[INFO] fetching crate debruijn 0.3.4... [INFO] testing debruijn-0.3.4 against master#595316b4006932405a63862d8fe65f71a6356293 for pr-128254 [INFO] extracting crate debruijn 0.3.4 into /workspace/builds/worker-2-tc1/source [INFO] validating manifest of crates.io crate debruijn 0.3.4 on toolchain 595316b4006932405a63862d8fe65f71a6356293 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+595316b4006932405a63862d8fe65f71a6356293" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate debruijn 0.3.4 [INFO] finished tweaking crates.io crate debruijn 0.3.4 [INFO] tweaked toml for crates.io crate debruijn 0.3.4 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+595316b4006932405a63862d8fe65f71a6356293" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 40 packages to latest compatible versions [INFO] [stderr] Adding ansi_term v0.11.0 (latest: v0.12.1) [INFO] [stderr] Adding bit-set v0.5.3 (latest: v0.8.0) [INFO] [stderr] Adding bit-vec v0.6.3 (latest: v0.8.0) [INFO] [stderr] Adding bitflags v1.3.2 (latest: v2.6.0) [INFO] [stderr] Adding boomphf v0.5.9 (latest: v0.6.0) [INFO] [stderr] Adding cloudabi v0.0.3 (latest: v0.1.0) [INFO] [stderr] Adding pretty_assertions v0.5.1 (latest: v1.4.0) [INFO] [stderr] Adding rand v0.5.6 (latest: v0.8.5) [INFO] [stderr] Adding rand_core v0.3.1 (latest: v0.6.4) [INFO] [stderr] Adding rand_core v0.4.2 (latest: v0.6.4) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+595316b4006932405a63862d8fe65f71a6356293" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded boomphf v0.5.9 [INFO] [stderr] Downloaded wyhash v0.5.0 [INFO] [stderr] Downloaded pretty_assertions v0.5.1 [INFO] [stderr] Downloaded itertools v0.13.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+595316b4006932405a63862d8fe65f71a6356293" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c6cc3d0d7766b2f2942d0a2b7bf033556fa17b4fd70c16f9e62192f44635ebab [INFO] running `Command { std: "docker" "start" "-a" "c6cc3d0d7766b2f2942d0a2b7bf033556fa17b4fd70c16f9e62192f44635ebab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c6cc3d0d7766b2f2942d0a2b7bf033556fa17b4fd70c16f9e62192f44635ebab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c6cc3d0d7766b2f2942d0a2b7bf033556fa17b4fd70c16f9e62192f44635ebab", kill_on_drop: false }` [INFO] [stdout] c6cc3d0d7766b2f2942d0a2b7bf033556fa17b4fd70c16f9e62192f44635ebab [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+595316b4006932405a63862d8fe65f71a6356293" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d13222269aa1f43aca953fd27da809330cfb820b8c953f4617d2a8854ee71fc1 [INFO] running `Command { std: "docker" "start" "-a" "d13222269aa1f43aca953fd27da809330cfb820b8c953f4617d2a8854ee71fc1", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling wyhash v0.5.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling syn v2.0.72 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling serde_derive v1.0.204 [INFO] [stderr] Compiling serde v1.0.204 [INFO] [stderr] Compiling serde_json v1.0.122 [INFO] [stderr] Compiling boomphf v0.5.9 [INFO] [stderr] Compiling debruijn v0.3.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated method `itertools::Itertools::group_by`: Use .chunk_by() instead [INFO] [stdout] --> src/filter.rs:214:64 [INFO] [stdout] | [INFO] [stdout] 214 | for (kmer, kmer_obs_iter) in &kmer_vec.into_iter().group_by(|elt| elt.0) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:19:20 [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `ExtMode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:25:24 [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `ExtModeNode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 13.77s [INFO] running `Command { std: "docker" "inspect" "d13222269aa1f43aca953fd27da809330cfb820b8c953f4617d2a8854ee71fc1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d13222269aa1f43aca953fd27da809330cfb820b8c953f4617d2a8854ee71fc1", kill_on_drop: false }` [INFO] [stdout] d13222269aa1f43aca953fd27da809330cfb820b8c953f4617d2a8854ee71fc1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+595316b4006932405a63862d8fe65f71a6356293" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e1ee225cf3821be856a63a1a18026e3fb1858ebf7cce5a71de0269170e94ae0d [INFO] running `Command { std: "docker" "start" "-a" "e1ee225cf3821be856a63a1a18026e3fb1858ebf7cce5a71de0269170e94ae0d", kill_on_drop: false }` [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stdout] warning: use of deprecated method `itertools::Itertools::group_by`: Use .chunk_by() instead [INFO] [stdout] --> src/filter.rs:214:64 [INFO] [stdout] | [INFO] [stdout] 214 | for (kmer, kmer_obs_iter) in &kmer_vec.into_iter().group_by(|elt| elt.0) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:19:20 [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `ExtMode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:25:24 [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `ExtModeNode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling pretty_assertions v0.5.1 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling debruijn v0.3.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:394:33 [INFO] [stdout] | [INFO] [stdout] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:586:25 [INFO] [stdout] | [INFO] [stdout] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:587:25 [INFO] [stdout] | [INFO] [stdout] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `itertools::Itertools::group_by`: Use .chunk_by() instead [INFO] [stdout] --> src/filter.rs:214:64 [INFO] [stdout] | [INFO] [stdout] 214 | for (kmer, kmer_obs_iter) in &kmer_vec.into_iter().group_by(|elt| elt.0) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:19:20 [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `ExtMode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:25:24 [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `ExtModeNode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 8.31s [INFO] running `Command { std: "docker" "inspect" "e1ee225cf3821be856a63a1a18026e3fb1858ebf7cce5a71de0269170e94ae0d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e1ee225cf3821be856a63a1a18026e3fb1858ebf7cce5a71de0269170e94ae0d", kill_on_drop: false }` [INFO] [stdout] e1ee225cf3821be856a63a1a18026e3fb1858ebf7cce5a71de0269170e94ae0d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+595316b4006932405a63862d8fe65f71a6356293" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 3620d6710ec74255c91479d0691697fb6136696b51ef25ff763af042860f7ee4 [INFO] running `Command { std: "docker" "start" "-a" "3620d6710ec74255c91479d0691697fb6136696b51ef25ff763af042860f7ee4", kill_on_drop: false }` [INFO] [stderr] warning: use of deprecated method `itertools::Itertools::group_by`: Use .chunk_by() instead [INFO] [stderr] --> src/filter.rs:214:64 [INFO] [stderr] | [INFO] [stderr] 214 | for (kmer, kmer_obs_iter) in &kmer_vec.into_iter().group_by(|elt| elt.0) { [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: field `2` is never read [INFO] [stderr] --> src/compression.rs:19:20 [INFO] [stderr] | [INFO] [stderr] 19 | Unique(K, Dir, Exts), [INFO] [stderr] | ------ ^^^^ [INFO] [stderr] | | [INFO] [stderr] | field in this variant [INFO] [stderr] | [INFO] [stderr] = note: `ExtMode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stderr] | [INFO] [stderr] 19 | Unique(K, Dir, ()), [INFO] [stderr] | ~~ [INFO] [stderr] [INFO] [stderr] warning: field `2` is never read [INFO] [stderr] --> src/compression.rs:25:24 [INFO] [stderr] | [INFO] [stderr] 25 | Unique(usize, Dir, Exts), [INFO] [stderr] | ------ ^^^^ [INFO] [stderr] | | [INFO] [stderr] | field in this variant [INFO] [stderr] | [INFO] [stderr] = note: `ExtModeNode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stderr] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stderr] | [INFO] [stderr] 25 | Unique(usize, Dir, ()), [INFO] [stderr] | ~~ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:394:33 [INFO] [stderr] | [INFO] [stderr] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:586:25 [INFO] [stderr] | [INFO] [stderr] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:587:25 [INFO] [stderr] | [INFO] [stderr] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated method `itertools::Itertools::group_by`: Use .chunk_by() instead [INFO] [stderr] --> src/filter.rs:214:64 [INFO] [stderr] | [INFO] [stderr] 214 | for (kmer, kmer_obs_iter) in &kmer_vec.into_iter().group_by(|elt| elt.0) { [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `debruijn` (lib) generated 3 warnings [INFO] [stderr] warning: `debruijn` (lib test) generated 6 warnings (2 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.06s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/debruijn-1da10368f6bff091) [INFO] [stdout] [INFO] [stdout] running 52 tests [INFO] [stdout] test dna_string::tests::test_suffix ... ok [INFO] [stdout] test dna_string::tests::test_push_bytes ... ok [INFO] [stdout] test dna_string::tests::test_ndiffs ... ok [INFO] [stdout] test dna_string::tests::test_kmers_too_short ... ok [INFO] [stdout] test dna_string::tests::dnastringslice_get_kmer ... ok [INFO] [stdout] test dna_string::tests::test_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_kmers ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_for_debug ... ok [INFO] [stdout] test dna_string::tests::test_from_dna_string ... ok [INFO] [stdout] test dna_string::tests::dnastringslice_slice ... ok [INFO] [stdout] test dna_string::tests::test_prefix ... ok [INFO] [stdout] test dna_string::tests::test_reverse ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_random ... ok [INFO] [stdout] test bitops_avx2::test::test_invalid_bases ... ok [INFO] [stdout] test kmer::tests::test_kmer_6 ... ok [INFO] [stdout] test kmer::tests::test_kmer_4 ... ok [INFO] [stdout] test kmer::tests::test_kmer_5 ... ok [INFO] [stdout] test kmer::tests::test_kmer_10 ... ok [INFO] [stdout] test kmer::tests::test_kmer_12 ... ok [INFO] [stdout] test kmer::tests::test_kmer_14 ... ok [INFO] [stdout] test kmer::tests::test_kmer_8 ... ok [INFO] [stdout] test kmer::tests::test_kmer_16 ... ok [INFO] [stdout] test msp::tests::test1 ... ok [INFO] [stdout] test kmer::tests::test_kmer_15 ... ok [INFO] [stdout] test msp::tests::test_sample ... ok [INFO] [stdout] test kmer::tests::test_kmer_20 ... ok [INFO] [stdout] test neighbors::test::test_hd1 ... ok [INFO] [stdout] test msp::tests::test_slice ... ok [INFO] [stdout] test kmer::tests::test_kmer_24 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_16 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_20 ... ok [INFO] [stdout] test test::tests::degen_seq_asm ... ok [INFO] [stdout] test test::tests::degen_seq_asm_sharded ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_24 ... ok [INFO] [stdout] test kmer::tests::test_kmer_31 ... ok [INFO] [stdout] test test::tests::simple_kmer_compress ... ok [INFO] [stdout] test test::tests::simple_sharded ... ok [INFO] [stdout] test test::tests::simple_tip_clean ... ok [INFO] [stdout] test test::tests::simple_path_compress ... ok [INFO] [stdout] test kmer::tests::test_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_kmer_48 ... ok [INFO] [stdout] test kmer::tests::test_kmer_64 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_2_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_48 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_64 ... ok [INFO] [stdout] test dna_string::tests::test_slice_hamming_dist ... ok [INFO] [stdout] test test::tests::complex_path_compress ... ok [INFO] [stdout] test test::tests::complex_kmer_compress ... ok [INFO] [stdout] test test::tests::complex_sharded ... ok [INFO] [stdout] test test::tests::complex_path_compress_k31 ... ok [INFO] [stdout] test msp::tests::test_msp_scanner has been running for over 60 seconds [ERROR] error running command: no output for 300 seconds [INFO] running `Command { std: "docker" "inspect" "3620d6710ec74255c91479d0691697fb6136696b51ef25ff763af042860f7ee4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3620d6710ec74255c91479d0691697fb6136696b51ef25ff763af042860f7ee4", kill_on_drop: false }` [INFO] [stdout] 3620d6710ec74255c91479d0691697fb6136696b51ef25ff763af042860f7ee4 [INFO] testing debruijn-0.3.4 against