[INFO] cloning repository https://github.com/wheaton5/distinguishing_kmers [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wheaton5/distinguishing_kmers" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 956d14d256c7fea54b7e8b072fc67bc99e98e594 [INFO] checking wheaton5/distinguishing_kmers against master#2e6fc425411280c658d852813de01c5157255088 for pr-128013 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/wheaton5/distinguishing_kmers on toolchain 2e6fc425411280c658d852813de01c5157255088 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/wheaton5/distinguishing_kmers [INFO] finished tweaking git repo https://github.com/wheaton5/distinguishing_kmers [INFO] tweaked toml for git repo https://github.com/wheaton5/distinguishing_kmers written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/wheaton5/distinguishing_kmers already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2021 [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/10XGenomics/rust-debruijn.git` [INFO] [stderr] Updating git repository `https://github.com/wheaton5/dna_io.git` [INFO] [stderr] Updating git repository `https://github.com/10XGenomics/rust-boomphf` [INFO] [stderr] Locking 75 packages to latest compatible versions [INFO] [stderr] Adding aho-corasick v1.1.3 [INFO] [stderr] Downgrading ansi_term v0.11.0 -> v0.9.0 (latest: v0.12.1) [INFO] [stderr] Adding bindgen v0.51.1 (latest: v0.69.4) [INFO] [stderr] Adding bio-types v1.0.2 (latest: v1.0.3) [INFO] [stderr] Adding bitflags v0.9.1 (latest: v2.6.0) [INFO] [stderr] Adding boomphf v0.3.1 (https://github.com/10XGenomics/rust-boomphf?branch=master#56c3f192) [INFO] [stderr] Adding bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Updating cc v1.0.28 -> v1.1.6 [INFO] [stderr] Adding cexpr v0.3.6 (latest: v0.6.0) [INFO] [stderr] Adding clang-sys v0.28.1 (latest: v1.8.1) [INFO] [stderr] Downgrading clap v2.32.0 -> v2.27.1 (latest: v4.5.11) [INFO] [stderr] Adding custom_derive v0.1.7 [INFO] [stderr] Adding derive-new v0.5.9 (latest: v0.6.0) [INFO] [stderr] Adding dna_io v0.1.0 (https://github.com/wheaton5/dna_io.git#a640f47b) [INFO] [stderr] Adding env_logger v0.6.2 (latest: v0.11.5) [INFO] [stderr] Adding fs-utils v1.1.4 [INFO] [stderr] Adding glob v0.3.1 [INFO] [stderr] Adding heck v0.5.0 [INFO] [stderr] Adding humantime v1.3.0 (latest: v2.1.0) [INFO] [stderr] Adding idna v0.1.5 (latest: v1.0.2) [INFO] [stderr] Adding ieee754 v0.2.6 [INFO] [stderr] Adding lazy_static v0.2.11 (latest: v1.5.0) [INFO] [stderr] Updating libc v0.2.46 -> v0.2.155 [INFO] [stderr] Adding libloading v0.5.2 (latest: v0.8.5) [INFO] [stderr] Adding libz-sys v1.1.18 [INFO] [stderr] Adding linear-map v1.2.0 [INFO] [stderr] Adding lzma-sys v0.1.20 [INFO] [stderr] Adding matches v0.1.10 [INFO] [stderr] Adding memchr v2.7.4 [INFO] [stderr] Adding newtype_derive v0.1.6 [INFO] [stderr] Adding nom v4.2.3 (latest: v7.1.3) [INFO] [stderr] Adding peeking_take_while v0.1.2 (latest: v1.0.0) [INFO] [stderr] Adding percent-encoding v1.0.1 (latest: v2.3.1) [INFO] [stderr] Adding pkg-config v0.3.30 [INFO] [stderr] Adding proc-macro2 v1.0.86 [INFO] [stderr] Adding quick-error v1.2.3 (latest: v2.0.1) [INFO] [stderr] Adding quote v1.0.36 [INFO] [stderr] Adding regex v1.10.5 [INFO] [stderr] Adding regex-automata v0.4.7 [INFO] [stderr] Adding regex-syntax v0.8.4 [INFO] [stderr] Adding rust-htslib v0.24.0 (latest: v0.47.0) [INFO] [stderr] Adding rustc-hash v1.1.0 (latest: v2.0.0) [INFO] [stderr] Adding rustc_version v0.1.7 (latest: v0.4.0) [INFO] [stderr] Adding rustversion v1.0.17 [INFO] [stderr] Adding semver v0.1.20 (latest: v1.0.23) [INFO] [stderr] Adding shlex v0.1.1 (latest: v1.3.0) [INFO] [stderr] Downgrading strsim v0.7.0 -> v0.6.0 (latest: v0.11.1) [INFO] [stderr] Adding strum_macros v0.26.4 [INFO] [stderr] Adding syn v1.0.109 (latest: v2.0.72) [INFO] [stderr] Adding syn v2.0.72 [INFO] [stderr] Adding termcolor v1.4.1 [INFO] [stderr] Downgrading textwrap v0.10.0 -> v0.9.0 (latest: v0.16.1) [INFO] [stderr] Adding thiserror v1.0.63 [INFO] [stderr] Adding thiserror-impl v1.0.63 [INFO] [stderr] Adding tinyvec v1.8.0 [INFO] [stderr] Adding tinyvec_macros v0.1.1 [INFO] [stderr] Adding