[INFO] fetching crate exon-bam 0.21.0... [INFO] checking exon-bam-0.21.0 against master#2e6fc425411280c658d852813de01c5157255088 for pr-128013 [INFO] extracting crate exon-bam 0.21.0 into /workspace/builds/worker-1-tc1/source [INFO] validating manifest of crates.io crate exon-bam 0.21.0 on toolchain 2e6fc425411280c658d852813de01c5157255088 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate exon-bam 0.21.0 [INFO] finished tweaking crates.io crate exon-bam 0.21.0 [INFO] tweaked toml for crates.io crate exon-bam 0.21.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Locking 260 packages to latest compatible versions [INFO] [stderr] Adding addr2line v0.22.0 (latest: v0.24.1) [INFO] [stderr] Adding arrow v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-arith v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-array v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-buffer v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-cast v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-csv v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-data v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-ipc v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-json v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-ord v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-row v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-schema v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-select v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding arrow-string v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding bit-vec v0.6.3 (latest: v0.8.0) [INFO] [stderr] Adding bitflags v1.3.2 (latest: v2.6.0) [INFO] [stderr] Adding brotli v3.5.0 (latest: v6.0.0) [INFO] [stderr] Adding brotli-decompressor v2.5.1 (latest: v4.0.1) [INFO] [stderr] Adding chrono-tz v0.8.6 (latest: v0.9.0) [INFO] [stderr] Adding chrono-tz-build v0.2.1 (latest: v0.3.0) [INFO] [stderr] Adding dashmap v5.5.3 (latest: v6.0.1) [INFO] [stderr] Adding datafusion v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-common v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-common-runtime v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-execution v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-expr v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-functions v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-functions-aggregate v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-functions-array v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-optimizer v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-physical-expr v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-physical-expr-common v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-physical-plan v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding datafusion-sql v38.0.0 (latest: v40.0.0) [INFO] [stderr] Adding exon-common v0.21.1 (latest: v0.29.1) [INFO] [stderr] Adding exon-sam v0.21.1 (latest: v0.29.1) [INFO] [stderr] Adding fixedbitset v0.4.2 (latest: v0.5.7) [INFO] [stderr] Adding flatbuffers v23.5.26 (latest: v24.3.25) [INFO] [stderr] Adding generic-array v0.14.7 (latest: v1.1.0) [INFO] [stderr] Adding gimli v0.29.0 (latest: v0.31.0) [INFO] [stderr] Adding heck v0.4.1 (latest: v0.5.0) [INFO] [stderr] Adding hermit-abi v0.3.9 (latest: v0.4.0) [INFO] [stderr] Adding idna v0.5.0 (latest: v1.0.2) [INFO] [stderr] Adding integer-encoding v3.0.4 (latest: v4.0.0) [INFO] [stderr] Adding itertools v0.12.1 (latest: v0.13.0) [INFO] [stderr] Adding linux-raw-sys v0.4.14 (latest: v0.6.4) [INFO] [stderr] Adding noodles v0.73.0 (latest: v0.78.0) [INFO] [stderr] Adding noodles-bam v0.63.0 (latest: v0.65.0) [INFO] [stderr] Adding noodles-bcf v0.54.0 (latest: v0.58.0) [INFO] [stderr] Adding noodles-bgzf v0.30.0 (latest: v0.32.0) [INFO] [stderr] Adding noodles-cram v0.63.0 (latest: v0.66.0) [INFO] [stderr] Adding noodles-csi v0.35.0 (latest: v0.37.0) [INFO] [stderr] Adding noodles-fasta v0.38.0 (latest: v0.41.0) [INFO] [stderr] Adding noodles-fastq v0.10.0 (latest: v0.13.0) [INFO] [stderr] Adding noodles-sam v0.60.0 (latest: v0.62.0) [INFO] [stderr] Adding noodles-tabix v0.41.0 (latest: v0.43.0) [INFO] [stderr] Adding noodles-vcf v0.57.0 (latest: v0.61.0) [INFO] [stderr] Adding object_store v0.9.1 (latest: v0.10.2) [INFO] [stderr] Adding ordered-float v2.10.1 (latest: v4.2.1) [INFO] [stderr] Adding parquet v51.0.0 (latest: v52.1.0) [INFO] [stderr] Adding siphasher v0.3.11 (latest: v1.0.1) [INFO] [stderr] Adding snafu v0.7.5 (latest: v0.8.4) [INFO] [stderr] Adding snafu-derive v0.7.5 (latest: v0.8.4) [INFO] [stderr] Adding sqlparser v0.45.0 (latest: v0.49.0) [INFO] [stderr] Adding syn v1.0.109 (latest: v2.0.72) [INFO] [stderr] Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.1+wasi-0.2.0) [INFO] [stderr] Adding windows-core v0.52.0 (latest: v0.58.