: &mut Ui) { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `MAX_SEQ_AREA_HEIGHT` is never used [INFO] [stdout] --> src/gui/seq_view.rs:39:7 [INFO] [stdout] | [INFO] [stdout] 39 | const MAX_SEQ_AREA_HEIGHT: u16 = 300; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `NucleotideGeneral` is never used [INFO] [stdout] --> src/restriction_enzyme.rs:19:10 [INFO] [stdout] | [INFO] [stdout] 19 | pub enum NucleotideGeneral { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `NucleotideGeneral` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `frame` is never read [INFO] [stdout] --> src/sequence.rs:108:9 [INFO] [stdout] | [INFO] [stdout] 107 | pub struct ReadingFrameMatch { [INFO] [stdout] | ----------------- field in this struct [INFO] [stdout] 108 | pub frame: ReadingFrame, [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `ReadingFrameMatch` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `AminoAcid` is never used [INFO] [stdout] --> src/toxic_proteins.rs:7:6 [INFO] [stdout] | [INFO] [stdout] 7 | enum AminoAcid { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `Host` is never used [INFO] [stdout] --> src/toxic_proteins.rs:12:6 [INFO] [stdout] | [INFO] [stdout] 12 | enum Host { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `get_toxic_seqs` is never used [INFO] [stdout] --> src/toxic_proteins.rs:17:4 [INFO] [stdout] | [INFO] [stdout] 17 | fn get_toxic_seqs() -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 44 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 48.63s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v4.2.3 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2` [INFO] running `Command { std: "docker" "inspect" "c8c5fd6249dae29f7caca84469a8ebd8109897d590cb6c5d2c4abee06fcc7e7c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c8c5fd6249dae29f7caca84469a8ebd8109897d590cb6c5d2c4abee06fcc7e7c", kill_on_drop: false }` [INFO] [stdout] c8c5fd6249dae29f7caca84469a8ebd8109897d590cb6c5d2c4abee06fcc7e7c