unicode-bidi v0.3.15 [INFO] [stderr] Adding unicode-ident v1.0.12 [INFO] [stderr] Adding unicode-normalization v0.1.23 [INFO] [stderr] Adding url v1.7.2 (latest: v2.5.2) [INFO] [stderr] Adding vcpkg v0.2.15 [INFO] [stderr] Adding version_check v0.1.5 (latest: v0.9.5) [INFO] [stderr] Adding which v3.1.1 (latest: v6.0.1) [INFO] [stderr] Adding winapi-util v0.1.8 [INFO] [stderr] Adding windows-sys v0.52.0 [INFO] [stderr] Adding windows-targets v0.52.6 [INFO] [stderr] Adding windows_aarch64_gnullvm v0.52.6 [INFO] [stderr] Adding windows_aarch64_msvc v0.52.6 [INFO] [stderr] Adding windows_i686_gnu v0.52.6 [INFO] [stderr] Adding windows_i686_gnullvm v0.52.6 [INFO] [stderr] Adding windows_i686_msvc v0.52.6 [INFO] [stderr] Adding windows_x86_64_gnu v0.52.6 [INFO] [stderr] Adding windows_x86_64_gnullvm v0.52.6 [INFO] [stderr] Adding windows_x86_64_msvc v0.52.6 [INFO] [stderr] Adding yaml-rust v0.3.5 (latest: v0.4.5) [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bio-types v1.0.2 [INFO] [stderr] Downloaded concurrent-hashmap v0.2.2 [INFO] [stderr] Downloaded bloom v0.3.2 [INFO] [stderr] Downloaded serde_json v1.0.35 [INFO] [stderr] Downloaded rust-htslib v0.24.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b82e14d98bc0432338c20689273d4db6c8cc99ec361bf1b6a3909e7ebfc24482 [INFO] running `Command { std: "docker" "start" "-a" "b82e14d98bc0432338c20689273d4db6c8cc99ec361bf1b6a3909e7ebfc24482", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b82e14d98bc0432338c20689273d4db6c8cc99ec361bf1b6a3909e7ebfc24482", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b82e14d98bc0432338c20689273d4db6c8cc99ec361bf1b6a3909e7ebfc24482", kill_on_drop: false }` [INFO] [stdout] b82e14d98bc0432338c20689273d4db6c8cc99ec361bf1b6a3909e7ebfc24482 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6b8adbe803e1fda93c65ce79c66ea26f163fc95b4dcbda59c6bc983ed4e21e19 [INFO] running `Command { std: "docker" "start" "-a" "6b8adbe803e1fda93c65ce79c66ea26f163fc95b4dcbda59c6bc983ed4e21e19", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2021 [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling cc v1.1.6 [INFO] [stderr] Checking cfg-if v0.1.6 [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Checking rand_core v0.3.0 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Checking lazy_static v1.2.0 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Compiling autocfg v0.1.1 [INFO] [stderr] Checking scopeguard v0.3.3 [INFO] [stderr] Compiling arrayvec v0.4.10 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Checking nodrop v0.1.13 [INFO] [stderr] Compiling rand_pcg v0.1.1 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Checking memoffset v0.2.1 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling num-traits v0.2.6 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling proc-macro2 v0.4.24 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling rand v0.6.4 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling clang-sys v0.28.1 [INFO] [stderr] Checking void v1.0.2 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Checking unreachable v1.0.0 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Checking rand_os v0.1.1 [INFO] [stderr] Compiling parking_lot_core v0.4.0 [INFO] [stderr] Checking rand_xorshift v0.1.1 [INFO] [stderr] Checking rand_isaac v0.1.1 [INFO] [stderr] Checking rand_hc v0.1.0 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling num-integer v0.1.39 [INFO] [stderr] Checking stable_deref_trait v1.1.1 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Checking owning_ref v0.4.0 [INFO] [stderr] Compiling quote v0.6.10 [INFO] [stderr] Compiling textwrap v0.9.0 [INFO] [stderr] Compiling log v0.4.6 [INFO] [stderr] Checking smallvec v0.6.7 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling syn v2.0.72 [INFO] [stderr] Checking crossbeam-utils v0.6.3 [INFO] [stderr] Checking crossbeam-utils v0.2.2 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling ansi_term v0.9.0 [INFO] [stderr] Compiling bitflags v0.9.1 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Checking tinyvec_macros v0.1.1 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling strsim v0.6.0 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Checking either v1.5.0 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Checking tinyvec v1.8.0 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Compiling libz-sys v1.1.18 [INFO] [stderr] Compiling clap v2.27.1 [INFO] [stderr] Compiling cexpr v0.3.6 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking crossbeam-epoch v0.3.1 [INFO] [stderr] Compiling syn v0.15.26 [INFO] [stderr] Checking lock_api v0.1.5 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking num_cpus v1.9.