[INFO] cloning repository https://github.com/HopedWall/GFAtoVCF [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/HopedWall/GFAtoVCF" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8960fd42cada8e94d81c8391405e0df59045a60a [INFO] checking HopedWall/GFAtoVCF against master#2e6fc425411280c658d852813de01c5157255088 for pr-128013 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/HopedWall/GFAtoVCF on toolchain 2e6fc425411280c658d852813de01c5157255088 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/HopedWall/GFAtoVCF [INFO] finished tweaking git repo https://github.com/HopedWall/GFAtoVCF [INFO] tweaked toml for git repo https://github.com/HopedWall/GFAtoVCF written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/HopedWall/GFAtoVCF already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded priority-queue v1.2.1 [INFO] [stderr] Downloaded gfa v0.2.3 [INFO] [stderr] Downloaded handlegraph v0.2.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 42a8d027d57e529b0accef4873e1989f380dcedae9d46dd1021184e11f3b17e4 [INFO] running `Command { std: "docker" "start" "-a" "42a8d027d57e529b0accef4873e1989f380dcedae9d46dd1021184e11f3b17e4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "42a8d027d57e529b0accef4873e1989f380dcedae9d46dd1021184e11f3b17e4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "42a8d027d57e529b0accef4873e1989f380dcedae9d46dd1021184e11f3b17e4", kill_on_drop: false }` [INFO] [stdout] 42a8d027d57e529b0accef4873e1989f380dcedae9d46dd1021184e11f3b17e4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6fc9f8b924dee7bbaaa8ace07b6c143e6535c45ee136201b42bb054cd9ab2bea [INFO] running `Command { std: "docker" "start" "-a" "6fc9f8b924dee7bbaaa8ace07b6c143e6535c45ee136201b42bb054cd9ab2bea", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling libc v0.2.112 [INFO] [stderr] Compiling lexical-core v0.7.6 [INFO] [stderr] Checking regex-syntax v0.6.25 [INFO] [stderr] Checking ryu v1.0.9 [INFO] [stderr] Checking arrayvec v0.5.2 [INFO] [stderr] Checking hashbrown v0.11.2 [INFO] [stderr] Checking unicode-width v0.1.9 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Checking ansi_term v0.12.1 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Checking json v0.12.4 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling indexmap v1.8.0 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling priority-queue v1.2.1 [INFO] [stderr] Checking aho-corasick v0.7.18 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking time v0.1.44 [INFO] [stderr] Checking clap v2.34.0 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking chrono v0.4.19 [INFO] [stderr] Checking regex v1.5.4 [INFO] [stderr] Checking gfa v0.2.3 [INFO] [stderr] Checking handlegraph v0.2.0 [INFO] [stderr] Checking gfa_to_vcf v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3.06s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v5.1.2 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "6fc9f8b924dee7bbaaa8ace07b6c143e6535c45ee136201b42bb054cd9ab2bea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6fc9f8b924dee7bbaaa8ace07b6c143e6535c45ee136201b42bb054cd9ab2bea", kill_on_drop: false }` [INFO] [stdout] 6fc9f8b924dee7bbaaa8ace07b6c143e6535c45ee136201b42bb054cd9ab2bea [INFO] checking HopedWall/GFAtoVCF against try#d856f2da3433420b7077c0dc7ee9441455bc1302 for pr-128013 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/HopedWall/GFAtoVCF on toolchain d856f2da3433420b7077c0dc7ee9441455bc1302 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d856f2da3433420b7077c0dc7ee9441455bc1302" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/HopedWall/GFAtoVCF [INFO] finished tweaking git repo https://github.com/HopedWall/GFAtoVCF [INFO] tweaked toml for git repo https://github.com/HopedWall/GFAtoVCF written to /workspace/builds/worker-0-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/HopedWall/GFAtoVCF already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d856f2da3433420b7077c0dc7ee9441455bc1302" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+d856f2da3433420b7077c0dc7ee9441455bc1302" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5efd0731895d4b71b75eaeee5272a2e2d3daacc061bf436bfbf977c8a2d5ea89 [INFO] running `Command { std: "docker" "start" "-a" "5efd0731895d4b71b75eaeee5272a2e2d3daacc061bf436bfbf977c8a2d5ea89", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5efd0731895d4b71b75eaeee5272a2e2d3daacc061bf436bfbf977c8a2d5ea89", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5efd0731895d4b71b75eaeee5272a2e2d3daacc061bf436bfbf977c8a2d5ea89", kill_on_drop: false }` [INFO] [stdout] 5efd0731895d4b71b75eaeee5272a2e2d3daacc061bf436bfbf977c8a2d5ea89 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+d856f2da3433420b7077c0dc7ee9441455bc1302" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 70d259520477a178121802ba895283076293db682b963103870f11f7c6898b4e [INFO] running `Command { std: "docker" "start" "-a" "70d259520477a178121802ba895283076293db682b963103870f11f7c6898b4e", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling libc v0.2.112 [INFO] [stderr] Compiling lexical-core v0.7.6 [INFO] [stderr] Checking arrayvec v0.5.2 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Checking regex-syntax v0.6.25 [INFO] [stderr] Checking ryu v1.0.9 [INFO] [stderr] Checking hashbrown v0.11.2 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Checking unicode-width v0.1.9 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Checking ansi_term v0.12.1 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking json v0.12.4 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling indexmap v1.8.0 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling priority-queue v1.2.1 [INFO] [stderr] Checking aho-corasick v0.7.18 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking time v0.1.44 [INFO] [stderr] Checking clap v2.34.0 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stdout] error[E0034]: multiple applicable items in scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/num-integer-0.1.44/src/lib.rs:482:41 [INFO] [stdout] | [INFO] [stdout] 482 | return (1 << shift).abs(); [INFO] [stdout] | ^^^ multiple `abs` found [INFO] [stdout] ... [INFO] [stdout] 791 | impl_integer_for_isize!