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded noodles-vcf v0.57.0 [INFO] [stderr] Downloaded exon-common v0.21.1 [INFO] [stderr] Downloaded exon-sam v0.21.1 [INFO] [stderr] Downloaded noodles-fasta v0.38.0 [INFO] [stderr] Downloaded noodles-bcf v0.54.0 [INFO] [stderr] Downloaded noodles-bam v0.63.0 [INFO] [stderr] Downloaded noodles-sam v0.60.0 [INFO] [stderr] Downloaded noodles-cram v0.63.0 [INFO] [stderr] Downloaded noodles-bgzf v0.30.0 [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded noodles-tabix v0.41.0 [INFO] [stderr] Downloaded noodles v0.73.0 [INFO] [stderr] Downloaded noodles-fastq v0.10.0 [INFO] [stderr] Downloaded noodles-csi v0.35.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 18035ef5411059c05716a5b69aebf9a9513a26949f9df33647370e820e6fd281 [INFO] running `Command { std: "docker" "start" "-a" "18035ef5411059c05716a5b69aebf9a9513a26949f9df33647370e820e6fd281", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "18035ef5411059c05716a5b69aebf9a9513a26949f9df33647370e820e6fd281", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "18035ef5411059c05716a5b69aebf9a9513a26949f9df33647370e820e6fd281", kill_on_drop: false }` [INFO] [stdout] 18035ef5411059c05716a5b69aebf9a9513a26949f9df33647370e820e6fd281 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4edb959d530fbe38d5ee1f6b87bc4742b8b926d827dc672b196a7f3822d74c9d [INFO] running `Command { std: "docker" "start" "-a" "4edb959d530fbe38d5ee1f6b87bc4742b8b926d827dc672b196a7f3822d74c9d", kill_on_drop: false }` [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking lexical-util v0.8.5 [INFO] [stderr] Checking arrow-schema v51.0.0 [INFO] [stderr] Checking tokio v1.39.2 [INFO] [stderr] Checking sqlparser v0.45.0 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Checking noodles-core v0.15.0 [INFO] [stderr] Checking crossbeam-channel v0.5.13 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking itertools v0.13.0 [INFO] [stderr] Checking lexical-parse-integer v0.8.6 [INFO] [stderr] Checking lexical-write-integer v0.8.5 [INFO] [stderr] Checking lexical-parse-float v0.8.5 [INFO] [stderr] Checking lexical-write-float v0.8.5 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking half v2.4.1 [INFO] [stderr] Checking chrono v0.4.38 [INFO] [stderr] Checking atoi v2.0.0 [INFO] [stderr] Checking ordered-float v2.10.1 [INFO] [stderr] Checking lexical-core v0.8.5 [INFO] [stderr] Checking num-bigint v0.4.6 [INFO] [stderr] Checking num-iter v0.1.45 [INFO] [stderr] Checking thrift v0.17.0 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Checking chrono-tz v0.8.6 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking object_store v0.9.1 [INFO] [stderr] Checking tokio-util v0.7.11 [INFO] [stderr] Checking datafusion-common-runtime v38.0.0 [INFO] [stderr] Checking async-compression v0.4.12 [INFO] [stderr] Checking num v0.4.3 [INFO] [stderr] Checking arrow-buffer v51.0.0 [INFO] [stderr] Checking noodles-bgzf v0.30.0 [INFO] [stderr] Checking arrow-data v51.0.0 [INFO] [stderr] Checking noodles-csi v0.35.0 [INFO] [stderr] Checking noodles-sam v0.60.0 [INFO] [stderr] Checking arrow-array v51.0.0 [INFO] [stderr] Checking noodles-bam v0.63.0 [INFO] [stderr] Checking noodles v0.73.0 [INFO] [stderr] Checking arrow-select v51.0.0 [INFO] [stderr] Checking arrow-arith v51.0.0 [INFO] [stderr] Checking arrow-row v51.0.0 [INFO] [stderr] Checking arrow-cast v51.0.0 [INFO] [stderr] Checking arrow-string v51.0.0 [INFO] [stderr] Checking arrow-ord v51.0.0 [INFO] [stderr] Checking arrow-ipc v51.0.0 [INFO] [stderr] Checking arrow-csv v51.0.0 [INFO] [stderr] Checking arrow-json v51.0.0 [INFO] [stderr] Checking arrow v51.0.0 [INFO] [stderr] Checking parquet v51.0.0 [INFO] [stderr] Checking datafusion-common v38.0.0 [INFO] [stderr] Checking datafusion-expr v38.0.0 [INFO] [stderr] Checking datafusion-execution v38.0.0 [INFO] [stderr] Checking datafusion-physical-expr-common v38.0.0 [INFO] [stderr] Checking datafusion-sql v38.0.0 [INFO] [stderr] Checking datafusion-functions-aggregate v38.0.0 [INFO] [stderr] Checking datafusion-physical-expr v38.0.0 [INFO] [stderr] Checking datafusion-functions v38.0.0 [INFO] [stderr] Checking datafusion-optimizer v38.0.0 [INFO] [stderr] Checking datafusion-physical-plan v38.0.0 [INFO] [stderr] Checking datafusion-functions-array v38.0.0 [INFO] [stderr] Checking datafusion v38.0.0 [INFO] [stderr] Checking exon-common v0.21.1 [INFO] [stderr] Checking exon-sam v0.21.1 [INFO] [stderr] Checking exon-bam v0.21.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 34.77s [INFO] running `Command { std: "docker" "inspect" "4edb959d530fbe38d5ee1f6b87bc4742b8b926d827dc672b196a7f3822d74c9d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4edb959d530fbe38d5ee1f6b87bc4742b8b926d827dc672b196a7f3822d74c9d", kill_on_drop: false }` [INFO] [stdout] 4edb959d530fbe38d5ee1f6b87bc4742b8b926d827dc672b196a7f3822d74c9d