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling thiserror v1.0.63 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling num-bigint v0.2.2 [INFO] [stderr] Compiling bitflags v1.0.4 [INFO] [stderr] Compiling serde v1.0.84 [INFO] [stderr] Checking parking_lot v0.7.1 [INFO] [stderr] Checking crossbeam-deque v0.2.0 [INFO] [stderr] Compiling regex v1.10.5 [INFO] [stderr] Compiling thiserror-impl v1.0.63 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking unicode-normalization v0.1.23 [INFO] [stderr] Compiling serde_derive v1.0.84 [INFO] [stderr] Checking crossbeam-epoch v0.7.0 [INFO] [stderr] Compiling miniz-sys v0.1.11 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Compiling num-iter v0.1.37 [INFO] [stderr] Checking unicode-bidi v0.3.15 [INFO] [stderr] Compiling crc32fast v1.1.2 [INFO] [stderr] Compiling num-rational v0.2.1 [INFO] [stderr] Checking matches v0.1.10 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling num-complex v0.2.1 [INFO] [stderr] Compiling ryu v0.2.7 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Checking idna v0.1.5 [INFO] [stderr] Checking crossbeam-deque v0.6.3 [INFO] [stderr] Checking crossbeam-channel v0.3.6 [INFO] [stderr] Checking itertools v0.8.0 [INFO] [stderr] Checking bit-vec v0.4.4 [INFO] [stderr] Checking percent-encoding v1.0.1 [INFO] [stderr] Checking url v1.7.2 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Checking crossbeam v0.6.0 [INFO] [stderr] Checking rand_core v0.2.2 [INFO] [stderr] Checking lazy_static v0.2.11 [INFO] [stderr] Checking spin v0.4.10 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking itoa v0.4.3 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking fnv v1.0.6 [INFO] [stderr] Checking num v0.2.0 [INFO] [stderr] Checking concurrent-hashmap v0.2.2 [INFO] [stderr] Checking rand v0.5.5 [INFO] [stderr] Checking flate2 v1.0.6 [INFO] [stderr] Checking bit-set v0.4.0 [INFO] [stderr] Checking bio-types v1.0.2 [INFO] [stderr] Checking pdqsort v1.0.3 [INFO] [stderr] Checking byteorder v1.2.7 [INFO] [stderr] Checking bloom v0.3.2 [INFO] [stderr] Compiling rust-htslib v0.24.0 [INFO] [stderr] Checking boomphf v0.3.1 (https://github.com/10XGenomics/rust-boomphf?branch=master#56c3f192) [INFO] [stderr] Checking serde_json v1.0.35 [INFO] [stderr] Checking debruijn v0.2.0 (https://github.com/10XGenomics/rust-debruijn.git#14c1e770) [INFO] [stderr] Checking dna_io v0.1.0 (https://github.com/wheaton5/dna_io.git#a640f47b) [INFO] [stderr] Checking distinguishing_kmers v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:71:13 [INFO] [stdout] | [INFO] [stdout] 71 | let mut reader = dna_io::DnaReader::from_path(kmer_file); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:77:25 [INFO] [stdout] | [INFO] [stdout] 77 | let mut count = kmer_counts.entry(to_hash).or_insert(0); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:71:13 [INFO] [stdout] | [INFO] [stdout] 71 | let mut reader = dna_io::DnaReader::from_path(kmer_file); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:77:25 [INFO] [stdout] | [INFO] [stdout] 77 | let mut count = kmer_counts.entry(to_hash).or_insert(0); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 16.63s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: cexpr v0.3.6, nom v4.2.3 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "6b8adbe803e1fda93c65ce79c66ea26f163fc95b4dcbda59c6bc983ed4e21e19", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6b8adbe803e1fda93c65ce79c66ea26f163fc95b4dcbda59c6bc983ed4e21e19", kill_on_drop: false }` [INFO] [stdout] 6b8adbe803e1fda93c65ce79c66ea26f163fc95b4dcbda59c6bc983ed4e21e19