(i8, test_integer_i8); [INFO] [stdout] | -------------------------------------------- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: candidate #1 is defined in an impl for the type `i128` [INFO] [stdout] = note: candidate #2 is defined in an impl for the type `i16` [INFO] [stdout] = note: candidate #3 is defined in an impl for the type `i32` [INFO] [stdout] = note: candidate #4 is defined in an impl for the type `i64` [INFO] [stdout] = note: and 2 others [INFO] [stdout] = note: this error originates in the macro `impl_integer_for_isize` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0034]: multiple applicable items in scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/num-integer-0.1.44/src/lib.rs:482:41 [INFO] [stdout] | [INFO] [stdout] 482 | return (1 << shift).abs(); [INFO] [stdout] | ^^^ multiple `abs` found [INFO] [stdout] ... [INFO] [stdout] 792 | impl_integer_for_isize!(i16, test_integer_i16); [INFO] [stdout] | ---------------------------------------------- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: candidate #1 is defined in an impl for the type `i128` [INFO] [stdout] = note: candidate #2 is defined in an impl for the type `i16` [INFO] [stdout] = note: candidate #3 is defined in an impl for the type `i32` [INFO] [stdout] = note: candidate #4 is defined in an impl for the type `i64` [INFO] [stdout] = note: and 2 others [INFO] [stdout] = note: this error originates in the macro `impl_integer_for_isize` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0034]: multiple applicable items in scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/num-integer-0.1.44/src/lib.rs:482:41 [INFO] [stdout] | [INFO] [stdout] 482 | return (1 << shift).abs(); [INFO] [stdout] | ^^^ multiple `abs` found [INFO] [stdout] ... [INFO] [stdout] 793 | impl_integer_for_isize!(i32, test_integer_i32); [INFO] [stdout] | ---------------------------------------------- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: candidate #1 is defined in an impl for the type `i128` [INFO] [stdout] = note: candidate #2 is defined in an impl for the type `i16` [INFO] [stdout] = note: candidate #3 is defined in an impl for the type `i32` [INFO] [stdout] = note: candidate #4 is defined in an impl for the type `i64` [INFO] [stdout] = note: and 2 others [INFO] [stdout] = note: this error originates in the macro `impl_integer_for_isize` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0034]: multiple applicable items in scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/num-integer-0.1.44/src/lib.rs:482:41 [INFO] [stdout] | [INFO] [stdout] 482 | return (1 << shift).abs(); [INFO] [stdout] | ^^^ multiple `abs` found [INFO] [stdout] ... [INFO] [stdout] 794 | impl_integer_for_isize!(i64, test_integer_i64); [INFO] [stdout] | ---------------------------------------------- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: candidate #1 is defined in an impl for the type `i128` [INFO] [stdout] = note: candidate #2 is defined in an impl for the type `i16` [INFO] [stdout] = note: candidate #3 is defined in an impl for the type `i32` [INFO] [stdout] = note: candidate #4 is defined in an impl for the type `i64` [INFO] [stdout] = note: and 2 others [INFO] [stdout] = note: this error originates in the macro `impl_integer_for_isize` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0034]: multiple applicable items in scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/num-integer-0.1.44/src/lib.rs:482:41 [INFO] [stdout] | [INFO] [stdout] 482 | return (1 << shift).abs(); [INFO] [stdout] | ^^^ multiple `abs` found [INFO] [stdout] ... [INFO] [stdout] 795 | impl_integer_for_isize!(isize, test_integer_isize); [INFO] [stdout] | -------------------------------------------------- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: candidate #1 is defined in an impl for the type `i128` [INFO] [stdout] = note: candidate #2 is defined in an impl for the type `i16` [INFO] [stdout] = note: candidate #3 is defined in an impl for the type `i32` [INFO] [stdout] = note: candidate #4 is defined in an impl for the type `i64` [INFO] [stdout] = note: and 2 others [INFO] [stdout] = note: this error originates in the macro `impl_integer_for_isize` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0034]: multiple applicable items in scope [INFO] [stdout] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/num-integer-0.1.44/src/lib.rs:482:41 [INFO] [stdout] | [INFO] [stdout] 482 | return (1 << shift).abs(); [INFO] [stdout] | ^^^ multiple `abs` found [INFO] [stdout] ... [INFO] [stdout] 797 | impl_integer_for_isize!(i128, test_integer_i128); [INFO] [stdout] | ------------------------------------------------ in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: candidate #1 is defined in an impl for the type `i128` [INFO] [stdout] = note: candidate #2 is defined in an impl for the type `i16` [INFO] [stdout] = note: candidate #3 is defined in an impl for the type `i32` [INFO] [stdout] = note: candidate #4 is defined in an impl for the type `i64` [INFO] [stdout] = note: and 2 others [INFO] [stdout] = note: this error originates in the macro `impl_integer_for_isize` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 6 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0034`. [INFO] [stdout] [INFO] [stderr] error: could not compile `num-integer` (lib) due to 7 previous errors [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "70d259520477a178121802ba895283076293db682b963103870f11f7c6898b4e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "70d259520477a178121802ba895283076293db682b963103870f11f7c6898b4e", kill_on_drop: false }` [INFO] [stdout] 70d259520477a178121802ba895283076293db682b963103870f11f7c6898b4e