try#5e89635d7bf1d3033c2eb20378b7b3cbe2dd1a9b for pr-128254 [INFO] extracting crate debruijn 0.3.4 into /workspace/builds/worker-2-tc2/source [INFO] validating manifest of crates.io crate debruijn 0.3.4 on toolchain 5e89635d7bf1d3033c2eb20378b7b3cbe2dd1a9b [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5e89635d7bf1d3033c2eb20378b7b3cbe2dd1a9b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate debruijn 0.3.4 [INFO] finished tweaking crates.io crate debruijn 0.3.4 [INFO] tweaked toml for crates.io crate debruijn 0.3.4 written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5e89635d7bf1d3033c2eb20378b7b3cbe2dd1a9b" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 40 packages to latest compatible versions [INFO] [stderr] Adding ansi_term v0.11.0 (latest: v0.12.1) [INFO] [stderr] Adding bit-set v0.5.3 (latest: v0.8.0) [INFO] [stderr] Adding bit-vec v0.6.3 (latest: v0.8.0) [INFO] [stderr] Adding bitflags v1.3.2 (latest: v2.6.0) [INFO] [stderr] Adding boomphf v0.5.9 (latest: v0.6.0) [INFO] [stderr] Adding cloudabi v0.0.3 (latest: v0.1.0) [INFO] [stderr] Adding pretty_assertions v0.5.1 (latest: v1.4.0) [INFO] [stderr] Adding rand v0.5.6 (latest: v0.8.5) [INFO] [stderr] Adding rand_core v0.3.1 (latest: v0.6.4) [INFO] [stderr] Adding rand_core v0.4.2 (latest: v0.6.4) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5e89635d7bf1d3033c2eb20378b7b3cbe2dd1a9b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+5e89635d7bf1d3033c2eb20378b7b3cbe2dd1a9b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c81275b232122719dd05ebaa8fc485125b54e0525b788c82e822baadaa5bcfd6 [INFO] running `Command { std: "docker" "start" "-a" "c81275b232122719dd05ebaa8fc485125b54e0525b788c82e822baadaa5bcfd6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c81275b232122719dd05ebaa8fc485125b54e0525b788c82e822baadaa5bcfd6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c81275b232122719dd05ebaa8fc485125b54e0525b788c82e822baadaa5bcfd6", kill_on_drop: false }` [INFO] [stdout] c81275b232122719dd05ebaa8fc485125b54e0525b788c82e822baadaa5bcfd6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+5e89635d7bf1d3033c2eb20378b7b3cbe2dd1a9b" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] bd132995437504b15a2fee946f12d31cf2d5b2216c7e7e731eb1dde98ae301b0 [INFO] running `Command { std: "docker" "start" "-a" "bd132995437504b15a2fee946f12d31cf2d5b2216c7e7e731eb1dde98ae301b0", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling wyhash v0.5.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling syn v2.0.72 [INFO] [stderr] Compiling serde_derive v1.0.204 [INFO] [stderr] Compiling serde v1.0.204 [INFO] [stderr] Compiling serde_json v1.0.122 [INFO] [stderr] Compiling boomphf v0.5.9 [INFO] [stderr] Compiling debruijn v0.3.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated method `itertools::Itertools::group_by`: Use .chunk_by() instead [INFO] [stdout] --> src/filter.rs:214:64 [INFO] [stdout] | [INFO] [stdout] 214 | for (kmer, kmer_obs_iter) in &kmer_vec.into_iter().group_by(|elt| elt.0) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:19:20 [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `ExtMode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:25:24 [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `ExtModeNode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 7.52s [INFO] running `Command { std: "docker" "inspect" "bd132995437504b15a2fee946f12d31cf2d5b2216c7e7e731eb1dde98ae301b0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bd132995437504b15a2fee946f12d31cf2d5b2216c7e7e731eb1dde98ae301b0", kill_on_drop: false }` [INFO] [stdout] bd132995437504b15a2fee946f12d31cf2d5b2216c7e7e731eb1dde98ae301b0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+5e89635d7bf1d3033c2eb20378b7b3cbe2dd1a9b" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9ddf0c0ccc8e2fc8e19adbbedc205a0deae586156bd3198a2e55c04ac6481ba5 [INFO] running `Command { std: "docker" "start" "-a" "9ddf0c0ccc8e2fc8e19adbbedc205a0deae586156bd3198a2e55c04ac6481ba5", kill_on_drop: false }` [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stdout] warning: use of deprecated method `itertools::Itertools::group_by`: Use .chunk_by() instead [INFO] [stdout] --> src/filter.rs:214:64 [INFO] [stdout] | [INFO] [stdout] 214 | for (kmer, kmer_obs_iter) in &kmer_vec.into_iter().group_by(|elt| elt.0) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:19:20 [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `ExtMode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:25:24 [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `ExtModeNode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling pretty_assertions v0.5.1 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling debruijn v0.3.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:394:33 [INFO] [stdout] | [INFO] [stdout] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:586:25 [INFO] [stdout] | [INFO] [stdout] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:587:25 [INFO] [stdout] | [INFO] [stdout] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `itertools::Itertools::group_by`: Use .chunk_by() instead [INFO] [stdout] --> src/filter.rs:214:64 [INFO] [stdout] | [INFO] [stdout] 214 | for (kmer, kmer_obs_iter) in &kmer_vec.into_iter().group_by(|elt| elt.0) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:19:20 [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `ExtMode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:25:24 [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `ExtModeNode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.78s [INFO] running `Command { std: "docker" "inspect" "9ddf0c0ccc8e2fc8e19adbbedc205a0deae586156bd3198a2e55c04ac6481ba5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9ddf0c0ccc8e2fc8e19adbbedc205a0deae586156bd3198a2e55c04ac6481ba5", kill_on_drop: false }` [INFO] [stdout] 9ddf0c0ccc8e2fc8e19adbbedc205a0deae586156bd3198a2e55c04ac6481ba5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+5e89635d7bf1d3033c2eb20378b7b3cbe2dd1a9b" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] cd382e727df2567d9613f97277c05d960f33aba6a06b25fd864a8bd445d68bad [INFO] running `Command { std: "docker" "start" "-a" "cd382e727df2567d9613f97277c05d960f33aba6a06b25fd864a8bd445d68bad", kill_on_drop: false }` [INFO] [stderr] warning: use of deprecated method `itertools::Itertools::group_by`: Use .chunk_by() instead [INFO] [stderr] --> src/filter.rs:214:64 [INFO] [stderr] | [INFO] [stderr] 214 | for (kmer, kmer_obs_iter) in &kmer_vec.into_iter().group_by(|elt| elt.0) { [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: field `2` is never read [INFO] [stderr] --> src/compression.rs:19:20 [INFO] [stderr] | [INFO] [stderr] 19 | Unique(K, Dir, Exts), [INFO] [stderr] | ------ ^^^^ [INFO] [stderr] | | [INFO] [stderr] | field in this variant [INFO] [stderr] | [INFO] [stderr] = note: `ExtMode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stderr] | [INFO] [stderr] 19 | Unique(K, Dir, ()), [INFO] [stderr] | ~~ [INFO] [stderr] [INFO] [stderr] warning: field `2` is never read [INFO] [stderr] --> src/compression.rs:25:24 [INFO] [stderr] | [INFO] [stderr] 25 | Unique(usize, Dir, Exts), [INFO] [stderr] | ------ ^^^^ [INFO] [stderr] | | [INFO] [stderr] | field in this variant [INFO] [stderr] | [INFO] [stderr] = note: `ExtModeNode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stderr] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stderr] | [INFO] [stderr] 25 | Unique(usize, Dir, ()), [INFO] [stderr] | ~~ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:394:33 [INFO] [stderr] | [INFO] [stderr] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:586:25 [INFO] [stderr] | [INFO] [stderr] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:587:25 [INFO] [stderr] | [INFO] [stderr] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated method `itertools::Itertools::group_by`: Use .chunk_by() instead [INFO] [stderr] --> src/filter.rs:214:64 [INFO] [stderr] | [INFO] [stderr] 214 | for (kmer, kmer_obs_iter) in &kmer_vec.into_iter().group_by(|elt| elt.0) { [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `debruijn` (lib) generated 3 warnings [INFO] [stderr] warning: `debruijn` (lib test) generated 6 warnings (2 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/debruijn-1da10368f6bff091) [INFO] [stdout] [INFO] [stdout] running 52 tests [INFO] [stdout] test dna_string::tests::dnastringslice_slice ... ok [INFO] [stdout] test dna_string::tests::dnastringslice_get_kmer ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_for_debug ... ok [INFO] [stdout] test dna_string::tests::test_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_from_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_kmers_too_short ... ok [INFO] [stdout] test dna_string::tests::test_ndiffs ... ok [INFO] [stdout] test dna_string::tests::test_prefix ... ok [INFO] [stdout] test dna_string::tests::test_push_bytes ... ok [INFO] [stdout] test dna_string::tests::test_kmers ... ok [INFO] [stdout] test dna_string::tests::test_reverse ... ok [INFO] [stdout] test dna_string::tests::test_suffix ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_random ... ok [INFO] [stdout] test bitops_avx2::test::test_invalid_bases ... ok [INFO] [stdout] test kmer::tests::test_kmer_4 ... ok [INFO] [stdout] test kmer::tests::test_kmer_6 ... ok [INFO] [stdout] test kmer::tests::test_kmer_10 ... ok [INFO] [stdout] test kmer::tests::test_kmer_5 ... ok [INFO] [stdout] test kmer::tests::test_kmer_16 ... ok [INFO] [stdout] test kmer::tests::test_kmer_8 ... ok [INFO] [stdout] test kmer::tests::test_kmer_12 ... ok [INFO] [stdout] test kmer::tests::test_kmer_15 ... ok [INFO] [stdout] test msp::tests::test1 ... ok [INFO] [stdout] test kmer::tests::test_kmer_20 ... ok [INFO] [stdout] test msp::tests::test_sample ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_20 ... ok [INFO] [stdout] test neighbors::test::test_hd1 ... ok [INFO] [stdout] test kmer::tests::test_kmer_14 ... ok [INFO] [stdout] test kmer::tests::test_kmer_24 ... ok [INFO] [stdout] test msp::tests::test_slice ... ok [INFO] [stdout] test kmer::tests::test_kmer_32 ... ok [INFO] [stdout] test test::tests::degen_seq_asm ... ok [INFO] [stdout] test test::tests::degen_seq_asm_sharded ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_24 ... ok [INFO] [stdout] test test::tests::simple_kmer_compress ... ok [INFO] [stdout] test kmer::tests::test_kmer_31 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_16 ... ok [INFO] [stdout] test test::tests::simple_sharded ... ok [INFO] [stdout] test test::tests::simple_path_compress ... ok [INFO] [stdout] test test::tests::simple_tip_clean ... ok [INFO] [stdout] test kmer::tests::test_kmer_48 ... ok [INFO] [stdout] test kmer::tests::test_kmer_64 ... ok [INFO] [stdout] test kmer::tests::test_lmer_2_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_48 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_64 ... ok [INFO] [stdout] test dna_string::tests::test_slice_hamming_dist ... ok [INFO] [stdout] test test::tests::complex_path_compress ... ok [INFO] [stdout] test test::tests::complex_sharded ... ok [INFO] [stdout] test test::tests::complex_kmer_compress ... ok [INFO] [stdout] test test::tests::complex_path_compress_k31 ... ok [INFO] [stdout] test msp::tests::test_msp_scanner has been running for over 60 seconds [INFO] [stdout] test msp::tests::test_msp_scanner ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 52 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 327.73s [INFO] [stdout] [INFO] [stderr] Doc-tests debruijn [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test src/kmer.rs - kmer (line 10) ... ok [INFO] [stdout] test src/dna_string.rs - dna_string (line 12) ... ok [INFO] [stdout] test src/dna_string.rs - dna_string::DnaString (line 51) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.19s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "cd382e727df2567d9613f97277c05d960f33aba6a06b25fd864a8bd445d68bad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cd382e727df2567d9613f97277c05d960f33aba6a06b25fd864a8bd445d68bad", kill_on_drop: false }` [INFO] [stdout] cd382e727df2567d9613f97277c05d960f33aba6a06b25fd864a8bd445d68bad